Wall clock time and date at job start Mon Mar 30 2020 01:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99750 * 2 1 4 4 H 1.48500 * 109.47341 * 269.99886 * 3 2 1 5 5 H 1.48501 * 109.47469 * 30.00285 * 3 2 1 6 6 H 1.48505 * 109.47355 * 150.00202 * 3 2 1 7 7 C 1.37874 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99599 * 186.71201 * 7 2 1 9 9 C 1.50698 * 120.00417 * 6.71219 * 7 2 1 10 10 C 1.53004 * 115.55778 * 278.97387 * 9 7 2 11 11 O 1.45195 * 109.47545 * 320.82114 * 10 9 7 12 12 C 1.34225 * 117.00358 * 179.97438 * 11 10 9 13 13 O 1.20825 * 119.99533 * 0.02562 * 12 11 10 14 14 C 1.50702 * 120.00269 * 179.97438 * 12 11 10 15 15 H 1.09003 * 112.50240 * 50.32317 * 14 12 11 16 16 C 1.52878 * 113.16510 * 180.22990 * 14 12 11 17 17 C 1.51430 * 84.73457 * 115.22500 * 16 14 12 18 18 C 1.38948 * 145.53601 * 180.02562 * 17 16 14 19 19 C 1.37973 * 120.32871 * 180.02562 * 18 17 16 20 20 C 1.38244 * 120.17338 * 0.02562 * 19 18 17 21 21 C 1.38178 * 119.75049 * 359.97438 * 20 19 18 22 22 C 1.38238 * 120.12340 * 0.02562 * 21 20 19 23 23 C 1.53001 * 117.49832 * 64.66082 * 9 7 2 24 24 C 1.53002 * 60.02968 * 107.50659 * 23 9 7 25 25 H 0.96996 * 120.00001 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46889 * 80.82480 * 10 9 7 27 27 H 1.09006 * 109.47021 * 200.81798 * 10 9 7 28 28 H 1.08999 * 113.98702 * 229.16917 * 16 14 12 29 29 H 1.09001 * 113.99526 * 1.28185 * 16 14 12 30 30 H 1.08000 * 119.83342 * 359.97009 * 18 17 16 31 31 H 1.07998 * 119.91175 * 180.02562 * 19 18 17 32 32 H 1.08004 * 120.12246 * 179.97438 * 20 19 18 33 33 H 1.07997 * 119.93702 * 180.02562 * 21 20 19 34 34 H 1.08994 * 117.49869 * 0.02562 * 23 9 7 35 35 H 1.09004 * 117.49781 * 215.00204 * 23 9 7 36 36 H 1.08994 * 117.50440 * 107.48193 * 24 23 9 37 37 H 1.09006 * 117.49659 * 252.47678 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0790 -1.1973 0.1088 9 6 1.2588 -2.4946 -0.1536 10 6 0.6083 -3.0366 1.1208 11 8 1.4924 -2.8091 2.2499 12 6 1.0664 -3.2288 3.4516 13 8 -0.0094 -3.7687 3.5565 14 6 1.9305 -3.0275 4.6698 15 1 2.2850 -2.0011 4.7649 16 6 1.2974 -3.5680 5.9521 17 6 2.4598 -4.5385 5.9513 18 6 3.0675 -5.5986 6.6127 19 6 4.2290 -6.1549 6.1175 20 6 4.7971 -5.6602 4.9583 21 6 4.1971 -4.6061 4.2963 22 6 3.0334 -4.0480 4.7916 23 6 0.5321 -2.7407 -1.4774 24 6 1.8120 -3.5136 -1.1530 25 1 -0.4850 0.8400 0.0004 26 1 -0.3385 -2.5241 1.2916 27 1 0.4279 -4.1059 1.0102 28 1 1.3093 -2.8630 6.7834 29 1 0.3262 -4.0396 5.8023 30 1 2.6291 -5.9885 7.5194 31 1 4.6955 -6.9789 6.6368 32 1 5.7065 -6.0960 4.5716 33 1 4.6381 -4.2176 3.3903 34 1 0.5937 -1.9621 -2.2376 35 1 -0.4096 -3.2884 -1.4403 36 1 1.7124 -4.5696 -0.9022 37 1 2.7154 -3.2436 -1.7000 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744279633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:41 Heat of formation + Delta-G solvation = 2.638374 kcal Electronic energy + Delta-G solvation = -20303.929546 eV Core-core repulsion = 17206.474481 eV Total energy + Delta-G solvation = -3097.455065 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.97093 -39.15263 -36.82130 -35.51679 -34.94531 -31.96089 -30.81648 -28.01157 -26.94074 -25.49590 -24.78994 -22.26758 -21.22139 -20.97148 -19.44332 -19.20700 -17.32893 -16.79287 -16.55269 -15.50988 -15.47759 -15.09916 -14.62741 -14.42377 -14.00850 -13.24288 -13.19089 -13.06536 -12.66651 -12.19525 -12.13215 -12.12048 -11.76036 -11.52099 -11.00387 -10.99440 -10.84916 -10.56707 -10.51275 -10.34882 -10.05960 -9.75745 -9.57173 -8.90494 -8.83231 -8.60107 -8.47074 -8.14817 -6.05468 -4.08940 1.25110 1.36108 2.72424 3.29129 3.35309 3.36377 3.39694 3.77207 4.13118 4.38165 4.40468 4.50430 4.99485 5.08809 5.15640 5.24851 5.30138 5.45585 5.53707 5.62099 5.67216 5.84263 5.98877 5.99305 6.10251 6.19481 6.33221 6.34694 6.46149 6.48181 6.65332 6.70465 6.75935 6.94166 6.98601 7.16878 7.34025 7.46394 7.88136 8.33156 8.51326 8.90782 9.55815 11.04855 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.020633 B = 0.004994 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.703533 B = 5604.836992 C = 5782.408027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.070 3.930 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.481 4.481 8 H 0.063 0.937 9 C 0.038 3.962 10 C 0.118 3.882 11 O -0.317 6.317 12 C 0.469 3.531 13 O -0.522 6.522 14 C -0.040 4.040 15 H 0.129 0.871 16 C -0.061 4.061 17 C -0.120 4.120 18 C -0.103 4.103 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.076 4.076 22 C -0.116 4.116 23 C -0.152 4.152 24 C -0.208 4.208 25 H 0.260 0.740 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.035 -8.481 11.057 15.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.133 4.133 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.519 4.519 8 H 0.081 0.919 9 C 0.038 3.962 10 C 0.044 3.956 11 O -0.231 6.231 12 C 0.312 3.688 13 O -0.413 6.413 14 C -0.059 4.059 15 H 0.146 0.854 16 C -0.098 4.098 17 C -0.120 4.120 18 C -0.121 4.121 19 C -0.134 4.134 20 C -0.139 4.139 21 C -0.094 4.094 22 C -0.117 4.117 23 C -0.190 4.190 24 C -0.246 4.246 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.121 0.879 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.561 -8.510 11.026 14.997 hybrid contribution 0.281 0.881 -0.163 0.939 sum 5.842 -7.629 10.863 14.503 Atomic orbital electron populations 1.69993 1.05921 1.26604 1.49460 1.24968 0.94801 0.98964 0.94563 0.86604 0.79998 0.83364 0.78128 1.20645 1.21296 1.19734 1.20285 0.93018 0.88163 1.50410 0.91930 1.18793 0.98103 0.94360 0.84973 1.22723 0.92392 0.96902 0.83559 1.86585 1.48722 1.72232 1.15535 1.22946 0.85144 0.75115 0.85618 1.90584 1.23003 1.40940 1.86769 1.20977 0.92190 1.01179 0.91595 0.85352 1.21805 0.97359 0.95348 0.95264 1.22373 0.97213 0.96037 0.96362 1.20486 0.95726 0.95839 1.00068 1.20968 0.95780 0.99991 0.96690 1.21022 1.00254 0.96748 0.95860 1.20360 0.93773 0.95449 0.99857 1.21179 0.95359 0.97846 0.97284 1.22586 0.93210 1.01544 1.01655 1.23101 0.98017 0.95602 1.07832 0.92994 0.90895 0.94433 0.87879 0.86933 0.86422 0.85792 0.85424 0.85502 0.89559 0.91621 0.91526 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.90 13.12 55.43 0.73 -24.17 16 2 C 0.07 1.90 5.41 -17.82 -0.10 1.80 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.48 -13.03 8.20 -34.44 -0.28 -13.31 16 8 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 9 C 0.04 0.95 1.72 -155.62 -0.27 0.68 16 10 C 0.12 2.83 5.54 37.16 0.21 3.04 16 11 O -0.32 -7.34 9.59 -39.25 -0.38 -7.72 16 12 C 0.47 9.53 7.46 36.01 0.27 9.80 16 13 O -0.52 -11.49 15.41 -18.75 -0.29 -11.77 16 14 C -0.04 -0.64 4.25 -96.59 -0.41 -1.05 16 15 H 0.13 1.81 8.14 -51.93 -0.42 1.39 16 16 C -0.06 -0.80 7.91 -27.59 -0.22 -1.01 16 17 C -0.12 -1.63 7.32 -107.59 -0.79 -2.42 16 18 C -0.10 -1.21 10.05 -39.42 -0.40 -1.60 16 19 C -0.12 -1.25 10.03 -39.68 -0.40 -1.65 16 20 C -0.12 -1.39 10.06 -39.60 -0.40 -1.79 16 21 C -0.08 -1.06 10.04 -39.60 -0.40 -1.46 16 22 C -0.12 -1.77 7.06 -104.55 -0.74 -2.50 16 23 C -0.15 -3.52 9.70 -26.73 -0.26 -3.78 16 24 C -0.21 -4.52 9.88 -26.69 -0.26 -4.78 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.07 1.90 8.13 -51.93 -0.42 1.48 16 27 H 0.04 0.85 7.93 -51.93 -0.41 0.43 16 28 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.11 1.56 7.02 -51.93 -0.36 1.20 16 30 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 35 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 37 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 323.85 15.07 4.88 4.88 Total: -1.00 -30.61 323.85 -9.49 -40.10 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -4.97 Total: 2.76 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -4.44 Total: -20.03 kcal Atomic # 7 Polarization: -24.90 SS G_CDS: 0.73 Total: -24.17 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.67 Total: -19.50 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.61 -9.49 -40.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744279633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.740 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds