Wall clock time and date at job start Mon Mar 30 2020 01:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38591 * 119.54798 * 2 1 4 4 C 1.38587 * 119.35676 * 179.97438 * 3 2 1 5 5 C 1.38624 * 118.48874 * 359.74989 * 4 3 2 6 6 C 1.39291 * 119.05773 * 0.51451 * 5 4 3 7 7 C 1.48129 * 119.72380 * 179.75439 * 6 5 4 8 8 O 1.21549 * 120.00155 * 359.72147 * 7 6 5 9 9 N 1.34777 * 120.00280 * 179.72696 * 7 6 5 10 10 C 1.40485 * 120.00429 * 179.97438 * 9 7 6 11 11 C 1.40677 * 126.08655 * 0.02673 * 10 9 7 12 12 N 1.30901 * 108.38561 * 179.71873 * 11 10 9 13 13 N 1.40065 * 108.41652 * 0.40230 * 12 11 10 14 14 C 1.37312 * 126.07092 * 179.85595 * 13 12 11 15 15 H 1.08002 * 120.00634 * 179.69231 * 14 13 12 16 16 C 1.38992 * 119.99460 * 359.41109 * 14 13 12 17 17 N 1.31294 * 120.00157 * 0.27649 * 16 14 13 18 18 Si 1.86803 * 119.99838 * 180.27795 * 16 14 13 19 19 H 1.48498 * 109.47174 * 90.00076 * 18 16 14 20 20 H 1.48501 * 109.47062 * 210.00027 * 18 16 14 21 21 H 1.48504 * 109.46913 * 329.99826 * 18 16 14 22 22 C 1.35709 * 126.09085 * 179.97438 * 10 9 7 23 23 N 1.31495 * 119.54576 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.47337 * 269.97890 * 1 2 3 25 25 H 1.09007 * 109.47502 * 29.98036 * 1 2 3 26 26 H 1.09008 * 109.47340 * 149.97670 * 1 2 3 27 27 H 1.08003 * 120.32303 * 359.97230 * 3 2 1 28 28 H 1.08001 * 120.76210 * 179.97438 * 4 3 2 29 29 H 1.07994 * 120.47177 * 180.26402 * 5 4 3 30 30 H 0.97010 * 119.99512 * 359.97438 * 9 7 6 31 31 H 1.08000 * 125.80703 * 359.96870 * 11 10 9 32 32 H 0.97005 * 119.99961 * 179.97438 * 17 16 14 33 33 H 1.08003 * 126.24468 * 0.02886 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2057 0.0000 4 6 3.5763 1.2010 0.0005 5 6 4.2335 -0.0195 0.0064 6 6 3.4821 -1.1924 0.0005 7 6 4.1692 -2.5047 0.0012 8 8 5.3836 -2.5550 0.0016 9 7 3.4477 -3.6432 0.0011 10 6 4.0993 -4.8878 0.0011 11 6 5.4907 -5.0946 0.0017 12 7 5.7165 -6.3840 0.0077 13 7 4.4838 -7.0491 0.0017 14 6 4.2993 -8.4097 0.0023 15 1 3.2999 -8.8193 0.0024 16 6 5.3988 -9.2601 -0.0030 17 7 6.6137 -8.7623 -0.0031 18 14 5.1478 -11.1111 -0.0100 19 1 5.0789 -11.5960 -1.4119 20 1 6.2841 -11.7673 0.6855 21 1 3.8810 -11.4416 0.6910 22 6 3.4984 -6.1046 0.0015 23 7 2.1554 -1.1440 -0.0005 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6483 2.1398 -0.0005 28 1 4.1318 2.1272 0.0001 29 1 5.3126 -0.0605 0.0113 30 1 2.4784 -3.6031 0.0010 31 1 6.2445 -4.3212 0.0018 32 1 7.3810 -9.3557 -0.0065 33 1 2.4347 -6.2916 0.0015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747433831.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:25 Heat of formation + Delta-G solvation = 60.517936 kcal Electronic energy + Delta-G solvation = -19358.125497 eV Core-core repulsion = 16191.932685 eV Total energy + Delta-G solvation = -3166.192811 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.93393 -41.27438 -39.78172 -36.03555 -35.05530 -33.95138 -33.42571 -32.24350 -29.75045 -28.62103 -27.03077 -25.49958 -23.26180 -22.86042 -21.99360 -21.25116 -19.53017 -18.66484 -17.52462 -17.40822 -17.01818 -16.45399 -16.41648 -15.96435 -15.46384 -15.41092 -14.90414 -14.88422 -14.59286 -13.99400 -13.50412 -13.35303 -13.23461 -13.04527 -12.92005 -12.88178 -12.82027 -12.08252 -11.90536 -11.20708 -11.04382 -10.90842 -10.85699 -10.49906 -10.13822 -9.97818 -8.57222 -8.48562 -6.26253 -0.36569 0.25933 1.22813 1.39858 1.55648 1.58669 1.84908 1.98840 2.22510 2.42526 2.79436 2.88923 3.07778 3.15417 3.76660 3.90963 4.04058 4.11928 4.40137 4.48141 4.55746 4.64986 4.80323 4.87541 4.97308 4.99981 5.15045 5.18831 5.25075 5.26540 5.39932 5.69265 5.92979 6.25692 6.56377 6.69525 6.87024 7.25417 7.42627 7.63342 8.50954 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.045141 B = 0.003549 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.132833 B = 7888.187051 C = 8493.165557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.111 3.889 3 C -0.138 4.138 4 C -0.071 4.071 5 C -0.131 4.131 6 C 0.068 3.932 7 C 0.547 3.453 8 O -0.568 6.568 9 N -0.596 5.596 10 C -0.052 4.052 11 C -0.056 4.056 12 N -0.307 5.307 13 N -0.164 5.164 14 C -0.355 4.355 15 H 0.142 0.858 16 C -0.007 4.007 17 N -0.823 5.823 18 Si 1.022 2.978 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.244 1.244 22 C -0.079 4.079 23 N -0.483 5.483 24 H 0.090 0.910 25 H 0.105 0.895 26 H 0.071 0.929 27 H 0.183 0.817 28 H 0.179 0.821 29 H 0.141 0.859 30 H 0.421 0.579 31 H 0.170 0.830 32 H 0.277 0.723 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.630 17.581 0.020 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.030 4.030 3 C -0.157 4.157 4 C -0.096 4.096 5 C -0.152 4.152 6 C -0.069 4.069 7 C 0.334 3.666 8 O -0.447 6.447 9 N -0.239 5.239 10 C -0.159 4.159 11 C -0.231 4.231 12 N -0.139 5.139 13 N 0.067 4.933 14 C -0.486 4.486 15 H 0.160 0.840 16 C -0.219 4.219 17 N -0.451 5.451 18 Si 0.841 3.159 19 H -0.188 1.188 20 H -0.201 1.201 21 H -0.167 1.167 22 C -0.229 4.229 23 N -0.197 5.197 24 H 0.108 0.892 25 H 0.124 0.876 26 H 0.090 0.910 27 H 0.200 0.800 28 H 0.197 0.803 29 H 0.158 0.842 30 H 0.259 0.741 31 H 0.186 0.814 32 H 0.087 0.913 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -12.110 15.765 0.027 19.879 hybrid contribution -0.004 0.511 -0.009 0.511 sum -12.114 16.275 0.018 20.289 Atomic orbital electron populations 1.20846 0.85954 1.04775 1.04263 1.22032 0.98795 0.87862 0.94279 1.22667 0.94838 1.00329 0.97900 1.22039 0.95087 0.98058 0.94465 1.22236 1.02287 0.92460 0.98265 1.20715 0.90425 0.92734 1.02981 1.18420 0.86393 0.84007 0.77783 1.90644 1.14701 1.87050 1.52300 1.42284 1.10295 1.02151 1.69184 1.17412 0.91494 0.85073 1.21890 1.24172 0.95358 0.94443 1.09158 1.78140 1.04077 1.04167 1.27546 1.44863 1.02728 1.05679 1.40008 1.20681 0.97005 0.76877 1.53997 0.84045 1.26934 0.93748 1.07175 0.94003 1.70402 0.99338 1.38384 1.36963 0.84550 0.79351 0.72727 0.79285 1.18818 1.20096 1.16678 1.21955 0.95736 0.87176 1.18076 1.67325 1.07957 1.32182 1.12211 0.89180 0.87606 0.91049 0.79958 0.80330 0.84161 0.74130 0.81353 0.91276 0.79568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 10.17 71.24 0.72 -0.40 16 2 C 0.11 2.07 6.78 42.69 0.29 2.36 16 3 C -0.14 -1.82 9.75 22.44 0.22 -1.60 16 4 C -0.07 -1.11 10.17 22.45 0.23 -0.89 16 5 C -0.13 -3.32 9.63 22.62 0.22 -3.10 16 6 C 0.07 2.14 6.75 41.89 0.28 2.42 16 7 C 0.55 22.26 7.78 86.87 0.68 22.94 16 8 O -0.57 -26.90 13.47 -3.87 -0.05 -26.95 16 9 N -0.60 -24.39 5.45 -306.28 -1.67 -26.06 16 10 C -0.05 -2.62 6.90 37.76 0.26 -2.36 16 11 C -0.06 -3.23 10.85 85.43 0.93 -2.31 16 12 N -0.31 -19.20 10.39 -56.45 -0.59 -19.79 16 13 N -0.16 -9.47 3.74 -189.99 -0.71 -10.18 16 14 C -0.35 -19.26 10.25 84.02 0.86 -18.39 16 15 H 0.14 6.65 7.83 -2.91 -0.02 6.62 16 16 C -0.01 -0.36 5.50 84.95 0.47 0.10 16 17 N -0.82 -48.35 11.81 21.66 0.26 -48.09 16 18 Si 1.02 39.15 29.55 68.60 2.03 41.18 16 19 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 20 H -0.28 -10.44 7.11 99.48 0.71 -9.73 16 21 H -0.24 -8.46 7.11 99.48 0.71 -7.75 16 22 C -0.08 -3.90 11.49 83.38 0.96 -2.94 16 23 N -0.48 -13.05 9.45 -173.10 -1.64 -14.68 16 24 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.11 0.54 8.08 -2.38 -0.02 0.52 16 26 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 28 H 0.18 1.39 8.06 -2.91 -0.02 1.36 16 29 H 0.14 3.67 7.64 -2.91 -0.02 3.65 16 30 H 0.42 14.49 8.15 -92.70 -0.76 13.74 16 31 H 0.17 9.70 5.92 -2.91 -0.02 9.69 16 32 H 0.28 14.93 8.31 -92.70 -0.77 14.16 16 33 H 0.19 7.38 8.06 -2.91 -0.02 7.36 16 Total: -1.00 -79.77 297.58 4.14 -75.63 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: 0.40 Total: 33.12 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 6.11 Total: -4.17 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -4.35 Total: -118.80 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.05 Total: -26.95 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -79.77 4.14 -75.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747433831.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.143 kcal (2) G-P(sol) polarization free energy of solvation -79.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds