Wall clock time and date at job start Mon Mar 30 2020 01:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86806 * 119.99960 * 2 1 4 4 H 1.48496 * 109.46840 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46860 * 120.00604 * 3 2 1 6 6 H 1.48497 * 109.47302 * 240.00637 * 3 2 1 7 7 C 1.38759 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00162 * 179.97438 * 7 2 1 9 9 O 1.34915 * 119.99532 * 359.97438 * 7 2 1 10 10 C 1.34315 * 116.99596 * 180.02562 * 9 7 2 11 11 O 1.21205 * 120.00165 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99718 * 180.02562 * 10 9 7 13 13 H 1.08999 * 115.55453 * 77.30070 * 12 10 9 14 14 C 1.53035 * 117.50041 * 223.03934 * 12 10 9 15 15 C 1.52818 * 59.95399 * 107.47385 * 14 12 10 16 16 C 1.53195 * 117.69781 * 107.69017 * 15 14 12 17 17 C 1.53449 * 107.65483 * 100.89928 * 16 15 14 18 18 C 1.52583 * 109.05544 * 65.86676 * 17 16 15 19 19 C 1.50458 * 111.35426 * 305.78494 * 18 17 16 20 20 C 1.38806 * 118.44052 * 201.43667 * 19 18 17 21 21 C 1.37999 * 120.40920 * 180.27140 * 20 19 18 22 22 C 1.38261 * 119.97909 * 0.02562 * 21 20 19 23 23 C 1.38097 * 119.75611 * 359.84940 * 22 21 20 24 24 C 1.37932 * 122.10994 * 21.49173 * 19 18 17 25 25 H 0.97000 * 120.00064 * 180.02562 * 1 2 3 26 26 H 1.09003 * 117.50648 * 214.94947 * 14 12 10 27 27 H 1.09000 * 117.50315 * 0.02562 * 14 12 10 28 28 H 1.09000 * 109.81826 * 220.43429 * 16 15 14 29 29 H 1.08996 * 109.81943 * 341.35628 * 16 15 14 30 30 H 1.09000 * 109.54223 * 185.74372 * 17 16 15 31 31 H 1.09004 * 109.53716 * 305.99866 * 17 16 15 32 32 H 1.08998 * 109.10376 * 66.26637 * 18 17 16 33 33 H 1.08996 * 109.10430 * 185.29979 * 18 17 16 34 34 H 1.07994 * 119.79497 * 0.25381 * 20 19 18 35 35 H 1.07992 * 120.00715 * 180.02562 * 21 20 19 36 36 H 1.07999 * 120.11841 * 179.87419 * 22 21 20 37 37 H 1.08003 * 119.87644 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 1.2834 2.7464 0.0006 5 1 3.1023 1.6963 1.2125 6 1 3.1020 1.6966 -1.2125 7 6 2.0083 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0010 9 8 1.3337 -2.3700 -0.0005 10 6 2.0652 -3.4965 -0.0005 11 8 3.2756 -3.4330 -0.0010 12 6 1.3810 -4.8392 -0.0011 13 1 0.9753 -5.1598 -0.9607 14 6 1.9439 -5.9195 0.9253 15 6 0.6155 -5.2417 1.2588 16 6 -0.6665 -6.0616 1.0819 17 6 -1.0995 -6.5534 2.4695 18 6 -1.4948 -5.3519 3.3228 19 6 -0.3935 -4.3278 3.3708 20 6 -0.3805 -3.4197 4.4205 21 6 0.6075 -2.4597 4.5013 22 6 1.5921 -2.3983 3.5326 23 6 1.5835 -3.3020 2.4884 24 6 0.5932 -4.2668 2.4089 25 1 -0.4850 -0.8400 0.0004 26 1 1.9086 -6.9512 0.5752 27 1 2.8087 -5.6588 1.5354 28 1 -1.4484 -5.4365 0.6507 29 1 -0.4729 -6.9143 0.4312 30 1 -1.9519 -7.2252 2.3685 31 1 -0.2720 -7.0810 2.9438 32 1 -2.3896 -4.8939 2.9014 33 1 -1.7119 -5.6899 4.3361 34 1 -1.1485 -3.4645 5.1784 35 1 0.6117 -1.7566 5.3210 36 1 2.3653 -1.6466 3.5926 37 1 2.3519 -3.2560 1.7308 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745717199.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:30 Heat of formation + Delta-G solvation = -32.518938 kcal Electronic energy + Delta-G solvation = -21550.064285 eV Core-core repulsion = 18451.084684 eV Total energy + Delta-G solvation = -3098.979601 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.69028 -38.75046 -36.95010 -35.32114 -34.40355 -32.04925 -30.21205 -29.96121 -27.13705 -25.43467 -23.40864 -22.75872 -22.45827 -20.94039 -19.88243 -18.54343 -18.00333 -16.82654 -15.69768 -15.54370 -15.35844 -14.92115 -14.82392 -13.81408 -13.69934 -13.55157 -13.40874 -12.94938 -12.73700 -12.41798 -12.13970 -11.85511 -11.66044 -11.26372 -11.18292 -10.97420 -10.92462 -10.61813 -10.30503 -10.25069 -10.15783 -10.05764 -9.72465 -9.70478 -9.01094 -8.50469 -8.16395 -7.98117 -6.71038 -4.07221 1.79642 1.92400 3.18269 3.28965 3.46605 3.50957 3.77293 4.07248 4.38271 4.46428 4.75942 4.81284 4.89363 5.07065 5.21153 5.23980 5.31884 5.41284 5.46175 5.62346 5.63527 5.79240 5.85693 5.87934 5.90070 6.00574 6.05196 6.16146 6.24691 6.32808 6.37103 6.54456 6.57904 6.64298 6.96153 7.09579 7.18578 7.53022 7.62300 8.43944 8.50094 9.08482 9.78718 10.73526 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.019517 B = 0.007621 C = 0.006460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.273163 B = 3673.215473 C = 4333.435892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.017 3.983 3 Si 1.093 2.907 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.461 4.461 8 H 0.085 0.915 9 O -0.224 6.224 10 C 0.433 3.567 11 O -0.557 6.557 12 C -0.137 4.137 13 H 0.130 0.870 14 C -0.137 4.137 15 C -0.067 4.067 16 C -0.081 4.081 17 C -0.113 4.113 18 C -0.076 4.076 19 C -0.078 4.078 20 C -0.132 4.132 21 C -0.121 4.121 22 C -0.107 4.107 23 C -0.108 4.108 24 C -0.046 4.046 25 H 0.282 0.718 26 H 0.106 0.894 27 H 0.101 0.899 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.074 -10.790 6.547 12.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.189 4.189 3 Si 0.918 3.082 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.537 4.537 8 H 0.103 0.897 9 O -0.132 6.132 10 C 0.282 3.718 11 O -0.456 6.456 12 C -0.156 4.156 13 H 0.147 0.853 14 C -0.174 4.174 15 C -0.067 4.067 16 C -0.118 4.118 17 C -0.151 4.151 18 C -0.113 4.113 19 C -0.078 4.078 20 C -0.150 4.150 21 C -0.139 4.139 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.046 4.046 25 H 0.092 0.908 26 H 0.124 0.876 27 H 0.120 0.880 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.020 -9.073 6.551 11.591 hybrid contribution 0.295 -1.482 -0.157 1.519 sum -2.725 -10.555 6.394 12.638 Atomic orbital electron populations 1.70524 1.06583 1.31649 1.42134 1.26489 0.96733 1.00946 0.94749 0.83151 0.74477 0.73365 0.77252 1.19910 1.20738 1.20753 1.22029 0.93560 0.81308 1.56760 0.89707 1.83705 1.40255 1.13790 1.75402 1.21571 0.86133 0.85969 0.78085 1.90601 1.15272 1.87711 1.52046 1.21843 1.04223 0.92857 0.96701 0.85255 1.23193 0.96506 0.96520 1.01178 1.20236 0.93705 0.98987 0.93792 1.21258 0.95100 0.98283 0.97196 1.21458 1.01021 0.97120 0.95452 1.20324 0.96559 0.94240 1.00217 1.19431 0.96036 0.97397 0.94917 1.20918 0.99126 0.96446 0.98465 1.21004 0.95340 0.98423 0.99159 1.21027 0.98904 0.98334 0.94199 1.21885 0.99127 0.93638 0.97863 1.18619 0.95633 0.95954 0.94376 0.90833 0.87607 0.88019 0.90782 0.91188 0.91522 0.91595 0.90891 0.91247 0.86765 0.86653 0.86339 0.83752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.20 13.69 55.48 0.76 -25.44 16 2 C 0.02 0.49 5.49 -17.53 -0.10 0.39 16 3 Si 1.09 24.77 29.92 -169.99 -5.09 19.69 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.46 -13.54 9.37 30.92 0.29 -13.25 16 8 H 0.09 2.56 6.86 -52.49 -0.36 2.20 16 9 O -0.22 -6.31 7.87 -20.70 -0.16 -6.47 16 10 C 0.43 10.83 4.16 36.01 0.15 10.98 16 11 O -0.56 -15.20 15.31 -19.05 -0.29 -15.49 16 12 C -0.14 -2.63 5.99 -91.84 -0.55 -3.18 16 13 H 0.13 2.17 8.14 -51.93 -0.42 1.74 16 14 C -0.14 -2.19 9.28 -26.81 -0.25 -2.44 16 15 C -0.07 -1.14 2.24 -155.70 -0.35 -1.48 16 16 C -0.08 -1.07 5.73 -26.40 -0.15 -1.22 16 17 C -0.11 -1.30 5.92 -26.71 -0.16 -1.46 16 18 C -0.08 -0.99 5.66 -28.21 -0.16 -1.15 16 19 C -0.08 -1.32 5.75 -104.64 -0.60 -1.92 16 20 C -0.13 -2.17 9.63 -39.46 -0.38 -2.55 16 21 C -0.12 -2.15 10.04 -39.66 -0.40 -2.54 16 22 C -0.11 -2.20 10.06 -39.62 -0.40 -2.60 16 23 C -0.11 -2.38 7.11 -39.54 -0.28 -2.66 16 24 C -0.05 -0.89 5.55 -104.60 -0.58 -1.47 16 25 H 0.28 8.63 7.97 -40.82 -0.33 8.31 16 26 H 0.11 1.30 8.13 -51.93 -0.42 0.88 16 27 H 0.10 1.76 8.01 -51.93 -0.42 1.35 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.07 0.76 8.03 -51.93 -0.42 0.35 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.76 8.13 -51.93 -0.42 0.33 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 34 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 36 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 37 H 0.15 3.57 3.25 -56.04 -0.18 3.39 16 LS Contribution 305.30 15.07 4.60 4.60 Total: -1.00 -33.34 305.30 -8.81 -42.15 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -4.72 Total: 7.53 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -3.91 Total: -26.56 kcal Atomic # 7 Polarization: -26.20 SS G_CDS: 0.76 Total: -25.44 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.45 Total: -21.97 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.09 Total: 19.69 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.34 -8.81 -42.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745717199.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.631 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds