Wall clock time and date at job start Mon Mar 30 2020 01:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99896 * 2 1 4 4 C 1.52999 * 109.47041 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47116 * 180.02562 * 4 3 2 6 6 C 1.37307 * 125.83018 * 265.02573 * 5 4 3 7 7 N 1.29413 * 108.83725 * 179.73780 * 6 5 4 8 8 N 1.40174 * 108.13196 * 359.97438 * 7 6 5 9 9 C 1.46495 * 126.35166 * 179.97438 * 8 7 6 10 10 N 1.46510 * 109.46808 * 90.02876 * 9 8 7 11 11 C 1.46503 * 119.99783 * 89.99900 * 10 9 8 12 12 C 1.36932 * 119.99874 * 269.99647 * 10 9 8 13 13 H 1.07994 * 120.00353 * 22.01834 * 12 10 9 14 14 C 1.38816 * 119.99832 * 202.01286 * 12 10 9 15 15 N 1.31611 * 120.00206 * 12.48951 * 14 12 10 16 16 Si 1.86796 * 119.99730 * 192.49021 * 14 12 10 17 17 H 1.48501 * 109.47456 * 90.00148 * 16 14 12 18 18 H 1.48501 * 109.47169 * 209.99910 * 16 14 12 19 19 H 1.48501 * 109.47667 * 330.00124 * 16 14 12 20 20 C 1.34809 * 125.82547 * 84.72117 * 5 4 3 21 21 S 1.71204 * 126.30457 * 0.25859 * 20 5 4 22 22 H 1.09005 * 109.47080 * 299.99500 * 1 2 3 23 23 H 1.09001 * 109.47345 * 59.99544 * 1 2 3 24 24 H 1.09003 * 109.47153 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46685 * 60.00671 * 3 2 1 26 26 H 1.08996 * 109.47339 * 300.00168 * 3 2 1 27 27 H 1.08998 * 109.46781 * 60.00315 * 4 3 2 28 28 H 1.08996 * 109.47262 * 300.00303 * 4 3 2 29 29 H 1.08013 * 125.58195 * 359.72025 * 6 5 4 30 30 H 1.08998 * 109.47411 * 210.02343 * 9 8 7 31 31 H 1.09002 * 109.47734 * 330.03397 * 9 8 7 32 32 H 1.09003 * 109.47000 * 94.31503 * 11 10 9 33 33 H 1.08996 * 109.46924 * 214.31515 * 11 10 9 34 34 H 1.08991 * 109.47046 * 334.31465 * 11 10 9 35 35 H 0.97003 * 120.00163 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5231 0.0013 6 6 4.5469 3.2184 -1.1074 7 7 5.0151 4.3645 -0.7306 8 7 4.9107 4.4408 0.6652 9 6 5.3244 5.5664 1.5066 10 7 4.2036 6.4969 1.6632 11 6 3.2628 6.3301 2.7738 12 6 4.0354 7.5224 0.7715 13 1 4.4737 7.4588 -0.2135 14 6 3.3015 8.6436 1.1336 15 7 2.9770 8.8389 2.3940 16 14 2.7745 9.8752 -0.1682 17 1 1.4467 9.4870 -0.7083 18 1 2.6861 11.2283 0.4374 19 1 3.7714 9.8897 -1.2687 20 6 4.3599 3.2845 1.0900 21 16 4.0142 2.8626 2.7128 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6886 1.8463 0.8901 26 1 1.6886 1.8464 -0.8899 27 1 3.8574 0.6437 -0.8891 28 1 3.8567 0.6439 0.8908 29 1 4.4923 2.8663 -2.1271 30 1 5.6283 5.1958 2.4856 31 1 6.1621 6.0824 1.0373 32 1 3.5740 6.9556 3.6105 33 1 2.2643 6.6249 2.4514 34 1 3.2504 5.2858 3.0857 35 1 2.4644 9.6226 2.6471 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748535257.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:56 Heat of formation + Delta-G solvation = 76.664934 kcal Electronic energy + Delta-G solvation = -19128.901578 eV Core-core repulsion = 16098.852904 eV Total energy + Delta-G solvation = -3030.048674 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.105 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.14817 -38.15054 -36.30557 -34.75623 -32.45602 -30.86067 -29.95486 -26.95489 -26.20439 -25.90436 -23.67007 -22.90742 -22.01481 -21.07801 -18.02527 -17.12960 -16.51119 -16.34928 -16.10884 -15.74987 -15.37845 -15.11824 -14.68585 -14.58515 -13.72459 -13.56658 -13.38625 -12.42166 -12.07457 -11.92029 -11.61465 -11.54477 -11.30789 -11.11436 -10.95491 -10.74517 -10.61555 -10.50544 -10.26395 -10.15794 -9.88259 -9.83597 -8.88091 -7.37387 -7.09949 -7.00683 -6.04802 -3.53416 1.63349 1.86391 2.09022 2.77016 2.98142 3.25377 3.28917 3.30796 3.71640 4.24423 4.43060 4.69906 4.76746 4.96002 5.05071 5.16323 5.19058 5.22627 5.26934 5.36097 5.47924 5.59425 5.77943 6.05799 6.15429 6.59316 6.86532 6.93092 7.00846 7.36170 7.57507 7.63722 7.71081 8.03185 8.86807 9.44565 9.88939 10.95424 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019930 B = 0.005344 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.601900 B = 5237.958212 C = 5446.162095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.387 6.387 3 C 0.047 3.953 4 C 0.123 3.877 5 N -0.501 5.501 6 C 0.216 3.784 7 N -0.272 5.272 8 N -0.350 5.350 9 C 0.340 3.660 10 N -0.538 5.538 11 C 0.129 3.871 12 C -0.286 4.286 13 H 0.080 0.920 14 C 0.019 3.981 15 N -0.884 5.884 16 Si 0.915 3.085 17 H -0.284 1.284 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.457 3.543 21 S -0.631 6.631 22 H 0.046 0.954 23 H 0.041 0.959 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.229 0.771 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.047 0.953 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.587 -13.870 -8.449 16.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.306 6.306 3 C -0.031 4.031 4 C 0.000 4.000 5 N -0.204 5.204 6 C -0.085 4.085 7 N -0.092 5.092 8 N -0.152 5.152 9 C 0.132 3.868 10 N -0.252 5.252 11 C -0.015 4.015 12 C -0.416 4.416 13 H 0.098 0.902 14 C -0.183 4.183 15 N -0.524 5.524 16 Si 0.743 3.257 17 H -0.211 1.211 18 H -0.212 1.212 19 H -0.199 1.199 20 C 0.094 3.906 21 S -0.504 6.504 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.106 0.894 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.121 0.879 28 H 0.134 0.866 29 H 0.245 0.755 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.336 -12.959 -7.569 15.011 hybrid contribution -0.944 0.530 -1.474 1.829 sum -1.280 -12.429 -9.044 15.424 Atomic orbital electron populations 1.22761 0.80244 1.02807 1.00424 1.87757 1.20312 1.26883 1.95600 1.22753 0.92878 0.85473 1.01996 1.21498 0.92294 0.79733 1.06480 1.46391 1.51420 1.17331 1.05306 1.26300 0.98092 0.89240 0.94819 1.77237 1.19772 1.16184 0.95993 1.55045 1.44792 1.13594 1.01774 1.21809 0.90062 0.81968 0.92998 1.44851 1.26220 1.25352 1.28734 1.21431 0.92774 0.97819 0.89497 1.19415 1.32801 0.94890 0.94479 0.90232 1.25142 0.99516 0.97416 0.96215 1.70133 1.39271 1.28249 1.14775 0.86109 0.78881 0.80021 0.80653 1.21093 1.21200 1.19933 1.24346 0.87436 0.85227 0.93619 1.93139 1.75583 1.84371 0.97318 0.93557 0.94054 0.89376 0.91168 0.93031 0.87854 0.86649 0.75526 0.87743 0.88642 0.93948 0.93897 0.93472 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -4.47 10.70 -35.23 -0.38 -4.85 16 3 C 0.05 0.56 6.26 37.16 0.23 0.79 16 4 C 0.12 1.37 6.19 -4.04 -0.02 1.35 16 5 N -0.50 -7.08 2.74 -119.23 -0.33 -7.41 16 6 C 0.22 2.70 12.65 -89.16 -1.13 1.57 16 7 N -0.27 -4.63 12.53 29.86 0.37 -4.26 16 8 N -0.35 -6.80 3.86 -65.18 -0.25 -7.05 16 9 C 0.34 7.12 6.75 -63.75 -0.43 6.69 16 10 N -0.54 -13.34 3.16 -184.86 -0.59 -13.93 16 11 C 0.13 3.27 8.97 59.85 0.54 3.81 16 12 C -0.29 -7.58 9.67 -15.06 -0.15 -7.72 16 13 H 0.08 2.09 7.86 -52.49 -0.41 1.68 16 14 C 0.02 0.52 5.11 -17.43 -0.09 0.43 16 15 N -0.88 -24.75 10.63 55.49 0.59 -24.16 16 16 Si 0.92 21.01 29.57 -169.99 -5.03 15.98 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 C 0.46 8.54 7.86 -86.74 -0.68 7.86 16 21 S -0.63 -13.48 27.84 -107.50 -2.99 -16.47 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.10 0.78 8.13 -51.93 -0.42 0.35 16 28 H 0.12 1.45 7.81 -51.93 -0.41 1.04 16 29 H 0.23 1.49 8.06 -52.48 -0.42 1.07 16 30 H 0.10 2.15 7.62 -51.93 -0.40 1.75 16 31 H 0.10 1.90 8.04 -51.93 -0.42 1.48 16 32 H 0.04 1.13 7.42 -51.93 -0.39 0.74 16 33 H 0.04 1.17 7.20 -51.93 -0.37 0.80 16 34 H 0.05 1.15 6.03 -51.93 -0.31 0.84 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 314.01 15.07 4.73 4.73 Total: -1.00 -32.74 314.01 -9.28 -42.02 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -4.80 Total: -0.79 kcal Atomic # 6 Polarization: 16.80 SS G_CDS: -0.62 Total: 16.19 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.20 Total: -56.80 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.38 Total: -4.85 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Atomic # 16 Polarization: -13.48 SS G_CDS: -2.99 Total: -16.47 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.74 -9.28 -42.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748535257.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.682 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds