Wall clock time and date at job start Mon Mar 30 2020 01:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38358 * 120.34800 * 2 1 4 4 N 1.31923 * 121.08473 * 180.27096 * 3 2 1 5 5 C 1.31688 * 121.87875 * 0.02562 * 4 3 2 6 6 C 1.39531 * 120.56688 * 359.97438 * 5 4 3 7 7 C 1.47822 * 120.56143 * 179.97438 * 6 5 4 8 8 O 1.21577 * 120.00249 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99522 * 0.02867 * 7 6 5 10 10 C 1.40531 * 119.99425 * 179.97438 * 9 7 6 11 11 C 1.40669 * 126.08740 * 359.69373 * 10 9 7 12 12 N 1.30901 * 108.38273 * 179.81724 * 11 10 9 13 13 N 1.40062 * 108.41698 * 0.43559 * 12 11 10 14 14 C 1.37316 * 126.07174 * 179.69741 * 13 12 11 15 15 H 1.07993 * 120.00581 * 180.02562 * 14 13 12 16 16 C 1.38989 * 119.99613 * 0.02993 * 14 13 12 17 17 N 1.31296 * 120.00467 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00113 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46872 * 59.99625 * 18 16 14 20 20 H 1.48499 * 109.47185 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46969 * 299.99806 * 18 16 14 22 22 C 1.35702 * 126.08165 * 179.97438 * 10 9 7 23 23 C 1.38355 * 120.35066 * 180.27566 * 2 1 3 24 24 H 1.08998 * 109.47142 * 269.72301 * 1 2 3 25 25 H 1.08996 * 109.46912 * 29.72324 * 1 2 3 26 26 H 1.09000 * 109.46651 * 149.72139 * 1 2 3 27 27 H 1.08008 * 119.45353 * 0.25415 * 3 2 1 28 28 H 1.08000 * 119.71869 * 179.97438 * 5 4 3 29 29 H 0.96996 * 120.00467 * 359.97438 * 9 7 6 30 30 H 1.08003 * 125.80170 * 359.96888 * 11 10 9 31 31 H 0.96999 * 120.00213 * 180.02562 * 17 16 14 32 32 H 1.07998 * 126.24811 * 0.02562 * 22 10 9 33 33 H 1.07996 * 120.85116 * 359.74778 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1940 0.0000 4 7 3.5252 1.2110 -0.0053 5 6 4.2350 0.1017 -0.0114 6 6 3.6055 -1.1435 -0.0118 7 6 4.4023 -2.3885 -0.0192 8 8 3.8433 -3.4681 -0.0199 9 7 5.7487 -2.3268 -0.0250 10 6 6.5062 -3.5104 -0.0314 11 6 5.9955 -4.8211 -0.0265 12 7 7.0029 -5.6568 -0.0392 13 7 8.1919 -4.9165 -0.0426 14 6 9.4649 -5.4314 -0.0492 15 1 10.3162 -4.7669 -0.0509 16 6 9.6577 -6.8078 -0.0538 17 7 8.6227 -7.6158 -0.0513 18 14 11.3893 -7.5084 -0.0634 19 1 12.1162 -7.0483 1.1471 20 1 11.3231 -8.9919 -0.0665 21 1 12.1053 -7.0419 -1.2780 22 6 7.8608 -3.5923 -0.0381 23 6 2.2061 -1.1939 -0.0057 24 1 -0.3633 -0.0050 1.0276 25 1 -0.3633 0.8924 -0.5095 26 1 -0.3632 -0.8875 -0.5182 27 1 1.6628 2.1275 0.0042 28 1 5.3136 0.1563 -0.0161 29 1 6.1948 -1.4655 -0.0247 30 1 4.9499 -5.0917 -0.0166 31 1 8.7573 -8.5764 -0.0541 32 1 8.5508 -2.7615 -0.0390 33 1 1.6859 -2.1403 -0.0062 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742600493.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:51 Heat of formation + Delta-G solvation = 59.489305 kcal Electronic energy + Delta-G solvation = -19301.559705 eV Core-core repulsion = 16135.322288 eV Total energy + Delta-G solvation = -3166.237416 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.95724 -41.26973 -39.81997 -36.06961 -35.14527 -34.52000 -33.20942 -32.19504 -29.69792 -28.18591 -27.01661 -25.37337 -23.76131 -22.90902 -21.84112 -21.20353 -19.40194 -18.69805 -17.68334 -17.57996 -17.37555 -16.51511 -16.30844 -15.92459 -15.39714 -15.32885 -14.86898 -14.83703 -14.37278 -14.11760 -13.59256 -13.50951 -13.41385 -13.33554 -12.89611 -12.88029 -12.75633 -12.13725 -11.91163 -11.16353 -11.03346 -10.86072 -10.84236 -10.44394 -10.12464 -9.97224 -8.56935 -8.47624 -6.25442 -0.40463 0.15264 1.26163 1.40078 1.56714 1.60921 1.88231 1.98056 2.22885 2.44789 2.85007 2.86794 3.08786 3.32427 3.69215 3.80915 3.87536 3.93608 4.20143 4.40760 4.47732 4.61225 4.77463 4.85398 4.96233 4.99057 5.09123 5.17984 5.26046 5.27221 5.38773 5.60338 5.94127 6.27766 6.62467 6.71597 6.81478 7.25512 7.44358 7.65255 8.51568 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.057482 B = 0.003366 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.992253 B = 8316.084676 C = 8787.929101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.138 4.138 3 C 0.119 3.881 4 N -0.498 5.498 5 C 0.125 3.875 6 C -0.183 4.183 7 C 0.545 3.455 8 O -0.573 6.573 9 N -0.606 5.606 10 C -0.049 4.049 11 C -0.058 4.058 12 N -0.310 5.310 13 N -0.166 5.166 14 C -0.354 4.354 15 H 0.143 0.857 16 C -0.007 4.007 17 N -0.824 5.824 18 Si 1.020 2.980 19 H -0.253 1.253 20 H -0.278 1.278 21 H -0.253 1.253 22 C -0.077 4.077 23 C -0.036 4.036 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.195 0.805 28 H 0.178 0.822 29 H 0.419 0.581 30 H 0.168 0.832 31 H 0.277 0.723 32 H 0.191 0.809 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.975 17.356 0.101 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.139 4.139 3 C -0.038 4.038 4 N -0.205 5.205 5 C -0.033 4.033 6 C -0.189 4.189 7 C 0.333 3.667 8 O -0.453 6.453 9 N -0.250 5.250 10 C -0.155 4.155 11 C -0.233 4.233 12 N -0.142 5.142 13 N 0.065 4.935 14 C -0.485 4.485 15 H 0.160 0.840 16 C -0.218 4.218 17 N -0.452 5.452 18 Si 0.839 3.161 19 H -0.177 1.177 20 H -0.203 1.203 21 H -0.177 1.177 22 C -0.228 4.228 23 C -0.062 4.062 24 H 0.105 0.895 25 H 0.114 0.886 26 H 0.090 0.910 27 H 0.212 0.788 28 H 0.195 0.805 29 H 0.257 0.743 30 H 0.185 0.815 31 H 0.087 0.913 32 H 0.208 0.792 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.631 15.963 0.089 18.147 hybrid contribution 0.080 -0.450 0.009 0.457 sum -8.551 15.513 0.098 17.714 Atomic orbital electron populations 1.20825 0.87171 1.04598 1.03918 1.21247 0.99652 0.92601 1.00448 1.23519 0.89503 0.99010 0.91758 1.67779 1.09151 1.30516 1.13094 1.23198 1.01308 0.86089 0.92656 1.20801 0.95428 0.93601 1.09052 1.18480 0.81814 0.89078 0.77330 1.90653 1.71515 1.31206 1.51942 1.42283 1.04926 1.07208 1.70598 1.17317 0.89874 0.86451 1.21872 1.24176 0.99097 0.90873 1.09144 1.78155 0.89321 1.19177 1.27519 1.44856 1.05498 1.02984 1.40147 1.20621 0.80619 0.93267 1.54026 0.83986 1.26906 1.04746 0.96125 0.94068 1.70393 1.33112 1.04582 1.37130 0.84639 0.74220 0.76951 0.80306 1.17684 1.20339 1.17677 1.22014 0.94480 0.88465 1.17830 1.21791 0.92239 1.00035 0.92185 0.89529 0.88588 0.91034 0.78788 0.80525 0.74304 0.81548 0.91350 0.79180 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.03 71.24 0.71 -0.37 16 2 C -0.14 -2.37 5.89 -19.81 -0.12 -2.48 16 3 C 0.12 1.94 10.85 84.71 0.92 2.86 16 4 N -0.50 -10.54 10.35 -194.74 -2.01 -12.56 16 5 C 0.13 2.81 10.71 85.03 0.91 3.72 16 6 C -0.18 -5.03 5.89 -20.00 -0.12 -5.15 16 7 C 0.54 19.84 7.75 86.78 0.67 20.52 16 8 O -0.57 -25.80 13.57 -3.96 -0.05 -25.85 16 9 N -0.61 -21.42 5.42 -306.52 -1.66 -23.08 16 10 C -0.05 -2.28 6.90 37.75 0.26 -2.02 16 11 C -0.06 -3.20 10.85 85.43 0.93 -2.27 16 12 N -0.31 -18.88 10.39 -56.45 -0.59 -19.47 16 13 N -0.17 -9.28 3.74 -190.01 -0.71 -9.99 16 14 C -0.35 -18.75 10.25 84.01 0.86 -17.89 16 15 H 0.14 6.45 7.83 -2.91 -0.02 6.43 16 16 C -0.01 -0.35 5.50 84.95 0.47 0.12 16 17 N -0.82 -47.83 11.81 21.66 0.26 -47.57 16 18 Si 1.02 38.51 29.55 68.60 2.03 40.54 16 19 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 20 H -0.28 -10.45 7.11 99.48 0.71 -9.74 16 21 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 22 C -0.08 -3.58 11.49 83.38 0.96 -2.63 16 23 C -0.04 -0.87 9.39 22.73 0.21 -0.66 16 24 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.10 0.53 8.09 -2.39 -0.02 0.51 16 26 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 27 H 0.20 1.65 8.06 -2.91 -0.02 1.63 16 28 H 0.18 3.06 6.42 -2.91 -0.02 3.04 16 29 H 0.42 10.74 6.89 -92.71 -0.64 10.10 16 30 H 0.17 9.33 5.92 -2.91 -0.02 9.31 16 31 H 0.28 14.79 8.31 -92.71 -0.77 14.02 16 32 H 0.19 6.82 8.06 -2.91 -0.02 6.80 16 33 H 0.14 3.53 7.74 -2.91 -0.02 3.50 16 Total: -1.00 -78.03 295.20 4.45 -73.57 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: 0.53 Total: 30.66 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 6.67 Total: -6.25 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -4.72 Total: -112.66 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.05 Total: -25.85 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -78.03 4.45 -73.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742600493.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.062 kcal (2) G-P(sol) polarization free energy of solvation -78.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds