Wall clock time and date at job start Mon Mar 30 2020 01:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86804 * 119.99712 * 2 1 4 4 H 1.48495 * 109.46763 * 240.00009 * 3 2 1 5 5 H 1.48493 * 109.47194 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46669 * 120.00445 * 3 2 1 7 7 C 1.37873 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99983 * 185.78368 * 7 2 1 9 9 C 1.50705 * 119.99986 * 6.05880 * 7 2 1 10 10 C 1.53000 * 115.54982 * 279.11656 * 9 7 2 11 11 O 1.45200 * 109.46770 * 294.88075 * 10 9 7 12 12 C 1.34230 * 116.99897 * 180.02562 * 11 10 9 13 13 O 1.20830 * 119.99774 * 0.02562 * 12 11 10 14 14 C 1.50702 * 120.00263 * 180.02562 * 12 11 10 15 15 H 1.08993 * 112.82985 * 309.66813 * 14 12 11 16 16 C 1.53522 * 113.58514 * 178.55421 * 14 12 11 17 17 C 1.51616 * 87.24543 * 245.40792 * 16 14 12 18 18 C 1.38365 * 147.52486 * 180.02562 * 17 16 14 19 19 C 1.38097 * 120.32847 * 179.97438 * 18 17 16 20 20 C 1.38256 * 119.95227 * 0.02562 * 19 18 17 21 21 C 1.38098 * 119.95114 * 0.02562 * 20 19 18 22 22 C 1.38248 * 120.41150 * 359.92681 * 21 20 19 23 23 C 1.53001 * 117.49702 * 133.40732 * 9 7 2 24 24 C 1.52999 * 117.49526 * 64.78673 * 9 7 2 25 25 H 0.96998 * 119.99677 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47473 * 54.88303 * 10 9 7 27 27 H 1.09003 * 109.46750 * 174.88577 * 10 9 7 28 28 H 1.08997 * 113.59301 * 0.02562 * 16 14 12 29 29 H 1.08998 * 113.58345 * 130.82206 * 16 14 12 30 30 H 1.07996 * 119.84324 * 359.96553 * 18 17 16 31 31 H 1.07995 * 120.02829 * 179.97438 * 19 18 17 32 32 H 1.07998 * 120.02523 * 179.97438 * 20 19 18 33 33 H 1.08004 * 119.82967 * 180.02562 * 21 20 19 34 34 H 1.08998 * 117.50038 * 359.97438 * 23 9 7 35 35 H 1.09001 * 117.49673 * 145.02117 * 23 9 7 36 36 H 1.09009 * 117.49589 * 214.97476 * 24 9 7 37 37 H 1.08994 * 117.50134 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0805 -1.1964 0.0937 9 6 1.2574 -2.4954 -0.1389 10 6 0.6167 -3.0282 1.1444 11 8 1.6564 -3.3666 2.0999 12 6 1.2588 -3.8522 3.2864 13 8 0.0811 -3.9904 3.5187 14 6 2.2813 -4.2251 4.3288 15 1 3.0669 -4.8719 3.9383 16 6 1.6647 -4.7308 5.6407 17 6 2.2463 -3.4978 6.3041 18 6 2.4094 -2.7646 7.4662 19 6 3.1230 -1.5824 7.4504 20 6 3.6777 -1.1266 6.2689 21 6 3.5170 -1.8540 5.1061 22 6 2.8048 -3.0389 5.1146 23 6 1.8027 -3.5206 -1.1351 24 6 0.5201 -2.7502 -1.4551 25 1 -0.4849 0.8401 0.0004 26 1 -0.0334 -2.2640 1.5702 27 1 0.0302 -3.9179 0.9153 28 1 0.5749 -4.7489 5.6321 29 1 2.1010 -5.6642 5.9963 30 1 1.9765 -3.1184 8.3901 31 1 3.2469 -1.0138 8.3601 32 1 4.2356 -0.2020 6.2551 33 1 3.9516 -1.4964 4.1842 34 1 2.7016 -3.2537 -1.6908 35 1 1.7052 -4.5750 -0.8764 36 1 -0.4212 -3.2978 -1.4068 37 1 0.5751 -1.9764 -2.2207 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744279632.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:39 Heat of formation + Delta-G solvation = -0.344422 kcal Electronic energy + Delta-G solvation = -20334.492838 eV Core-core repulsion = 17236.908429 eV Total energy + Delta-G solvation = -3097.584409 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.84642 -39.17527 -36.84603 -35.47691 -34.93658 -31.98682 -30.77362 -28.02874 -26.91568 -25.54410 -24.76667 -22.21072 -21.24096 -20.92132 -19.45900 -19.24535 -17.33836 -16.81439 -16.47269 -15.69668 -15.42432 -15.08300 -14.60534 -14.40669 -13.98010 -13.48927 -12.98965 -12.88444 -12.81357 -12.19590 -12.12378 -12.00791 -11.77794 -11.57950 -10.99556 -10.97365 -10.86679 -10.57172 -10.48899 -10.31630 -10.08586 -9.84106 -9.58757 -8.85162 -8.79044 -8.55224 -8.49492 -8.21628 -6.07906 -4.12947 1.28423 1.44537 2.66749 3.27079 3.29859 3.34295 3.36371 3.82385 4.15736 4.38059 4.39781 4.43703 5.06995 5.11496 5.13935 5.21478 5.24364 5.47186 5.55914 5.67693 5.73338 5.87110 5.96318 5.99378 6.13279 6.22580 6.32290 6.42118 6.52498 6.54514 6.64108 6.70460 6.74873 6.99672 7.00581 7.24594 7.34146 7.43825 7.85418 8.33362 8.42862 8.87782 9.52705 11.01795 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.016777 B = 0.006065 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.548798 B = 4615.587547 C = 5787.450174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.069 3.931 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.489 4.489 8 H 0.062 0.938 9 C 0.039 3.961 10 C 0.115 3.885 11 O -0.332 6.332 12 C 0.470 3.530 13 O -0.517 6.517 14 C -0.042 4.042 15 H 0.129 0.871 16 C -0.057 4.057 17 C -0.123 4.123 18 C -0.100 4.100 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.076 4.076 22 C -0.118 4.118 23 C -0.204 4.204 24 C -0.150 4.150 25 H 0.262 0.738 26 H 0.079 0.921 27 H 0.038 0.962 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.668 -6.613 11.557 14.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.527 4.527 8 H 0.081 0.919 9 C 0.038 3.962 10 C 0.042 3.958 11 O -0.246 6.246 12 C 0.313 3.687 13 O -0.407 6.407 14 C -0.061 4.061 15 H 0.147 0.853 16 C -0.094 4.094 17 C -0.123 4.123 18 C -0.118 4.118 19 C -0.132 4.132 20 C -0.138 4.138 21 C -0.094 4.094 22 C -0.118 4.118 23 C -0.241 4.241 24 C -0.188 4.188 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.127 0.873 29 H 0.118 0.882 30 H 0.136 0.864 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.141 -6.483 11.570 14.224 hybrid contribution 0.236 1.080 -0.116 1.112 sum 5.376 -5.403 11.453 13.758 Atomic orbital electron populations 1.69976 1.05919 1.26854 1.49115 1.25006 0.94846 0.99051 0.94488 0.86658 0.79671 0.82969 0.78765 1.20114 1.21258 1.20094 1.20333 0.92944 0.88314 1.51079 0.91945 1.18770 0.98434 0.94062 0.84885 1.22910 0.87424 0.97450 0.88006 1.86515 1.42040 1.72485 1.23595 1.22875 0.88556 0.74316 0.82952 1.90604 1.19125 1.51223 1.79766 1.21169 0.96577 0.95640 0.92695 0.85317 1.21858 1.02679 0.95105 0.89737 1.22267 0.98356 0.97553 0.94121 1.20220 0.99952 0.94829 0.96838 1.21008 0.98025 0.95966 0.98214 1.21015 1.00697 0.99822 0.92289 1.20471 0.97310 0.92781 0.98851 1.21626 0.99172 0.95607 0.95383 1.22970 0.97916 0.95699 1.07518 1.22579 0.93219 1.01602 1.01363 0.92817 0.90279 0.94340 0.87270 0.88237 0.86407 0.85687 0.85465 0.85461 0.90051 0.91474 0.91595 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.07 13.10 55.43 0.73 -24.34 16 2 C 0.07 1.90 5.42 -17.82 -0.10 1.80 16 3 Si 0.89 21.12 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.49 -13.34 8.75 -34.44 -0.30 -13.64 16 8 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 9 C 0.04 0.97 1.54 -155.66 -0.24 0.73 16 10 C 0.12 2.79 5.29 37.16 0.20 2.98 16 11 O -0.33 -7.44 10.16 -39.26 -0.40 -7.84 16 12 C 0.47 9.32 7.49 36.01 0.27 9.58 16 13 O -0.52 -11.29 15.45 -18.75 -0.29 -11.58 16 14 C -0.04 -0.63 4.44 -92.22 -0.41 -1.04 16 15 H 0.13 1.58 8.14 -51.93 -0.42 1.15 16 16 C -0.06 -0.72 7.77 -27.17 -0.21 -0.93 16 17 C -0.12 -1.72 7.49 -103.79 -0.78 -2.50 16 18 C -0.10 -1.24 10.03 -39.59 -0.40 -1.64 16 19 C -0.11 -1.35 10.04 -39.63 -0.40 -1.74 16 20 C -0.12 -1.56 10.04 -39.63 -0.40 -1.96 16 21 C -0.08 -1.17 10.02 -39.63 -0.40 -1.57 16 22 C -0.12 -1.85 6.98 -103.83 -0.73 -2.57 16 23 C -0.20 -4.42 9.96 -26.73 -0.27 -4.68 16 24 C -0.15 -3.47 9.66 -26.73 -0.26 -3.73 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.08 2.14 8.13 -51.93 -0.42 1.72 16 27 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 28 H 0.11 1.50 7.05 -51.93 -0.37 1.13 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.13 1.96 8.06 -52.48 -0.42 1.54 16 34 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 37 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 324.97 15.07 4.90 4.90 Total: -1.00 -30.82 324.97 -9.48 -40.30 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -4.98 Total: 3.38 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -4.41 Total: -20.90 kcal Atomic # 7 Polarization: -25.07 SS G_CDS: 0.73 Total: -24.34 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.69 Total: -19.43 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.82 -9.48 -40.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744279632.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.955 kcal (2) G-P(sol) polarization free energy of solvation -30.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds