Wall clock time and date at job start Mon Mar 30 2020 01:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38591 * 119.54798 * 2 1 4 4 C 1.38587 * 119.35676 * 179.97438 * 3 2 1 5 5 C 1.38624 * 118.48874 * 359.74989 * 4 3 2 6 6 C 1.39291 * 119.05773 * 0.51451 * 5 4 3 7 7 C 1.48129 * 119.72380 * 179.75439 * 6 5 4 8 8 O 1.21549 * 120.00155 * 359.72147 * 7 6 5 9 9 N 1.34777 * 120.00280 * 179.72696 * 7 6 5 10 10 C 1.40485 * 120.00429 * 179.97438 * 9 7 6 11 11 C 1.40677 * 126.08655 * 0.02673 * 10 9 7 12 12 N 1.30901 * 108.38561 * 179.71873 * 11 10 9 13 13 N 1.40065 * 108.41652 * 0.40230 * 12 11 10 14 14 C 1.37312 * 126.07092 * 179.85595 * 13 12 11 15 15 H 1.08002 * 120.00634 * 179.69231 * 14 13 12 16 16 C 1.38992 * 119.99460 * 359.41109 * 14 13 12 17 17 N 1.31294 * 120.00157 * 0.27649 * 16 14 13 18 18 Si 1.86803 * 119.99838 * 180.27795 * 16 14 13 19 19 H 1.48498 * 109.47174 * 90.00076 * 18 16 14 20 20 H 1.48501 * 109.47062 * 210.00027 * 18 16 14 21 21 H 1.48504 * 109.46913 * 329.99826 * 18 16 14 22 22 C 1.35709 * 126.09085 * 179.97438 * 10 9 7 23 23 N 1.31495 * 119.54576 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.47337 * 269.97890 * 1 2 3 25 25 H 1.09007 * 109.47502 * 29.98036 * 1 2 3 26 26 H 1.09008 * 109.47340 * 149.97670 * 1 2 3 27 27 H 1.08003 * 120.32303 * 359.97230 * 3 2 1 28 28 H 1.08001 * 120.76210 * 179.97438 * 4 3 2 29 29 H 1.07994 * 120.47177 * 180.26402 * 5 4 3 30 30 H 0.97010 * 119.99512 * 359.97438 * 9 7 6 31 31 H 1.08000 * 125.80703 * 359.96870 * 11 10 9 32 32 H 0.97005 * 119.99961 * 179.97438 * 17 16 14 33 33 H 1.08003 * 126.24468 * 0.02886 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2057 0.0000 4 6 3.5763 1.2010 0.0005 5 6 4.2335 -0.0195 0.0064 6 6 3.4821 -1.1924 0.0005 7 6 4.1692 -2.5047 0.0012 8 8 5.3836 -2.5550 0.0016 9 7 3.4477 -3.6432 0.0011 10 6 4.0993 -4.8878 0.0011 11 6 5.4907 -5.0946 0.0017 12 7 5.7165 -6.3840 0.0077 13 7 4.4838 -7.0491 0.0017 14 6 4.2993 -8.4097 0.0023 15 1 3.2999 -8.8193 0.0024 16 6 5.3988 -9.2601 -0.0030 17 7 6.6137 -8.7623 -0.0031 18 14 5.1478 -11.1111 -0.0100 19 1 5.0789 -11.5960 -1.4119 20 1 6.2841 -11.7673 0.6855 21 1 3.8810 -11.4416 0.6910 22 6 3.4984 -6.1046 0.0015 23 7 2.1554 -1.1440 -0.0005 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6483 2.1398 -0.0005 28 1 4.1318 2.1272 0.0001 29 1 5.3126 -0.0605 0.0113 30 1 2.4784 -3.6031 0.0010 31 1 6.2445 -4.3212 0.0018 32 1 7.3810 -9.3557 -0.0065 33 1 2.4347 -6.2916 0.0015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747433831.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:26 Heat of formation + Delta-G solvation = 84.570026 kcal Electronic energy + Delta-G solvation = -19357.082520 eV Core-core repulsion = 16191.932685 eV Total energy + Delta-G solvation = -3165.149834 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.61526 -39.63483 -38.21193 -34.27370 -33.24815 -33.08593 -32.39020 -30.20976 -28.06783 -27.62716 -25.27560 -24.13838 -22.32971 -21.05482 -20.45626 -19.36782 -17.87388 -17.09211 -16.43901 -16.00179 -15.44026 -15.06667 -14.98735 -14.52625 -14.11172 -13.99017 -13.44055 -13.22853 -13.15255 -12.86646 -12.47863 -12.42516 -12.01615 -11.65871 -11.40336 -11.24615 -10.94371 -10.51888 -10.15366 -10.03870 -9.90268 -9.22699 -9.14994 -9.05749 -8.79287 -8.03757 -6.65643 -6.53962 -4.20276 0.64090 1.10020 2.83498 3.03125 3.06598 3.11875 3.51368 3.60824 3.85802 3.94696 4.08187 4.49800 4.51127 4.70885 4.83304 4.97277 5.02695 5.04338 5.31948 5.38623 5.43704 5.45656 5.80933 5.95775 6.00187 6.28922 6.46443 6.52576 6.92515 6.97854 7.13952 7.25576 7.70975 7.88189 8.22480 8.31916 8.64053 8.86786 9.39722 9.68786 10.42020 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.045141 B = 0.003549 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.132833 B = 7888.187051 C = 8493.165557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.124 3.876 3 C -0.161 4.161 4 C -0.079 4.079 5 C -0.122 4.122 6 C 0.102 3.898 7 C 0.548 3.452 8 O -0.532 6.532 9 N -0.597 5.597 10 C -0.063 4.063 11 C -0.030 4.030 12 N -0.260 5.260 13 N -0.142 5.142 14 C -0.322 4.322 15 H 0.117 0.883 16 C 0.046 3.954 17 N -0.769 5.769 18 Si 0.935 3.065 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.264 1.264 22 C -0.080 4.080 23 N -0.464 5.464 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.136 0.864 28 H 0.140 0.860 29 H 0.149 0.851 30 H 0.407 0.593 31 H 0.177 0.823 32 H 0.275 0.725 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.560 15.816 0.008 19.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.016 4.016 3 C -0.181 4.181 4 C -0.104 4.104 5 C -0.143 4.143 6 C -0.037 4.037 7 C 0.332 3.668 8 O -0.409 6.409 9 N -0.238 5.238 10 C -0.169 4.169 11 C -0.206 4.206 12 N -0.091 5.091 13 N 0.091 4.909 14 C -0.455 4.455 15 H 0.134 0.866 16 C -0.171 4.171 17 N -0.396 5.396 18 Si 0.759 3.241 19 H -0.196 1.196 20 H -0.201 1.201 21 H -0.188 1.188 22 C -0.231 4.231 23 N -0.176 5.176 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.154 0.846 28 H 0.158 0.842 29 H 0.167 0.833 30 H 0.242 0.758 31 H 0.194 0.806 32 H 0.085 0.915 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.000 13.956 0.015 16.606 hybrid contribution -0.839 0.759 -0.004 1.131 sum -9.839 14.714 0.011 17.701 Atomic orbital electron populations 1.20727 0.88487 1.03629 1.03233 1.21308 0.97108 0.88048 0.95169 1.22115 0.95048 0.99264 1.01643 1.21596 0.94387 0.98255 0.96209 1.22131 1.02497 0.91702 0.97992 1.21308 0.89312 0.94537 0.98527 1.17649 0.86576 0.82691 0.79870 1.90680 1.12874 1.86168 1.51151 1.42328 1.09680 1.03369 1.68429 1.17307 0.92398 0.83217 1.23955 1.24136 0.93807 0.94962 1.07710 1.78249 1.02074 1.03076 1.25728 1.44558 1.02653 1.04720 1.38977 1.19891 0.95359 0.76881 1.53348 0.86560 1.25651 0.94574 1.01417 0.95486 1.70221 0.98028 1.36090 1.35250 0.85819 0.78834 0.80474 0.78962 1.19593 1.20095 1.18792 1.21278 0.94361 0.87821 1.19657 1.67430 1.08833 1.30001 1.11376 0.90289 0.90700 0.90185 0.84571 0.84216 0.83314 0.75788 0.80641 0.91459 0.83537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 10.17 36.01 0.37 -0.40 16 2 C 0.12 1.35 6.78 -82.61 -0.56 0.79 16 3 C -0.16 -1.44 9.75 -39.32 -0.38 -1.83 16 4 C -0.08 -0.76 10.17 -39.31 -0.40 -1.16 16 5 C -0.12 -1.59 9.63 -39.05 -0.38 -1.97 16 6 C 0.10 1.60 6.75 -83.01 -0.56 1.04 16 7 C 0.55 10.72 7.78 -12.20 -0.09 10.63 16 8 O -0.53 -11.88 13.47 5.32 0.07 -11.80 16 9 N -0.60 -11.92 5.45 -10.77 -0.06 -11.98 16 10 C -0.06 -1.53 6.90 -83.87 -0.58 -2.10 16 11 C -0.03 -0.83 10.85 -17.03 -0.18 -1.01 16 12 N -0.26 -7.72 10.39 30.81 0.32 -7.40 16 13 N -0.14 -3.97 3.74 -11.40 -0.04 -4.02 16 14 C -0.32 -8.66 10.25 -14.82 -0.15 -8.81 16 15 H 0.12 2.78 7.83 -52.49 -0.41 2.37 16 16 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 17 N -0.77 -21.72 11.81 55.50 0.66 -21.07 16 18 Si 0.94 19.10 29.55 -169.99 -5.02 14.08 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 21 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 22 C -0.08 -1.95 11.49 -16.38 -0.19 -2.14 16 23 N -0.46 -6.53 9.45 -6.06 -0.06 -6.59 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 26 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 28 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 29 H 0.15 1.90 7.64 -52.49 -0.40 1.50 16 30 H 0.41 6.98 8.15 -40.82 -0.33 6.64 16 31 H 0.18 4.68 5.92 -52.49 -0.31 4.37 16 32 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.15 3.00 8.06 -52.48 -0.42 2.58 16 LS Contribution 297.58 15.07 4.48 4.48 Total: -1.00 -33.86 297.58 -5.98 -39.84 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -3.12 Total: 10.33 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -3.21 Total: -5.88 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.82 Total: -51.05 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.07 Total: -11.80 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.86 -5.98 -39.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747433831.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.409 kcal (2) G-P(sol) polarization free energy of solvation -33.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds