Wall clock time and date at job start Mon Mar 30 2020 01:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31434 * 1 3 3 Si 1.86807 * 119.99921 * 2 1 4 4 H 1.48500 * 109.47016 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47036 * 299.99904 * 3 2 1 6 6 H 1.48502 * 109.46856 * 59.99873 * 3 2 1 7 7 C 1.38755 * 120.00374 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99947 * 179.97438 * 7 2 1 9 9 O 1.34919 * 119.99717 * 0.02562 * 7 2 1 10 10 C 1.34315 * 116.99961 * 180.02562 * 9 7 2 11 11 O 1.21219 * 119.99949 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00074 * 179.97438 * 10 9 7 13 13 H 1.08999 * 115.56643 * 325.70378 * 12 10 9 14 14 C 1.53038 * 117.50244 * 111.41793 * 12 10 9 15 15 C 1.52809 * 117.50238 * 179.97438 * 12 10 9 16 16 C 1.53201 * 117.78300 * 0.14700 * 15 12 10 17 17 C 1.53461 * 107.62101 * 190.62704 * 16 15 12 18 18 C 1.52580 * 109.07596 * 294.09203 * 17 16 15 19 19 C 1.50456 * 111.37294 * 54.07481 * 18 17 16 20 20 C 1.38808 * 118.43978 * 158.33173 * 19 18 17 21 21 C 1.37985 * 120.44308 * 179.48611 * 20 19 18 22 22 C 1.38250 * 119.97686 * 0.52590 * 21 20 19 23 23 C 1.38129 * 119.74553 * 359.86832 * 22 21 20 24 24 C 1.37943 * 122.14185 * 338.60834 * 19 18 17 25 25 H 0.97001 * 120.00514 * 0.02562 * 1 2 3 26 26 H 1.08992 * 117.50113 * 0.02562 * 14 12 10 27 27 H 1.08998 * 117.49964 * 214.95153 * 14 12 10 28 28 H 1.08996 * 109.83145 * 71.09232 * 16 15 12 29 29 H 1.09004 * 109.87623 * 310.18416 * 16 15 12 30 30 H 1.09002 * 109.53374 * 174.21375 * 17 16 15 31 31 H 1.09004 * 109.53922 * 53.97447 * 17 16 15 32 32 H 1.09004 * 109.10081 * 293.58799 * 18 17 16 33 33 H 1.09005 * 109.05118 * 174.52927 * 18 17 16 34 34 H 1.07994 * 119.77621 * 359.73019 * 20 19 18 35 35 H 1.08002 * 120.01082 * 180.26094 * 21 20 19 36 36 H 1.08001 * 120.12977 * 179.89241 * 22 21 20 37 37 H 1.07999 * 119.87228 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.7083 1.3464 0.0006 5 1 1.8896 2.3964 -1.2125 6 1 1.8895 2.3965 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2015 0.0001 9 8 1.3336 -2.3701 0.0005 10 6 2.0652 -3.4965 0.0016 11 8 3.2757 -3.4330 0.0020 12 6 1.3811 -4.8392 0.0023 13 1 0.4435 -4.8892 0.5560 14 6 1.5024 -5.6948 -1.2608 15 6 2.2684 -6.0832 0.0029 16 6 3.7866 -5.8775 0.0062 17 6 4.4405 -7.2394 -0.2635 18 6 4.1506 -8.1726 0.9083 19 6 2.6744 -8.2627 1.1852 20 6 2.1977 -9.3685 1.8758 21 6 0.8530 -9.4881 2.1613 22 6 -0.0305 -8.5077 1.7494 23 6 0.4391 -7.4099 1.0550 24 6 1.7893 -7.2892 0.7711 25 1 -0.4851 0.8400 -0.0004 26 1 2.0774 -5.2866 -2.0919 27 1 0.6447 -6.3076 -1.5379 28 1 4.1064 -5.4996 0.9773 29 1 4.0666 -5.1715 -0.7756 30 1 5.5178 -7.1117 -0.3699 31 1 4.0306 -7.6657 -1.1791 32 1 4.6579 -7.7974 1.7971 33 1 4.5308 -9.1669 0.6738 34 1 2.8844 -10.1384 2.1951 35 1 0.4903 -10.3493 2.7027 36 1 -1.0837 -8.5997 1.9701 37 1 -0.2493 -6.6430 0.7318 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745717203.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:32 Heat of formation + Delta-G solvation = -39.289981 kcal Electronic energy + Delta-G solvation = -20489.602063 eV Core-core repulsion = 17390.328848 eV Total energy + Delta-G solvation = -3099.273215 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.54972 -38.89629 -37.00076 -35.00913 -34.56089 -32.11893 -30.55158 -30.16913 -27.22467 -25.73101 -23.54100 -22.96616 -22.57465 -21.31686 -19.43520 -18.55511 -17.73368 -16.85389 -16.23285 -15.30425 -15.24535 -14.78449 -14.56782 -14.34856 -13.94358 -13.67206 -13.36040 -13.06732 -12.87942 -12.56642 -12.22656 -11.97967 -11.82706 -11.52590 -11.26885 -11.26094 -11.06911 -10.87785 -10.47540 -10.39304 -10.29534 -9.93594 -9.78947 -9.62750 -8.82864 -8.65896 -8.56271 -8.31933 -6.39427 -4.06883 1.37749 1.41934 3.07092 3.19727 3.27205 3.34604 3.72007 3.91883 4.34757 4.41351 4.72005 4.80936 4.92830 4.99806 5.05834 5.10806 5.22806 5.29487 5.36123 5.39693 5.48101 5.64278 5.65199 5.88545 5.95135 6.00942 6.04502 6.10154 6.13762 6.23516 6.25768 6.49267 6.54974 6.64634 6.76401 6.81065 6.90377 7.06986 7.42104 7.97583 8.74890 9.09511 9.90436 10.78802 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.029816 B = 0.004481 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.864276 B = 6247.152530 C = 6829.339438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.380 4.380 8 H 0.096 0.904 9 O -0.211 6.211 10 C 0.427 3.573 11 O -0.549 6.549 12 C -0.132 4.132 13 H 0.124 0.876 14 C -0.139 4.139 15 C -0.062 4.062 16 C -0.071 4.071 17 C -0.121 4.121 18 C -0.080 4.080 19 C -0.070 4.070 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.032 4.032 25 H 0.269 0.731 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.571 -17.147 1.196 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.457 4.457 8 H 0.114 0.886 9 O -0.118 6.118 10 C 0.274 3.726 11 O -0.447 6.447 12 C -0.151 4.151 13 H 0.142 0.858 14 C -0.176 4.176 15 C -0.062 4.062 16 C -0.108 4.108 17 C -0.159 4.159 18 C -0.117 4.117 19 C -0.070 4.070 20 C -0.142 4.142 21 C -0.144 4.144 22 C -0.141 4.141 23 C -0.136 4.136 24 C -0.032 4.032 25 H 0.078 0.922 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.699 -16.953 1.196 17.208 hybrid contribution 0.098 0.824 0.157 0.844 sum 2.797 -16.129 1.354 16.426 Atomic orbital electron populations 1.70002 1.06009 1.27526 1.46673 1.25333 0.95797 0.98841 0.96269 0.85629 0.79469 0.80141 0.78104 1.18950 1.20184 1.20191 1.21283 0.92390 0.79821 1.52187 0.88613 1.83865 1.39348 1.13236 1.75322 1.22040 0.86044 0.86051 0.78494 1.90530 1.15331 1.87680 1.51114 1.21732 1.01213 0.88138 1.04015 0.85810 1.23155 1.02219 1.01077 0.91135 1.20210 0.95000 0.91617 0.99383 1.21329 0.89729 0.95520 1.04218 1.21615 1.00502 0.96088 0.97657 1.20396 0.91696 1.00150 0.99449 1.19638 0.95568 0.93922 0.97848 1.21075 0.95661 0.97757 0.99676 1.21013 0.93533 0.99168 1.00727 1.21067 0.99583 0.94444 0.98993 1.21167 0.95138 0.98196 0.99077 1.18853 0.92786 0.93996 0.97546 0.92160 0.87801 0.87940 0.90984 0.89134 0.91522 0.91938 0.90706 0.91244 0.86370 0.86395 0.86133 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.61 13.67 55.48 0.76 -24.86 16 2 C 0.04 1.18 5.49 -17.53 -0.10 1.08 16 3 Si 0.94 21.45 29.55 -169.99 -5.02 16.42 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.38 -11.35 9.65 30.92 0.30 -11.05 16 8 H 0.10 2.86 6.86 -52.49 -0.36 2.50 16 9 O -0.21 -6.14 9.75 -20.71 -0.20 -6.34 16 10 C 0.43 10.63 7.67 36.00 0.28 10.91 16 11 O -0.55 -14.27 12.41 -19.06 -0.24 -14.51 16 12 C -0.13 -2.53 5.58 -91.85 -0.51 -3.04 16 13 H 0.12 2.23 6.57 -51.93 -0.34 1.89 16 14 C -0.14 -2.20 9.33 -26.82 -0.25 -2.45 16 15 C -0.06 -1.02 2.23 -155.71 -0.35 -1.36 16 16 C -0.07 -1.17 4.01 -26.39 -0.11 -1.28 16 17 C -0.12 -1.55 5.92 -26.71 -0.16 -1.71 16 18 C -0.08 -0.94 5.66 -28.22 -0.16 -1.10 16 19 C -0.07 -0.93 5.75 -104.64 -0.60 -1.53 16 20 C -0.12 -1.43 9.63 -39.46 -0.38 -1.81 16 21 C -0.13 -1.40 10.04 -39.67 -0.40 -1.80 16 22 C -0.12 -1.45 10.06 -39.62 -0.40 -1.85 16 23 C -0.12 -1.61 8.91 -39.53 -0.35 -1.96 16 24 C -0.03 -0.47 5.60 -104.59 -0.59 -1.06 16 25 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 27 H 0.10 1.37 8.02 -51.93 -0.42 0.96 16 28 H 0.07 1.31 7.90 -51.93 -0.41 0.90 16 29 H 0.09 1.68 6.47 -51.93 -0.34 1.35 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 34 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 35 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.12 1.63 6.32 -52.49 -0.33 1.30 16 LS Contribution 307.48 15.07 4.63 4.63 Total: -1.00 -32.59 307.48 -8.55 -41.14 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -4.71 Total: 3.51 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -3.77 Total: -20.00 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.76 Total: -24.86 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.44 Total: -20.85 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.59 -8.55 -41.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745717203.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.851 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds