Wall clock time and date at job start Mon Mar 30 2020 01:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86793 * 120.00278 * 2 1 4 4 H 1.48494 * 109.47294 * 270.00222 * 3 2 1 5 5 H 1.48506 * 109.47119 * 30.00264 * 3 2 1 6 6 H 1.48497 * 109.47249 * 149.99914 * 3 2 1 7 7 C 1.38765 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00007 * 359.97438 * 7 2 1 9 9 O 1.34923 * 119.99606 * 180.02562 * 7 2 1 10 10 C 1.34311 * 116.99499 * 179.97438 * 9 7 2 11 11 O 1.21216 * 120.00186 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99847 * 179.97438 * 10 9 7 13 13 H 1.08998 * 115.56779 * 282.76284 * 12 10 9 14 14 C 1.53036 * 117.50157 * 137.05295 * 12 10 9 15 15 C 1.52815 * 117.50491 * 68.47949 * 12 10 9 16 16 C 1.53190 * 117.72497 * 215.14560 * 15 12 10 17 17 C 1.53441 * 107.67221 * 190.33097 * 16 15 12 18 18 C 1.52584 * 109.07562 * 294.21649 * 17 16 15 19 19 C 1.50460 * 111.33412 * 54.30064 * 18 17 16 20 20 C 1.38794 * 118.44368 * 158.40378 * 19 18 17 21 21 C 1.37991 * 120.40971 * 179.37851 * 20 19 18 22 22 C 1.38265 * 119.98605 * 0.02562 * 21 20 19 23 23 C 1.38098 * 119.74260 * 0.13202 * 22 21 20 24 24 C 1.37922 * 122.10465 * 338.04728 * 19 18 17 25 25 H 0.96992 * 120.00289 * 359.97438 * 1 2 3 26 26 H 1.09003 * 117.49917 * 145.04961 * 14 12 10 27 27 H 1.08995 * 117.50262 * 359.97438 * 14 12 10 28 28 H 1.08998 * 109.81909 * 309.87362 * 16 15 12 29 29 H 1.08999 * 109.81446 * 70.79058 * 16 15 12 30 30 H 1.08999 * 109.53613 * 54.09370 * 17 16 15 31 31 H 1.08997 * 109.53527 * 174.34025 * 17 16 15 32 32 H 1.09003 * 109.10524 * 293.82329 * 18 17 16 33 33 H 1.08997 * 109.10723 * 174.78549 * 18 17 16 34 34 H 1.07997 * 119.79628 * 359.35534 * 20 19 18 35 35 H 1.08004 * 120.00906 * 179.97438 * 21 20 19 36 36 H 1.08003 * 120.12557 * 180.10917 * 22 21 20 37 37 H 1.08000 * 119.87363 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6176 0.0000 4 1 2.4959 2.0463 -1.4000 5 1 1.4459 2.6526 0.7001 6 1 3.5460 1.4400 0.7000 7 6 2.0082 -1.2018 -0.0005 8 1 1.4682 -2.1370 -0.0005 9 8 3.3574 -1.2017 0.0000 10 6 3.9671 -2.3985 0.0000 11 8 3.3069 -3.4150 -0.0010 12 6 5.4720 -2.4774 -0.0001 13 1 5.9532 -2.2850 -0.9590 14 6 6.1257 -3.5066 0.9248 15 6 6.2028 -2.0178 1.2609 16 6 7.5540 -1.3173 1.0862 17 6 8.1971 -1.1931 2.4738 18 6 7.3540 -0.2544 3.3319 19 6 5.9175 -0.6993 3.3806 20 6 5.1262 -0.2646 4.4347 21 6 3.7999 -0.6375 4.5126 22 6 3.2520 -1.4496 3.5369 23 6 4.0376 -1.8865 2.4885 24 6 5.3691 -1.5135 2.4118 25 1 -0.4850 0.8399 0.0004 26 1 7.0370 -3.9913 0.5741 27 1 5.4673 -4.1263 1.5334 28 1 8.1954 -1.9092 0.4333 29 1 7.4037 -0.3261 0.6584 30 1 8.2417 -2.1754 2.9441 31 1 9.2045 -0.7893 2.3738 32 1 7.4021 0.7511 2.9137 33 1 7.7571 -0.2380 4.3444 34 1 5.5512 0.3692 5.1990 35 1 3.1902 -0.2958 5.3360 36 1 2.2138 -1.7414 3.5947 37 1 3.6117 -2.5205 1.7250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745717190.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:28 Heat of formation + Delta-G solvation = -42.441126 kcal Electronic energy + Delta-G solvation = -21598.430816 eV Core-core repulsion = 18499.020957 eV Total energy + Delta-G solvation = -3099.409859 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.30304 -40.51245 -38.39260 -37.26763 -35.66664 -34.50629 -31.57757 -31.22416 -28.61868 -27.75631 -25.13317 -24.00622 -23.68763 -22.21755 -21.36055 -20.15313 -19.72681 -18.79366 -17.56678 -17.16862 -16.78756 -16.33254 -16.10285 -15.81185 -15.10934 -14.74965 -14.63548 -14.42799 -14.10843 -14.02318 -13.68930 -13.47631 -13.33630 -13.07396 -12.88207 -12.51686 -12.40278 -12.19982 -12.03812 -11.92913 -11.82741 -11.42850 -11.30107 -11.12895 -10.86483 -10.79111 -9.60905 -9.35456 -8.58172 -6.41386 0.38255 0.47723 1.20174 1.24658 1.43942 1.49462 2.19442 2.27247 2.60798 2.89598 3.02697 3.50470 3.60952 3.71688 3.85851 4.02697 4.12738 4.19850 4.32221 4.38131 4.45424 4.49360 4.60529 4.69339 4.75977 4.88045 4.96516 5.03237 5.08928 5.10663 5.13617 5.24235 5.34554 5.45077 5.52173 5.59944 5.69970 5.75716 5.86348 6.14801 6.48575 6.80446 7.58675 8.54971 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.017264 B = 0.008668 C = 0.007451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.494933 B = 3229.473333 C = 3756.966626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.024 3.976 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.392 4.392 8 H 0.055 0.945 9 O -0.249 6.249 10 C 0.451 3.549 11 O -0.585 6.585 12 C -0.166 4.166 13 H 0.167 0.833 14 C -0.117 4.117 15 C -0.060 4.060 16 C -0.078 4.078 17 C -0.109 4.109 18 C -0.078 4.078 19 C -0.077 4.077 20 C -0.128 4.128 21 C -0.125 4.125 22 C -0.141 4.141 23 C -0.145 4.145 24 C -0.066 4.066 25 H 0.288 0.712 26 H 0.157 0.843 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.157 0.843 35 H 0.142 0.858 36 H 0.097 0.903 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.939 2.336 7.505 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.789 3.211 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.468 4.468 8 H 0.073 0.927 9 O -0.158 6.158 10 C 0.301 3.699 11 O -0.483 6.483 12 C -0.184 4.184 13 H 0.185 0.815 14 C -0.153 4.153 15 C -0.060 4.060 16 C -0.116 4.116 17 C -0.147 4.147 18 C -0.115 4.115 19 C -0.077 4.077 20 C -0.145 4.145 21 C -0.142 4.142 22 C -0.159 4.159 23 C -0.163 4.163 24 C -0.066 4.066 25 H 0.097 0.903 26 H 0.174 0.826 27 H 0.094 0.906 28 H 0.122 0.878 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.175 0.825 35 H 0.159 0.841 36 H 0.116 0.884 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 20.569 2.215 7.510 22.009 hybrid contribution -1.708 -0.012 -0.348 1.743 sum 18.861 2.204 7.162 20.295 Atomic orbital electron populations 1.69693 1.07316 1.29910 1.48578 1.25357 0.95767 1.02055 0.94399 0.85268 0.79155 0.76882 0.79795 1.18196 1.19034 1.18129 1.20166 0.77747 0.95323 1.53584 0.92739 1.83639 1.21826 1.32591 1.77773 1.22886 0.91639 0.81385 0.74015 1.90614 1.68205 1.37550 1.51980 1.22094 0.85888 1.10590 0.99874 0.81528 1.23372 1.02505 0.90643 0.98798 1.20564 0.97233 0.97388 0.90834 1.21400 0.90416 1.00563 0.99172 1.21495 0.99262 1.00113 0.93789 1.20495 0.88535 0.99955 1.02514 1.20046 0.98074 0.96058 0.93530 1.21465 0.93365 1.00667 0.99031 1.21325 0.96549 0.97635 0.98723 1.21107 0.99089 0.99933 0.95809 1.21754 0.95169 1.01160 0.98173 1.18986 0.92269 0.99088 0.96244 0.90254 0.82568 0.90568 0.87825 0.90998 0.91343 0.88014 0.89908 0.88478 0.82549 0.84069 0.88441 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.82 13.96 21.63 0.30 -56.52 16 2 C 0.02 1.46 5.49 84.88 0.47 1.93 16 3 Si 0.97 46.19 28.62 68.60 1.96 48.15 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.39 -24.84 9.82 67.95 0.67 -24.17 16 8 H 0.05 3.94 7.09 -2.91 -0.02 3.92 16 9 O -0.25 -13.93 7.30 14.83 0.11 -13.83 16 10 C 0.45 22.66 4.16 71.24 0.30 22.96 16 11 O -0.58 -33.79 15.32 20.76 0.32 -33.47 16 12 C -0.17 -5.81 5.99 -11.59 -0.07 -5.87 16 13 H 0.17 4.62 8.14 -2.39 -0.02 4.60 16 14 C -0.12 -3.28 9.28 30.55 0.28 -3.00 16 15 C -0.06 -1.77 2.24 -52.95 -0.12 -1.89 16 16 C -0.08 -1.50 5.73 30.81 0.18 -1.32 16 17 C -0.11 -1.67 5.92 30.60 0.18 -1.49 16 18 C -0.08 -1.46 5.66 29.63 0.17 -1.29 16 19 C -0.08 -2.25 5.75 -19.88 -0.11 -2.36 16 20 C -0.13 -3.60 9.63 22.34 0.22 -3.39 16 21 C -0.12 -4.16 10.04 22.22 0.22 -3.94 16 22 C -0.14 -6.03 10.06 22.24 0.22 -5.81 16 23 C -0.14 -6.51 7.13 22.30 0.16 -6.35 16 24 C -0.07 -2.37 5.55 -19.85 -0.11 -2.48 16 25 H 0.29 16.18 8.31 -92.71 -0.77 15.41 16 26 H 0.16 2.82 8.14 -2.39 -0.02 2.80 16 27 H 0.08 2.57 8.02 -2.39 -0.02 2.55 16 28 H 0.10 1.36 8.03 -2.39 -0.02 1.34 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 31 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.34 8.10 -2.39 -0.02 1.33 16 34 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 35 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 36 H 0.10 4.41 8.06 -2.91 -0.02 4.38 16 37 H 0.11 5.59 3.20 -7.25 -0.02 5.57 16 Total: -1.00 -80.39 304.71 6.40 -73.98 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 1.06 Total: 20.15 kcal Atomic # 6 Polarization: -41.12 SS G_CDS: 2.65 Total: -38.47 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.30 Total: -56.52 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: 0.43 Total: -47.30 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.96 Total: 48.15 kcal Total: -80.39 6.40 -73.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745717190.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.543 kcal (2) G-P(sol) polarization free energy of solvation -80.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds