Wall clock time and date at job start Mon Mar 30 2020 01:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86804 * 119.99712 * 2 1 4 4 H 1.48495 * 109.46763 * 240.00009 * 3 2 1 5 5 H 1.48493 * 109.47194 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46669 * 120.00445 * 3 2 1 7 7 C 1.37873 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99983 * 185.78368 * 7 2 1 9 9 C 1.50705 * 119.99986 * 6.05880 * 7 2 1 10 10 C 1.53000 * 115.54982 * 279.11656 * 9 7 2 11 11 O 1.45200 * 109.46770 * 294.88075 * 10 9 7 12 12 C 1.34230 * 116.99897 * 180.02562 * 11 10 9 13 13 O 1.20830 * 119.99774 * 0.02562 * 12 11 10 14 14 C 1.50702 * 120.00263 * 180.02562 * 12 11 10 15 15 H 1.08993 * 112.82985 * 309.66813 * 14 12 11 16 16 C 1.53522 * 113.58514 * 178.55421 * 14 12 11 17 17 C 1.51616 * 87.24543 * 245.40792 * 16 14 12 18 18 C 1.38365 * 147.52486 * 180.02562 * 17 16 14 19 19 C 1.38097 * 120.32847 * 179.97438 * 18 17 16 20 20 C 1.38256 * 119.95227 * 0.02562 * 19 18 17 21 21 C 1.38098 * 119.95114 * 0.02562 * 20 19 18 22 22 C 1.38248 * 120.41150 * 359.92681 * 21 20 19 23 23 C 1.53001 * 117.49702 * 133.40732 * 9 7 2 24 24 C 1.52999 * 117.49526 * 64.78673 * 9 7 2 25 25 H 0.96998 * 119.99677 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47473 * 54.88303 * 10 9 7 27 27 H 1.09003 * 109.46750 * 174.88577 * 10 9 7 28 28 H 1.08997 * 113.59301 * 0.02562 * 16 14 12 29 29 H 1.08998 * 113.58345 * 130.82206 * 16 14 12 30 30 H 1.07996 * 119.84324 * 359.96553 * 18 17 16 31 31 H 1.07995 * 120.02829 * 179.97438 * 19 18 17 32 32 H 1.07998 * 120.02523 * 179.97438 * 20 19 18 33 33 H 1.08004 * 119.82967 * 180.02562 * 21 20 19 34 34 H 1.08998 * 117.50038 * 359.97438 * 23 9 7 35 35 H 1.09001 * 117.49673 * 145.02117 * 23 9 7 36 36 H 1.09009 * 117.49589 * 214.97476 * 24 9 7 37 37 H 1.08994 * 117.50134 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0805 -1.1964 0.0937 9 6 1.2574 -2.4954 -0.1389 10 6 0.6167 -3.0282 1.1444 11 8 1.6564 -3.3666 2.0999 12 6 1.2588 -3.8522 3.2864 13 8 0.0811 -3.9904 3.5187 14 6 2.2813 -4.2251 4.3288 15 1 3.0669 -4.8719 3.9383 16 6 1.6647 -4.7308 5.6407 17 6 2.2463 -3.4978 6.3041 18 6 2.4094 -2.7646 7.4662 19 6 3.1230 -1.5824 7.4504 20 6 3.6777 -1.1266 6.2689 21 6 3.5170 -1.8540 5.1061 22 6 2.8048 -3.0389 5.1146 23 6 1.8027 -3.5206 -1.1351 24 6 0.5201 -2.7502 -1.4551 25 1 -0.4849 0.8401 0.0004 26 1 -0.0334 -2.2640 1.5702 27 1 0.0302 -3.9179 0.9153 28 1 0.5749 -4.7489 5.6321 29 1 2.1010 -5.6642 5.9963 30 1 1.9765 -3.1184 8.3901 31 1 3.2469 -1.0138 8.3601 32 1 4.2356 -0.2020 6.2551 33 1 3.9516 -1.4964 4.1842 34 1 2.7016 -3.2537 -1.6908 35 1 1.7052 -4.5750 -0.8764 36 1 -0.4212 -3.2978 -1.4068 37 1 0.5751 -1.9764 -2.2207 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744279632.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:39 Heat of formation + Delta-G solvation = -14.995989 kcal Electronic energy + Delta-G solvation = -20335.128177 eV Core-core repulsion = 17236.908429 eV Total energy + Delta-G solvation = -3098.219749 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.12647 -40.61389 -38.62006 -37.08466 -36.19174 -34.06894 -31.79540 -29.44516 -28.36717 -27.43589 -26.17394 -23.40971 -22.99039 -22.12458 -21.22409 -20.71934 -18.85131 -18.43672 -17.88265 -17.35324 -16.97734 -16.53769 -16.24065 -15.70298 -15.52555 -15.03369 -14.41995 -14.14697 -13.95481 -13.78245 -13.61808 -13.49389 -13.09445 -12.98730 -12.87889 -12.81688 -12.44058 -12.11746 -12.02063 -11.84283 -11.69885 -11.54135 -11.30083 -10.81579 -10.53469 -10.12249 -9.83335 -9.58288 -8.16843 -6.27760 0.23321 0.40902 1.12571 1.39351 1.40303 1.47984 1.76514 2.39545 2.77625 3.07090 3.12405 3.32357 3.37091 3.40598 3.82482 4.10691 4.14027 4.18072 4.23693 4.35916 4.44964 4.58829 4.62932 4.69706 4.75435 4.81951 4.89836 4.93722 4.96980 5.10837 5.15054 5.41469 5.43886 5.53685 5.54648 5.64611 5.68566 5.71971 6.02122 6.32179 6.74457 6.77096 7.40799 8.92184 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.016777 B = 0.006065 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.548798 B = 4615.587547 C = 5787.450174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.023 3.977 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.503 4.503 8 H 0.055 0.945 9 C 0.002 3.998 10 C 0.128 3.872 11 O -0.344 6.344 12 C 0.466 3.534 13 O -0.543 6.543 14 C -0.042 4.042 15 H 0.157 0.843 16 C -0.043 4.043 17 C -0.129 4.129 18 C -0.103 4.103 19 C -0.108 4.108 20 C -0.128 4.128 21 C -0.104 4.104 22 C -0.155 4.155 23 C -0.175 4.175 24 C -0.150 4.150 25 H 0.261 0.739 26 H 0.039 0.961 27 H 0.050 0.950 28 H 0.096 0.904 29 H 0.140 0.860 30 H 0.148 0.852 31 H 0.161 0.839 32 H 0.147 0.853 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.824 -7.233 13.226 16.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.177 4.177 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.540 4.540 8 H 0.073 0.927 9 C 0.002 3.998 10 C 0.054 3.946 11 O -0.259 6.259 12 C 0.310 3.690 13 O -0.434 6.434 14 C -0.061 4.061 15 H 0.174 0.826 16 C -0.080 4.080 17 C -0.129 4.129 18 C -0.121 4.121 19 C -0.125 4.125 20 C -0.145 4.145 21 C -0.122 4.122 22 C -0.155 4.155 23 C -0.212 4.212 24 C -0.188 4.188 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.158 0.842 30 H 0.166 0.834 31 H 0.178 0.822 32 H 0.165 0.835 33 H 0.129 0.871 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.314 -7.115 13.239 16.302 hybrid contribution -0.109 1.272 -0.563 1.395 sum 6.205 -5.843 12.676 15.275 Atomic orbital electron populations 1.70092 1.07184 1.27386 1.50212 1.25723 0.95590 1.02164 0.94259 0.85736 0.78564 0.79139 0.79052 1.19123 1.21010 1.19729 1.20590 0.92801 0.89819 1.50828 0.92725 1.18881 1.00301 0.94787 0.85877 1.22517 0.87361 0.96595 0.88080 1.86526 1.41632 1.73074 1.24678 1.23899 0.89441 0.73013 0.82630 1.90578 1.20607 1.52228 1.79973 1.21420 0.96158 0.96443 0.92059 0.82580 1.21882 1.01906 0.96435 0.87737 1.22547 0.98172 0.98063 0.94163 1.20657 0.99381 0.94615 0.97464 1.21462 0.96405 0.95772 0.98904 1.21326 1.00847 1.00303 0.92050 1.20628 0.98513 0.93648 0.99404 1.21838 1.00770 0.96341 0.96593 1.22988 0.97181 0.96265 1.04726 1.22528 0.94649 1.01742 0.99867 0.93009 0.94297 0.93182 0.88532 0.84181 0.83410 0.82175 0.83537 0.87081 0.89467 0.88913 0.90331 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.14 13.10 21.45 0.28 -52.86 16 2 C 0.02 1.27 5.42 84.65 0.46 1.73 16 3 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.50 -27.94 8.75 25.60 0.22 -27.72 16 8 H 0.05 3.03 7.82 -2.91 -0.02 3.01 16 9 C 0.00 0.10 1.54 -52.93 -0.08 0.02 16 10 C 0.13 6.37 5.29 71.98 0.38 6.75 16 11 O -0.34 -15.79 10.16 -51.42 -0.52 -16.31 16 12 C 0.47 18.70 7.49 71.24 0.53 19.23 16 13 O -0.54 -24.20 15.45 21.95 0.34 -23.86 16 14 C -0.04 -1.24 4.44 -11.83 -0.05 -1.29 16 15 H 0.16 3.58 8.14 -2.39 -0.02 3.56 16 16 C -0.04 -1.01 7.77 30.31 0.24 -0.77 16 17 C -0.13 -3.39 7.49 -19.32 -0.14 -3.53 16 18 C -0.10 -2.26 10.03 22.27 0.22 -2.03 16 19 C -0.11 -2.23 10.04 22.24 0.22 -2.00 16 20 C -0.13 -3.15 10.04 22.24 0.22 -2.92 16 21 C -0.10 -3.22 10.02 22.24 0.22 -3.00 16 22 C -0.16 -4.82 6.98 -19.35 -0.14 -4.96 16 23 C -0.17 -7.37 9.96 30.60 0.30 -7.06 16 24 C -0.15 -6.95 9.66 30.59 0.30 -6.66 16 25 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.04 2.21 8.13 -2.39 -0.02 2.19 16 27 H 0.05 2.31 8.08 -2.39 -0.02 2.29 16 28 H 0.10 2.54 7.05 -2.39 -0.02 2.52 16 29 H 0.14 2.08 8.14 -2.39 -0.02 2.07 16 30 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 31 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 33 H 0.11 3.63 8.06 -2.91 -0.02 3.61 16 34 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 35 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 36 H 0.08 3.37 8.14 -2.38 -0.02 3.36 16 37 H 0.07 3.48 8.14 -2.39 -0.02 3.46 16 Total: -1.00 -68.30 324.97 6.10 -62.21 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 1.06 Total: 19.16 kcal Atomic # 6 Polarization: -37.14 SS G_CDS: 2.91 Total: -34.22 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.28 Total: -52.86 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -0.18 Total: -40.17 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -68.30 6.10 -62.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744279632.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.210 kcal (2) G-P(sol) polarization free energy of solvation -68.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds