Wall clock time and date at job start Mon Mar 30 2020 01:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86793 * 120.00278 * 2 1 4 4 H 1.48494 * 109.47294 * 270.00222 * 3 2 1 5 5 H 1.48506 * 109.47119 * 30.00264 * 3 2 1 6 6 H 1.48497 * 109.47249 * 149.99914 * 3 2 1 7 7 C 1.38765 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00007 * 359.97438 * 7 2 1 9 9 O 1.34923 * 119.99606 * 180.02562 * 7 2 1 10 10 C 1.34311 * 116.99499 * 179.97438 * 9 7 2 11 11 O 1.21216 * 120.00186 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99847 * 179.97438 * 10 9 7 13 13 H 1.08998 * 115.56779 * 282.76284 * 12 10 9 14 14 C 1.53036 * 117.50157 * 137.05295 * 12 10 9 15 15 C 1.52815 * 117.50491 * 68.47949 * 12 10 9 16 16 C 1.53190 * 117.72497 * 215.14560 * 15 12 10 17 17 C 1.53441 * 107.67221 * 190.33097 * 16 15 12 18 18 C 1.52584 * 109.07562 * 294.21649 * 17 16 15 19 19 C 1.50460 * 111.33412 * 54.30064 * 18 17 16 20 20 C 1.38794 * 118.44368 * 158.40378 * 19 18 17 21 21 C 1.37991 * 120.40971 * 179.37851 * 20 19 18 22 22 C 1.38265 * 119.98605 * 0.02562 * 21 20 19 23 23 C 1.38098 * 119.74260 * 0.13202 * 22 21 20 24 24 C 1.37922 * 122.10465 * 338.04728 * 19 18 17 25 25 H 0.96992 * 120.00289 * 359.97438 * 1 2 3 26 26 H 1.09003 * 117.49917 * 145.04961 * 14 12 10 27 27 H 1.08995 * 117.50262 * 359.97438 * 14 12 10 28 28 H 1.08998 * 109.81909 * 309.87362 * 16 15 12 29 29 H 1.08999 * 109.81446 * 70.79058 * 16 15 12 30 30 H 1.08999 * 109.53613 * 54.09370 * 17 16 15 31 31 H 1.08997 * 109.53527 * 174.34025 * 17 16 15 32 32 H 1.09003 * 109.10524 * 293.82329 * 18 17 16 33 33 H 1.08997 * 109.10723 * 174.78549 * 18 17 16 34 34 H 1.07997 * 119.79628 * 359.35534 * 20 19 18 35 35 H 1.08004 * 120.00906 * 179.97438 * 21 20 19 36 36 H 1.08003 * 120.12557 * 180.10917 * 22 21 20 37 37 H 1.08000 * 119.87363 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6176 0.0000 4 1 2.4959 2.0463 -1.4000 5 1 1.4459 2.6526 0.7001 6 1 3.5460 1.4400 0.7000 7 6 2.0082 -1.2018 -0.0005 8 1 1.4682 -2.1370 -0.0005 9 8 3.3574 -1.2017 0.0000 10 6 3.9671 -2.3985 0.0000 11 8 3.3069 -3.4150 -0.0010 12 6 5.4720 -2.4774 -0.0001 13 1 5.9532 -2.2850 -0.9590 14 6 6.1257 -3.5066 0.9248 15 6 6.2028 -2.0178 1.2609 16 6 7.5540 -1.3173 1.0862 17 6 8.1971 -1.1931 2.4738 18 6 7.3540 -0.2544 3.3319 19 6 5.9175 -0.6993 3.3806 20 6 5.1262 -0.2646 4.4347 21 6 3.7999 -0.6375 4.5126 22 6 3.2520 -1.4496 3.5369 23 6 4.0376 -1.8865 2.4885 24 6 5.3691 -1.5135 2.4118 25 1 -0.4850 0.8399 0.0004 26 1 7.0370 -3.9913 0.5741 27 1 5.4673 -4.1263 1.5334 28 1 8.1954 -1.9092 0.4333 29 1 7.4037 -0.3261 0.6584 30 1 8.2417 -2.1754 2.9441 31 1 9.2045 -0.7893 2.3738 32 1 7.4021 0.7511 2.9137 33 1 7.7571 -0.2380 4.3444 34 1 5.5512 0.3692 5.1990 35 1 3.1902 -0.2958 5.3360 36 1 2.2138 -1.7414 3.5947 37 1 3.6117 -2.5205 1.7250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745717190.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:29 Heat of formation + Delta-G solvation = -23.976964 kcal Electronic energy + Delta-G solvation = -21597.630150 eV Core-core repulsion = 18499.020957 eV Total energy + Delta-G solvation = -3098.609193 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.76629 -38.84613 -37.00428 -35.36922 -34.45835 -32.28276 -30.25935 -30.00913 -27.23453 -25.97081 -23.41340 -22.79954 -22.49783 -20.99429 -19.62312 -18.54805 -17.94894 -17.01523 -15.80550 -15.59419 -15.43260 -14.95519 -14.73068 -13.96570 -13.76348 -13.45738 -13.28618 -12.83770 -12.65299 -12.44545 -12.37728 -11.99914 -11.82208 -11.65597 -11.35588 -11.21718 -10.97785 -10.67753 -10.42481 -10.34514 -10.20959 -10.09656 -9.82157 -9.63884 -9.11790 -8.67104 -8.21819 -8.03336 -6.36888 -4.11337 1.74557 1.87224 3.10759 3.25276 3.33454 3.44178 3.74670 4.11649 4.28034 4.36457 4.70888 4.74881 4.84458 5.01105 5.12763 5.18274 5.26783 5.35942 5.41328 5.58593 5.59860 5.75602 5.82529 5.83725 5.85519 5.96299 6.00917 6.12266 6.19175 6.28903 6.32582 6.43021 6.50176 6.53704 6.92024 7.05229 7.14717 7.48503 7.71738 8.03584 8.58942 9.02521 9.70758 10.71224 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.017264 B = 0.008668 C = 0.007451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.494933 B = 3229.473333 C = 3756.966626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.072 3.928 3 Si 0.895 3.105 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.378 4.378 8 H 0.109 0.891 9 O -0.242 6.242 10 C 0.444 3.556 11 O -0.544 6.544 12 C -0.139 4.139 13 H 0.133 0.867 14 C -0.135 4.135 15 C -0.069 4.069 16 C -0.081 4.081 17 C -0.113 4.113 18 C -0.077 4.077 19 C -0.080 4.080 20 C -0.132 4.132 21 C -0.123 4.123 22 C -0.106 4.106 23 C -0.111 4.111 24 C -0.046 4.046 25 H 0.279 0.721 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.861 0.004 6.591 17.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.132 4.132 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.179 1.179 7 C -0.453 4.453 8 H 0.127 0.873 9 O -0.150 6.150 10 C 0.292 3.708 11 O -0.442 6.442 12 C -0.158 4.158 13 H 0.151 0.849 14 C -0.172 4.172 15 C -0.069 4.069 16 C -0.119 4.119 17 C -0.151 4.151 18 C -0.114 4.114 19 C -0.080 4.080 20 C -0.150 4.150 21 C -0.141 4.141 22 C -0.124 4.124 23 C -0.128 4.128 24 C -0.046 4.046 25 H 0.089 0.911 26 H 0.125 0.875 27 H 0.121 0.879 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.141 0.859 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 15.495 -0.094 6.601 16.842 hybrid contribution -0.105 0.885 -0.150 0.904 sum 15.389 0.791 6.451 16.705 Atomic orbital electron populations 1.69600 1.05666 1.28341 1.47547 1.24468 0.94867 0.98462 0.95383 0.86341 0.80870 0.81855 0.78923 1.19956 1.20824 1.17912 1.20599 0.76212 0.96805 1.51719 0.87320 1.83632 1.23744 1.31126 1.76469 1.21521 0.89006 0.82783 0.77451 1.90652 1.66356 1.36355 1.50788 1.21873 0.90508 1.06554 0.96883 0.84928 1.23209 1.01984 0.90993 1.00992 1.20258 0.96225 0.96702 0.93713 1.21261 0.92686 1.00681 0.97236 1.21457 0.98107 1.00102 0.95416 1.20327 0.91454 0.99314 1.00258 1.19439 0.95564 0.98093 0.94882 1.20932 0.94285 1.01373 0.98410 1.21040 0.95167 0.98748 0.99183 1.21105 0.99825 0.97473 0.93979 1.21927 0.92969 0.99774 0.98129 1.18636 0.93263 0.98374 0.94350 0.91095 0.87490 0.87858 0.91072 0.90832 0.91505 0.91522 0.90976 0.91210 0.86745 0.86569 0.85941 0.83592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.80 13.96 55.48 0.77 -25.02 16 2 C 0.07 2.08 5.49 -17.52 -0.10 1.98 16 3 Si 0.89 22.03 28.62 -169.99 -4.86 17.16 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.38 -11.10 9.82 30.93 0.30 -10.80 16 8 H 0.11 3.51 7.09 -52.49 -0.37 3.14 16 9 O -0.24 -6.40 7.30 -20.71 -0.15 -6.55 16 10 C 0.44 10.57 4.16 36.00 0.15 10.72 16 11 O -0.54 -14.43 15.32 -19.06 -0.29 -14.72 16 12 C -0.14 -2.49 5.99 -91.85 -0.55 -3.04 16 13 H 0.13 2.01 8.14 -51.93 -0.42 1.59 16 14 C -0.13 -2.01 9.28 -26.80 -0.25 -2.26 16 15 C -0.07 -1.10 2.24 -155.70 -0.35 -1.44 16 16 C -0.08 -1.00 5.73 -26.40 -0.15 -1.15 16 17 C -0.11 -1.22 5.92 -26.72 -0.16 -1.37 16 18 C -0.08 -0.93 5.66 -28.21 -0.16 -1.09 16 19 C -0.08 -1.29 5.75 -104.65 -0.60 -1.89 16 20 C -0.13 -2.07 9.63 -39.47 -0.38 -2.45 16 21 C -0.12 -2.09 10.04 -39.66 -0.40 -2.49 16 22 C -0.11 -2.11 10.06 -39.62 -0.40 -2.50 16 23 C -0.11 -2.34 7.13 -39.54 -0.28 -2.63 16 24 C -0.05 -0.85 5.55 -104.60 -0.58 -1.43 16 25 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.10 1.69 8.02 -51.93 -0.42 1.28 16 28 H 0.07 0.71 8.03 -51.93 -0.42 0.29 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.72 8.13 -51.93 -0.42 0.29 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 36 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 37 H 0.15 3.48 3.20 -57.11 -0.18 3.30 16 LS Contribution 304.71 15.07 4.59 4.59 Total: -1.00 -32.67 304.71 -8.59 -41.26 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -4.75 Total: 5.13 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -3.90 Total: -21.84 kcal Atomic # 7 Polarization: -25.80 SS G_CDS: 0.77 Total: -25.02 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.44 Total: -21.27 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.86 Total: 17.16 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.67 -8.59 -41.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745717190.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.283 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds