Wall clock time and date at job start Mon Mar 30 2020 01:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31434 * 1 3 3 Si 1.86807 * 119.99921 * 2 1 4 4 H 1.48500 * 109.47016 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47036 * 299.99904 * 3 2 1 6 6 H 1.48502 * 109.46856 * 59.99873 * 3 2 1 7 7 C 1.38755 * 120.00374 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99947 * 179.97438 * 7 2 1 9 9 O 1.34919 * 119.99717 * 0.02562 * 7 2 1 10 10 C 1.34315 * 116.99961 * 180.02562 * 9 7 2 11 11 O 1.21219 * 119.99949 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00074 * 179.97438 * 10 9 7 13 13 H 1.08999 * 115.56643 * 325.70378 * 12 10 9 14 14 C 1.53038 * 117.50244 * 111.41793 * 12 10 9 15 15 C 1.52809 * 117.50238 * 179.97438 * 12 10 9 16 16 C 1.53201 * 117.78300 * 0.14700 * 15 12 10 17 17 C 1.53461 * 107.62101 * 190.62704 * 16 15 12 18 18 C 1.52580 * 109.07596 * 294.09203 * 17 16 15 19 19 C 1.50456 * 111.37294 * 54.07481 * 18 17 16 20 20 C 1.38808 * 118.43978 * 158.33173 * 19 18 17 21 21 C 1.37985 * 120.44308 * 179.48611 * 20 19 18 22 22 C 1.38250 * 119.97686 * 0.52590 * 21 20 19 23 23 C 1.38129 * 119.74553 * 359.86832 * 22 21 20 24 24 C 1.37943 * 122.14185 * 338.60834 * 19 18 17 25 25 H 0.97001 * 120.00514 * 0.02562 * 1 2 3 26 26 H 1.08992 * 117.50113 * 0.02562 * 14 12 10 27 27 H 1.08998 * 117.49964 * 214.95153 * 14 12 10 28 28 H 1.08996 * 109.83145 * 71.09232 * 16 15 12 29 29 H 1.09004 * 109.87623 * 310.18416 * 16 15 12 30 30 H 1.09002 * 109.53374 * 174.21375 * 17 16 15 31 31 H 1.09004 * 109.53922 * 53.97447 * 17 16 15 32 32 H 1.09004 * 109.10081 * 293.58799 * 18 17 16 33 33 H 1.09005 * 109.05118 * 174.52927 * 18 17 16 34 34 H 1.07994 * 119.77621 * 359.73019 * 20 19 18 35 35 H 1.08002 * 120.01082 * 180.26094 * 21 20 19 36 36 H 1.08001 * 120.12977 * 179.89241 * 22 21 20 37 37 H 1.07999 * 119.87228 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.7083 1.3464 0.0006 5 1 1.8896 2.3964 -1.2125 6 1 1.8895 2.3965 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2015 0.0001 9 8 1.3336 -2.3701 0.0005 10 6 2.0652 -3.4965 0.0016 11 8 3.2757 -3.4330 0.0020 12 6 1.3811 -4.8392 0.0023 13 1 0.4435 -4.8892 0.5560 14 6 1.5024 -5.6948 -1.2608 15 6 2.2684 -6.0832 0.0029 16 6 3.7866 -5.8775 0.0062 17 6 4.4405 -7.2394 -0.2635 18 6 4.1506 -8.1726 0.9083 19 6 2.6744 -8.2627 1.1852 20 6 2.1977 -9.3685 1.8758 21 6 0.8530 -9.4881 2.1613 22 6 -0.0305 -8.5077 1.7494 23 6 0.4391 -7.4099 1.0550 24 6 1.7893 -7.2892 0.7711 25 1 -0.4851 0.8400 -0.0004 26 1 2.0774 -5.2866 -2.0919 27 1 0.6447 -6.3076 -1.5379 28 1 4.1064 -5.4996 0.9773 29 1 4.0666 -5.1715 -0.7756 30 1 5.5178 -7.1117 -0.3699 31 1 4.0306 -7.6657 -1.1791 32 1 4.6579 -7.7974 1.7971 33 1 4.5308 -9.1669 0.6738 34 1 2.8844 -10.1384 2.1951 35 1 0.4903 -10.3493 2.7027 36 1 -1.0837 -8.5997 1.9701 37 1 -0.2493 -6.6430 0.7318 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745717203.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:32 Heat of formation + Delta-G solvation = -56.524964 kcal Electronic energy + Delta-G solvation = -20490.349428 eV Core-core repulsion = 17390.328848 eV Total energy + Delta-G solvation = -3100.020580 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.88879 -40.61420 -38.43078 -36.79118 -35.83286 -34.31385 -31.58395 -31.18616 -28.54232 -27.65262 -25.30713 -23.96726 -23.64463 -22.53030 -21.07318 -19.96887 -19.67764 -18.55717 -17.50707 -16.81937 -16.49297 -16.26077 -16.15971 -16.13813 -15.22883 -15.02276 -14.51073 -14.31134 -14.09157 -13.92486 -13.58209 -13.53084 -13.24582 -13.02406 -12.93244 -12.43250 -12.34753 -12.19198 -12.07295 -12.02077 -12.00728 -11.45252 -11.16350 -11.01338 -10.71929 -10.68428 -9.62599 -9.36667 -8.55812 -6.35890 0.39298 0.49278 1.24470 1.32098 1.51054 1.55201 2.07480 2.53835 2.69903 2.93207 3.11270 3.48682 3.65037 3.74523 3.83027 3.99254 4.13853 4.26028 4.28972 4.34439 4.45171 4.53577 4.65077 4.67081 4.78526 4.83449 4.93927 4.96140 5.04249 5.06867 5.15951 5.17869 5.21161 5.37561 5.46832 5.64215 5.67114 5.79283 5.82068 6.14785 6.65553 6.89092 7.77754 8.65495 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.029816 B = 0.004481 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.864276 B = 6247.152530 C = 6829.339438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.005 4.005 3 Si 1.019 2.981 4 H -0.264 1.264 5 H -0.258 1.258 6 H -0.260 1.260 7 C -0.421 4.421 8 H 0.082 0.918 9 O -0.245 6.245 10 C 0.425 3.575 11 O -0.566 6.566 12 C -0.161 4.161 13 H 0.132 0.868 14 C -0.119 4.119 15 C -0.045 4.045 16 C -0.072 4.072 17 C -0.112 4.112 18 C -0.078 4.078 19 C -0.082 4.082 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.127 4.127 23 C -0.133 4.133 24 C -0.058 4.058 25 H 0.279 0.721 26 H 0.098 0.902 27 H 0.133 0.867 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.778 -19.271 1.610 19.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.205 4.205 3 Si 0.837 3.163 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.184 1.184 7 C -0.496 4.496 8 H 0.100 0.900 9 O -0.154 6.154 10 C 0.273 3.727 11 O -0.464 6.464 12 C -0.180 4.180 13 H 0.150 0.850 14 C -0.156 4.156 15 C -0.045 4.045 16 C -0.109 4.109 17 C -0.150 4.150 18 C -0.115 4.115 19 C -0.082 4.082 20 C -0.141 4.141 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.151 4.151 24 C -0.058 4.058 25 H 0.088 0.912 26 H 0.116 0.884 27 H 0.151 0.849 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.118 0.882 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.160 0.840 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.902 -19.105 1.609 19.391 hybrid contribution 0.034 1.340 0.064 1.342 sum 2.936 -17.765 1.673 18.084 Atomic orbital electron populations 1.70087 1.07720 1.29314 1.47064 1.26569 0.96891 1.02378 0.94668 0.84559 0.77762 0.74643 0.79304 1.18826 1.18269 1.18415 1.21485 0.92168 0.81132 1.54848 0.90019 1.83891 1.40470 1.14191 1.76806 1.23183 0.86211 0.87023 0.76322 1.90504 1.16336 1.88207 1.51344 1.21776 1.02405 0.86059 1.07756 0.85046 1.23287 1.02978 0.99325 0.90026 1.20288 0.94336 0.90580 0.99328 1.21223 0.90600 0.97434 1.01687 1.21558 1.00956 0.93745 0.98724 1.20433 0.91073 1.01284 0.98724 1.19895 0.96041 0.94184 0.98039 1.21417 0.96522 0.97558 0.98636 1.21437 0.93268 0.99564 0.99631 1.21371 1.01026 0.93864 0.98233 1.21265 0.94751 0.99089 0.99974 1.18829 0.93786 0.93895 0.99317 0.91191 0.88390 0.84860 0.93522 0.92049 0.90123 0.91165 0.90680 0.88201 0.83520 0.83307 0.84026 0.86132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.85 13.67 21.62 0.30 -54.56 16 2 C -0.01 -0.30 5.49 84.88 0.47 0.17 16 3 Si 1.02 44.45 29.55 68.60 2.03 46.48 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 6 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.42 -26.37 9.65 67.94 0.66 -25.71 16 8 H 0.08 5.17 6.86 -2.91 -0.02 5.15 16 9 O -0.25 -15.14 9.75 14.83 0.14 -15.00 16 10 C 0.42 22.47 7.67 71.23 0.55 23.02 16 11 O -0.57 -31.38 12.41 20.75 0.26 -31.12 16 12 C -0.16 -6.45 5.58 -11.59 -0.06 -6.51 16 13 H 0.13 4.97 6.57 -2.39 -0.02 4.95 16 14 C -0.12 -3.82 9.33 30.54 0.29 -3.53 16 15 C -0.05 -1.50 2.23 -52.96 -0.12 -1.62 16 16 C -0.07 -2.47 4.01 30.82 0.12 -2.34 16 17 C -0.11 -2.74 5.92 30.61 0.18 -2.56 16 18 C -0.08 -1.65 5.66 29.63 0.17 -1.48 16 19 C -0.08 -1.98 5.75 -19.87 -0.11 -2.09 16 20 C -0.12 -2.39 9.63 22.35 0.22 -2.18 16 21 C -0.12 -2.21 10.04 22.21 0.22 -1.99 16 22 C -0.13 -2.67 10.06 22.25 0.22 -2.45 16 23 C -0.13 -3.47 8.91 22.31 0.20 -3.28 16 24 C -0.06 -1.67 5.60 -19.84 -0.11 -1.78 16 25 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 26 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 27 H 0.13 3.41 8.02 -2.39 -0.02 3.39 16 28 H 0.05 1.80 7.90 -2.39 -0.02 1.78 16 29 H 0.06 2.42 6.47 -2.39 -0.02 2.40 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.07 1.61 8.13 -2.38 -0.02 1.59 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.10 1.52 8.10 -2.38 -0.02 1.50 16 34 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 36 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 37 H 0.12 3.13 6.32 -2.91 -0.02 3.11 16 Total: -1.00 -74.66 307.48 6.68 -67.99 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 1.08 Total: 20.54 kcal Atomic # 6 Polarization: -37.21 SS G_CDS: 2.88 Total: -34.33 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.30 Total: -54.56 kcal Atomic # 8 Polarization: -46.52 SS G_CDS: 0.40 Total: -46.12 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -74.66 6.68 -67.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745717203.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.460 kcal (2) G-P(sol) polarization free energy of solvation -74.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds