Wall clock time and date at job start Mon Mar 30 2020 01:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86806 * 119.99960 * 2 1 4 4 H 1.48496 * 109.46840 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46860 * 120.00604 * 3 2 1 6 6 H 1.48497 * 109.47302 * 240.00637 * 3 2 1 7 7 C 1.38759 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00162 * 179.97438 * 7 2 1 9 9 O 1.34915 * 119.99532 * 359.97438 * 7 2 1 10 10 C 1.34315 * 116.99596 * 180.02562 * 9 7 2 11 11 O 1.21205 * 120.00165 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99718 * 180.02562 * 10 9 7 13 13 H 1.08999 * 115.55453 * 77.30070 * 12 10 9 14 14 C 1.53035 * 117.50041 * 223.03934 * 12 10 9 15 15 C 1.52818 * 59.95399 * 107.47385 * 14 12 10 16 16 C 1.53195 * 117.69781 * 107.69017 * 15 14 12 17 17 C 1.53449 * 107.65483 * 100.89928 * 16 15 14 18 18 C 1.52583 * 109.05544 * 65.86676 * 17 16 15 19 19 C 1.50458 * 111.35426 * 305.78494 * 18 17 16 20 20 C 1.38806 * 118.44052 * 201.43667 * 19 18 17 21 21 C 1.37999 * 120.40920 * 180.27140 * 20 19 18 22 22 C 1.38261 * 119.97909 * 0.02562 * 21 20 19 23 23 C 1.38097 * 119.75611 * 359.84940 * 22 21 20 24 24 C 1.37932 * 122.10994 * 21.49173 * 19 18 17 25 25 H 0.97000 * 120.00064 * 180.02562 * 1 2 3 26 26 H 1.09003 * 117.50648 * 214.94947 * 14 12 10 27 27 H 1.09000 * 117.50315 * 0.02562 * 14 12 10 28 28 H 1.09000 * 109.81826 * 220.43429 * 16 15 14 29 29 H 1.08996 * 109.81943 * 341.35628 * 16 15 14 30 30 H 1.09000 * 109.54223 * 185.74372 * 17 16 15 31 31 H 1.09004 * 109.53716 * 305.99866 * 17 16 15 32 32 H 1.08998 * 109.10376 * 66.26637 * 18 17 16 33 33 H 1.08996 * 109.10430 * 185.29979 * 18 17 16 34 34 H 1.07994 * 119.79497 * 0.25381 * 20 19 18 35 35 H 1.07992 * 120.00715 * 180.02562 * 21 20 19 36 36 H 1.07999 * 120.11841 * 179.87419 * 22 21 20 37 37 H 1.08003 * 119.87644 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 1.2834 2.7464 0.0006 5 1 3.1023 1.6963 1.2125 6 1 3.1020 1.6966 -1.2125 7 6 2.0083 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0010 9 8 1.3337 -2.3700 -0.0005 10 6 2.0652 -3.4965 -0.0005 11 8 3.2756 -3.4330 -0.0010 12 6 1.3810 -4.8392 -0.0011 13 1 0.9753 -5.1598 -0.9607 14 6 1.9439 -5.9195 0.9253 15 6 0.6155 -5.2417 1.2588 16 6 -0.6665 -6.0616 1.0819 17 6 -1.0995 -6.5534 2.4695 18 6 -1.4948 -5.3519 3.3228 19 6 -0.3935 -4.3278 3.3708 20 6 -0.3805 -3.4197 4.4205 21 6 0.6075 -2.4597 4.5013 22 6 1.5921 -2.3983 3.5326 23 6 1.5835 -3.3020 2.4884 24 6 0.5932 -4.2668 2.4089 25 1 -0.4850 -0.8400 0.0004 26 1 1.9086 -6.9512 0.5752 27 1 2.8087 -5.6588 1.5354 28 1 -1.4484 -5.4365 0.6507 29 1 -0.4729 -6.9143 0.4312 30 1 -1.9519 -7.2252 2.3685 31 1 -0.2720 -7.0810 2.9438 32 1 -2.3896 -4.8939 2.9014 33 1 -1.7119 -5.6899 4.3361 34 1 -1.1485 -3.4645 5.1784 35 1 0.6117 -1.7566 5.3210 36 1 2.3653 -1.6466 3.5926 37 1 2.3519 -3.2560 1.7308 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745717199.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:30 Heat of formation + Delta-G solvation = -51.081528 kcal Electronic energy + Delta-G solvation = -21550.869219 eV Core-core repulsion = 18451.084684 eV Total energy + Delta-G solvation = -3099.784535 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.29334 -40.50558 -38.42219 -37.28259 -35.70228 -34.25455 -31.60618 -31.25801 -28.44689 -27.37377 -25.26288 -24.04447 -23.73493 -22.24984 -21.69130 -20.18447 -19.74639 -18.65459 -17.54195 -17.28935 -16.85741 -16.39306 -16.13385 -15.63364 -15.24736 -15.09490 -14.65278 -14.25363 -14.13345 -13.74307 -13.58581 -13.24804 -13.10881 -13.09213 -12.92172 -12.43469 -12.24614 -12.07249 -11.99036 -11.90470 -11.87517 -11.43412 -11.33855 -11.15823 -10.81508 -10.67635 -9.62892 -9.38133 -9.02133 -6.39395 0.35951 0.45663 1.28570 1.41750 1.63088 1.73118 2.11729 2.45324 2.67552 2.99126 3.00064 3.46085 3.58204 3.67672 3.82155 4.00442 4.08976 4.15752 4.28095 4.33052 4.43873 4.51469 4.60697 4.66176 4.70096 4.84025 4.90594 4.97748 5.03780 5.05893 5.10575 5.19255 5.28826 5.29871 5.46330 5.56510 5.66034 5.72617 6.12279 6.15521 6.36647 6.88733 7.62872 8.43488 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.019517 B = 0.007621 C = 0.006460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.273163 B = 3673.215473 C = 4333.435892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C -0.022 4.022 3 Si 1.135 2.865 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.481 4.481 8 H 0.063 0.937 9 O -0.248 6.248 10 C 0.441 3.559 11 O -0.591 6.591 12 C -0.170 4.170 13 H 0.157 0.843 14 C -0.114 4.114 15 C -0.059 4.059 16 C -0.078 4.078 17 C -0.108 4.108 18 C -0.078 4.078 19 C -0.077 4.077 20 C -0.130 4.130 21 C -0.124 4.124 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.068 4.068 25 H 0.264 0.736 26 H 0.156 0.844 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.156 0.844 35 H 0.143 0.857 36 H 0.102 0.898 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.210 -13.036 7.639 15.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.221 4.221 3 Si 0.951 3.049 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.081 0.919 9 O -0.157 6.157 10 C 0.292 3.708 11 O -0.491 6.491 12 C -0.188 4.188 13 H 0.175 0.825 14 C -0.151 4.151 15 C -0.059 4.059 16 C -0.116 4.116 17 C -0.145 4.145 18 C -0.115 4.115 19 C -0.077 4.077 20 C -0.147 4.147 21 C -0.141 4.141 22 C -0.159 4.159 23 C -0.160 4.160 24 C -0.068 4.068 25 H 0.073 0.927 26 H 0.173 0.827 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.173 0.827 35 H 0.160 0.840 36 H 0.120 0.880 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.152 -11.353 7.641 14.623 hybrid contribution 1.017 -0.897 -0.427 1.421 sum -4.136 -12.249 7.214 14.805 Atomic orbital electron populations 1.70655 1.07229 1.30373 1.44474 1.28148 0.96831 1.04048 0.93122 0.82718 0.74031 0.69604 0.78514 1.18567 1.19230 1.18956 1.22050 0.92786 0.82741 1.58105 0.91892 1.83739 1.40786 1.14336 1.76792 1.22803 0.86055 0.87202 0.74749 1.90552 1.17143 1.88442 1.52964 1.22041 1.07042 0.90253 0.99481 0.82535 1.23350 0.95317 0.97713 0.98716 1.20533 0.96060 0.98428 0.90921 1.21385 0.92395 0.98503 0.99277 1.21491 1.02551 0.96828 0.93637 1.20486 0.94755 0.93709 1.02532 1.20034 0.95952 0.98077 0.93659 1.21459 0.99078 0.95142 0.99048 1.21325 0.94624 0.99347 0.98854 1.21110 1.00358 0.98698 0.95769 1.21734 1.00005 0.96212 0.98025 1.18992 0.95624 0.96033 0.96196 0.92696 0.82675 0.90418 0.91537 0.87954 0.87957 0.91177 0.90227 0.88332 0.82677 0.83965 0.87953 0.87500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -55.35 13.69 21.63 0.30 -55.06 16 2 C -0.02 -1.29 5.49 84.88 0.47 -0.82 16 3 Si 1.14 50.93 29.92 68.60 2.05 52.98 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.48 -30.06 9.37 67.94 0.64 -29.42 16 8 H 0.06 4.10 6.86 -2.91 -0.02 4.08 16 9 O -0.25 -14.84 7.87 14.89 0.12 -14.72 16 10 C 0.44 23.29 4.16 71.24 0.30 23.58 16 11 O -0.59 -34.47 15.31 20.79 0.32 -34.15 16 12 C -0.17 -6.50 5.99 -11.59 -0.07 -6.57 16 13 H 0.16 5.05 8.14 -2.39 -0.02 5.03 16 14 C -0.11 -3.48 9.28 30.55 0.28 -3.20 16 15 C -0.06 -1.92 2.24 -52.95 -0.12 -2.04 16 16 C -0.08 -1.76 5.73 30.81 0.18 -1.58 16 17 C -0.11 -1.92 5.92 30.61 0.18 -1.73 16 18 C -0.08 -1.67 5.66 29.63 0.17 -1.50 16 19 C -0.08 -2.46 5.75 -19.88 -0.11 -2.57 16 20 C -0.13 -3.98 9.63 22.35 0.22 -3.76 16 21 C -0.12 -4.36 10.04 22.22 0.22 -4.14 16 22 C -0.14 -6.20 10.06 22.24 0.22 -5.98 16 23 C -0.14 -6.65 7.11 22.30 0.16 -6.49 16 24 C -0.07 -2.65 5.55 -19.85 -0.11 -2.76 16 25 H 0.26 16.97 7.97 -92.71 -0.74 16.23 16 26 H 0.16 3.15 8.13 -2.39 -0.02 3.13 16 27 H 0.08 2.75 8.01 -2.39 -0.02 2.73 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.10 1.66 8.03 -2.39 -0.02 1.64 16 30 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.23 8.13 -2.38 -0.02 1.21 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.10 1.59 8.10 -2.39 -0.02 1.57 16 34 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 35 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 36 H 0.10 4.57 8.06 -2.91 -0.02 4.55 16 37 H 0.11 5.76 3.25 -6.25 -0.02 5.74 16 Total: -1.00 -79.99 305.30 6.50 -73.49 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 1.10 Total: 26.44 kcal Atomic # 6 Polarization: -51.60 SS G_CDS: 2.62 Total: -48.99 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.30 Total: -55.06 kcal Atomic # 8 Polarization: -49.31 SS G_CDS: 0.44 Total: -48.87 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 2.05 Total: 52.98 kcal Total: -79.99 6.50 -73.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745717199.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.411 kcal (2) G-P(sol) polarization free energy of solvation -79.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds