Wall clock time and date at job start Mon Mar 30 2020 01:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99750 * 2 1 4 4 H 1.48500 * 109.47341 * 269.99886 * 3 2 1 5 5 H 1.48501 * 109.47469 * 30.00285 * 3 2 1 6 6 H 1.48505 * 109.47355 * 150.00202 * 3 2 1 7 7 C 1.37874 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99599 * 186.71201 * 7 2 1 9 9 C 1.50698 * 120.00417 * 6.71219 * 7 2 1 10 10 C 1.53004 * 115.55778 * 278.97387 * 9 7 2 11 11 O 1.45195 * 109.47545 * 320.82114 * 10 9 7 12 12 C 1.34225 * 117.00358 * 179.97438 * 11 10 9 13 13 O 1.20825 * 119.99533 * 0.02562 * 12 11 10 14 14 C 1.50702 * 120.00269 * 179.97438 * 12 11 10 15 15 H 1.09003 * 112.50240 * 50.32317 * 14 12 11 16 16 C 1.52878 * 113.16510 * 180.22990 * 14 12 11 17 17 C 1.51430 * 84.73457 * 115.22500 * 16 14 12 18 18 C 1.38948 * 145.53601 * 180.02562 * 17 16 14 19 19 C 1.37973 * 120.32871 * 180.02562 * 18 17 16 20 20 C 1.38244 * 120.17338 * 0.02562 * 19 18 17 21 21 C 1.38178 * 119.75049 * 359.97438 * 20 19 18 22 22 C 1.38238 * 120.12340 * 0.02562 * 21 20 19 23 23 C 1.53001 * 117.49832 * 64.66082 * 9 7 2 24 24 C 1.53002 * 60.02968 * 107.50659 * 23 9 7 25 25 H 0.96996 * 120.00001 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46889 * 80.82480 * 10 9 7 27 27 H 1.09006 * 109.47021 * 200.81798 * 10 9 7 28 28 H 1.08999 * 113.98702 * 229.16917 * 16 14 12 29 29 H 1.09001 * 113.99526 * 1.28185 * 16 14 12 30 30 H 1.08000 * 119.83342 * 359.97009 * 18 17 16 31 31 H 1.07998 * 119.91175 * 180.02562 * 19 18 17 32 32 H 1.08004 * 120.12246 * 179.97438 * 20 19 18 33 33 H 1.07997 * 119.93702 * 180.02562 * 21 20 19 34 34 H 1.08994 * 117.49869 * 0.02562 * 23 9 7 35 35 H 1.09004 * 117.49781 * 215.00204 * 23 9 7 36 36 H 1.08994 * 117.50440 * 107.48193 * 24 23 9 37 37 H 1.09006 * 117.49659 * 252.47678 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0790 -1.1973 0.1088 9 6 1.2588 -2.4946 -0.1536 10 6 0.6083 -3.0366 1.1208 11 8 1.4924 -2.8091 2.2499 12 6 1.0664 -3.2288 3.4516 13 8 -0.0094 -3.7687 3.5565 14 6 1.9305 -3.0275 4.6698 15 1 2.2850 -2.0011 4.7649 16 6 1.2974 -3.5680 5.9521 17 6 2.4598 -4.5385 5.9513 18 6 3.0675 -5.5986 6.6127 19 6 4.2290 -6.1549 6.1175 20 6 4.7971 -5.6602 4.9583 21 6 4.1971 -4.6061 4.2963 22 6 3.0334 -4.0480 4.7916 23 6 0.5321 -2.7407 -1.4774 24 6 1.8120 -3.5136 -1.1530 25 1 -0.4850 0.8400 0.0004 26 1 -0.3385 -2.5241 1.2916 27 1 0.4279 -4.1059 1.0102 28 1 1.3093 -2.8630 6.7834 29 1 0.3262 -4.0396 5.8023 30 1 2.6291 -5.9885 7.5194 31 1 4.6955 -6.9789 6.6368 32 1 5.7065 -6.0960 4.5716 33 1 4.6381 -4.2176 3.3903 34 1 0.5937 -1.9621 -2.2376 35 1 -0.4096 -3.2884 -1.4403 36 1 1.7124 -4.5696 -0.9022 37 1 2.7154 -3.2436 -1.7000 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744279633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:41 Heat of formation + Delta-G solvation = -11.643539 kcal Electronic energy + Delta-G solvation = -20304.548857 eV Core-core repulsion = 17206.474481 eV Total energy + Delta-G solvation = -3098.074375 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.21493 -40.61254 -38.59482 -37.07960 -36.22837 -34.02912 -31.76145 -29.40579 -28.35186 -27.40212 -26.18570 -23.40942 -23.00367 -22.11166 -21.23856 -20.64490 -18.87810 -18.38641 -17.91639 -17.29482 -16.86655 -16.53638 -16.23009 -15.79401 -15.41136 -14.92582 -14.47205 -14.22065 -13.95717 -13.72941 -13.55633 -13.49497 -13.08854 -12.99300 -12.89350 -12.78972 -12.38767 -12.15743 -11.99322 -11.85506 -11.62963 -11.52642 -11.26311 -10.85232 -10.50475 -10.04691 -9.80449 -9.58427 -8.12556 -6.21855 0.27387 0.41032 1.14612 1.41908 1.43125 1.52940 1.83654 2.43497 2.79783 3.05147 3.17235 3.33465 3.37771 3.42115 3.81976 4.13246 4.15477 4.20741 4.24514 4.33919 4.45504 4.58827 4.60910 4.69723 4.78492 4.84987 4.90579 4.93189 4.95763 5.12390 5.13183 5.33207 5.45584 5.54193 5.55217 5.67801 5.71558 5.76130 6.03926 6.34318 6.76465 6.83978 7.45740 8.97305 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.020633 B = 0.004994 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.703533 B = 5604.836992 C = 5782.408027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.025 3.975 3 Si 0.951 3.049 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.492 4.492 8 H 0.054 0.946 9 C 0.002 3.998 10 C 0.128 3.872 11 O -0.335 6.335 12 C 0.464 3.536 13 O -0.545 6.545 14 C -0.045 4.045 15 H 0.138 0.862 16 C -0.050 4.050 17 C -0.127 4.127 18 C -0.107 4.107 19 C -0.109 4.109 20 C -0.120 4.120 21 C -0.097 4.097 22 C -0.152 4.152 23 C -0.152 4.152 24 C -0.181 4.181 25 H 0.260 0.740 26 H 0.041 0.959 27 H 0.048 0.952 28 H 0.135 0.865 29 H 0.100 0.900 30 H 0.145 0.855 31 H 0.160 0.840 32 H 0.155 0.845 33 H 0.120 0.880 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.655 -9.637 12.488 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.776 3.224 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.530 4.530 8 H 0.072 0.928 9 C 0.001 3.999 10 C 0.054 3.946 11 O -0.249 6.249 12 C 0.308 3.692 13 O -0.436 6.436 14 C -0.064 4.064 15 H 0.156 0.844 16 C -0.086 4.086 17 C -0.127 4.127 18 C -0.125 4.125 19 C -0.127 4.127 20 C -0.138 4.138 21 C -0.115 4.115 22 C -0.152 4.152 23 C -0.190 4.190 24 C -0.218 4.218 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.153 0.847 29 H 0.119 0.881 30 H 0.162 0.838 31 H 0.178 0.822 32 H 0.173 0.827 33 H 0.138 0.862 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.195 -9.674 12.459 17.337 hybrid contribution -0.184 1.149 -0.573 1.298 sum 7.011 -8.525 11.885 16.220 Atomic orbital electron populations 1.70106 1.07182 1.27185 1.50530 1.25666 0.95520 1.02003 0.94326 0.85668 0.78871 0.79517 0.78308 1.19968 1.21164 1.19184 1.20495 0.92787 0.89543 1.50170 0.92780 1.18939 0.99888 0.95113 0.85929 1.22442 0.91210 0.96891 0.84019 1.86591 1.48865 1.72988 1.16470 1.23933 0.85440 0.73989 0.85800 1.90553 1.24173 1.41917 1.86994 1.21208 0.92546 1.02385 0.90268 0.84402 1.21815 0.96501 0.95724 0.94608 1.22474 0.97205 0.96812 0.96225 1.20881 0.95886 0.94920 1.00778 1.21439 0.95046 1.00125 0.96045 1.21385 1.00892 0.95654 0.95873 1.20567 0.93990 0.96660 1.00291 1.21259 0.96352 0.98752 0.98878 1.22523 0.94576 1.01677 1.00217 1.23117 0.97344 0.96160 1.05158 0.93128 0.94016 0.93360 0.84660 0.88142 0.83750 0.82201 0.82750 0.86227 0.91061 0.90472 0.89115 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.58 13.12 21.45 0.28 -52.30 16 2 C 0.02 1.36 5.41 84.65 0.46 1.82 16 3 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.49 -27.05 8.20 25.60 0.21 -26.84 16 8 H 0.05 2.98 7.82 -2.91 -0.02 2.96 16 9 C 0.00 0.09 1.72 -52.90 -0.09 0.00 16 10 C 0.13 6.35 5.54 71.98 0.40 6.75 16 11 O -0.33 -16.01 9.59 -51.37 -0.49 -16.51 16 12 C 0.46 19.40 7.46 71.24 0.53 19.93 16 13 O -0.54 -24.68 15.41 21.97 0.34 -24.34 16 14 C -0.05 -1.44 4.25 -14.66 -0.06 -1.50 16 15 H 0.14 3.95 8.14 -2.39 -0.02 3.93 16 16 C -0.05 -1.26 7.91 30.04 0.24 -1.02 16 17 C -0.13 -3.26 7.32 -21.78 -0.16 -3.42 16 18 C -0.11 -2.18 10.05 22.38 0.22 -1.95 16 19 C -0.11 -1.95 10.03 22.21 0.22 -1.72 16 20 C -0.12 -2.47 10.06 22.26 0.22 -2.24 16 21 C -0.10 -2.64 10.04 22.26 0.22 -2.41 16 22 C -0.15 -4.56 7.06 -19.82 -0.14 -4.70 16 23 C -0.15 -7.06 9.70 30.60 0.30 -6.77 16 24 C -0.18 -7.66 9.88 30.62 0.30 -7.36 16 25 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 26 H 0.04 2.28 8.13 -2.38 -0.02 2.26 16 27 H 0.05 2.22 7.93 -2.38 -0.02 2.20 16 28 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.10 2.77 7.02 -2.39 -0.02 2.75 16 30 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 31 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 33 H 0.12 3.27 8.06 -2.91 -0.02 3.24 16 34 H 0.07 3.48 8.14 -2.39 -0.02 3.46 16 35 H 0.08 3.34 8.14 -2.38 -0.02 3.32 16 36 H 0.09 3.39 8.08 -2.39 -0.02 3.37 16 37 H 0.09 3.60 8.14 -2.38 -0.02 3.58 16 Total: -1.00 -67.03 323.85 6.09 -60.94 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 1.06 Total: 18.20 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 2.88 Total: -31.45 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.28 Total: -52.30 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -0.15 Total: -40.85 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -67.03 6.09 -60.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744279633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.294 kcal (2) G-P(sol) polarization free energy of solvation -67.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds