Wall clock time and date at job start Mon Mar 30 2020 01:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99896 * 2 1 4 4 C 1.52999 * 109.47041 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47116 * 180.02562 * 4 3 2 6 6 C 1.37307 * 125.83018 * 265.02573 * 5 4 3 7 7 N 1.29413 * 108.83725 * 179.73780 * 6 5 4 8 8 N 1.40174 * 108.13196 * 359.97438 * 7 6 5 9 9 C 1.46495 * 126.35166 * 179.97438 * 8 7 6 10 10 N 1.46510 * 109.46808 * 90.02876 * 9 8 7 11 11 C 1.46503 * 119.99783 * 89.99900 * 10 9 8 12 12 C 1.36932 * 119.99874 * 269.99647 * 10 9 8 13 13 H 1.07994 * 120.00353 * 22.01834 * 12 10 9 14 14 C 1.38816 * 119.99832 * 202.01286 * 12 10 9 15 15 N 1.31611 * 120.00206 * 12.48951 * 14 12 10 16 16 Si 1.86796 * 119.99730 * 192.49021 * 14 12 10 17 17 H 1.48501 * 109.47456 * 90.00148 * 16 14 12 18 18 H 1.48501 * 109.47169 * 209.99910 * 16 14 12 19 19 H 1.48501 * 109.47667 * 330.00124 * 16 14 12 20 20 C 1.34809 * 125.82547 * 84.72117 * 5 4 3 21 21 S 1.71204 * 126.30457 * 0.25859 * 20 5 4 22 22 H 1.09005 * 109.47080 * 299.99500 * 1 2 3 23 23 H 1.09001 * 109.47345 * 59.99544 * 1 2 3 24 24 H 1.09003 * 109.47153 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46685 * 60.00671 * 3 2 1 26 26 H 1.08996 * 109.47339 * 300.00168 * 3 2 1 27 27 H 1.08998 * 109.46781 * 60.00315 * 4 3 2 28 28 H 1.08996 * 109.47262 * 300.00303 * 4 3 2 29 29 H 1.08013 * 125.58195 * 359.72025 * 6 5 4 30 30 H 1.08998 * 109.47411 * 210.02343 * 9 8 7 31 31 H 1.09002 * 109.47734 * 330.03397 * 9 8 7 32 32 H 1.09003 * 109.47000 * 94.31503 * 11 10 9 33 33 H 1.08996 * 109.46924 * 214.31515 * 11 10 9 34 34 H 1.08991 * 109.47046 * 334.31465 * 11 10 9 35 35 H 0.97003 * 120.00163 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5231 0.0013 6 6 4.5469 3.2184 -1.1074 7 7 5.0151 4.3645 -0.7306 8 7 4.9107 4.4408 0.6652 9 6 5.3244 5.5664 1.5066 10 7 4.2036 6.4969 1.6632 11 6 3.2628 6.3301 2.7738 12 6 4.0354 7.5224 0.7715 13 1 4.4737 7.4588 -0.2135 14 6 3.3015 8.6436 1.1336 15 7 2.9770 8.8389 2.3940 16 14 2.7745 9.8752 -0.1682 17 1 1.4467 9.4870 -0.7083 18 1 2.6861 11.2283 0.4374 19 1 3.7714 9.8897 -1.2687 20 6 4.3599 3.2845 1.0900 21 16 4.0142 2.8626 2.7128 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6886 1.8463 0.8901 26 1 1.6886 1.8464 -0.8899 27 1 3.8574 0.6437 -0.8891 28 1 3.8567 0.6439 0.8908 29 1 4.4923 2.8663 -2.1271 30 1 5.6283 5.1958 2.4856 31 1 6.1621 6.0824 1.0373 32 1 3.5740 6.9556 3.6105 33 1 2.2643 6.6249 2.4514 34 1 3.2504 5.2858 3.0857 35 1 2.4644 9.6226 2.6471 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748535257.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:56 Heat of formation + Delta-G solvation = 56.808666 kcal Electronic energy + Delta-G solvation = -19129.762610 eV Core-core repulsion = 16098.852904 eV Total energy + Delta-G solvation = -3030.909706 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.105 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.53756 -39.06224 -38.01154 -36.15901 -34.07600 -32.58580 -31.08490 -28.47576 -27.92039 -27.13163 -24.92991 -24.33943 -23.36742 -22.70780 -19.44659 -18.82195 -17.84178 -17.56241 -17.36558 -16.94371 -16.89595 -16.38076 -16.00877 -15.81709 -15.44797 -15.13516 -14.44415 -14.04208 -13.50468 -13.34596 -13.06092 -12.93631 -12.75840 -12.53472 -12.47462 -12.35182 -12.25593 -12.22107 -12.02851 -11.77544 -11.32593 -10.86586 -10.75250 -9.31121 -8.79479 -8.70139 -8.00663 -5.57107 0.12364 0.42486 0.94347 1.30675 1.42527 1.43998 1.53135 1.72136 2.38148 2.81831 3.18306 3.27312 3.42926 3.68751 3.83517 3.95304 4.09351 4.24974 4.37658 4.43778 4.48498 4.51518 4.68152 4.82219 4.83633 4.90299 5.15753 5.38773 5.52760 5.55121 5.59508 6.02959 6.05852 6.34643 6.89038 7.52496 7.96068 8.99691 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019930 B = 0.005344 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.601900 B = 5237.958212 C = 5446.162095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.053 3.947 4 C 0.123 3.877 5 N -0.489 5.489 6 C 0.257 3.743 7 N -0.308 5.308 8 N -0.365 5.365 9 C 0.362 3.638 10 N -0.568 5.568 11 C 0.160 3.840 12 C -0.289 4.289 13 H 0.080 0.920 14 C -0.035 4.035 15 N -0.924 5.924 16 Si 0.979 3.021 17 H -0.287 1.287 18 H -0.289 1.289 19 H -0.262 1.262 20 C 0.461 3.539 21 S -0.690 6.690 22 H 0.035 0.965 23 H 0.055 0.945 24 H 0.109 0.891 25 H 0.031 0.969 26 H 0.069 0.931 27 H 0.159 0.841 28 H 0.100 0.900 29 H 0.299 0.701 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.017 0.983 33 H 0.012 0.988 34 H 0.051 0.949 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.218 -15.875 -12.044 19.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C -0.025 4.025 4 C 0.002 3.998 5 N -0.190 5.190 6 C -0.041 4.041 7 N -0.127 5.127 8 N -0.163 5.163 9 C 0.154 3.846 10 N -0.285 5.285 11 C 0.015 3.985 12 C -0.419 4.419 13 H 0.097 0.903 14 C -0.233 4.233 15 N -0.567 5.567 16 Si 0.805 3.195 17 H -0.213 1.213 18 H -0.215 1.215 19 H -0.186 1.186 20 C 0.094 3.906 21 S -0.564 6.564 22 H 0.054 0.946 23 H 0.073 0.927 24 H 0.127 0.873 25 H 0.049 0.951 26 H 0.087 0.913 27 H 0.176 0.824 28 H 0.118 0.882 29 H 0.314 0.686 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.035 0.965 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.058 -15.044 -11.233 18.775 hybrid contribution -0.997 0.797 -0.545 1.388 sum -0.940 -14.248 -11.778 18.510 Atomic orbital electron populations 1.22962 0.78983 1.04317 1.00609 1.87738 1.21690 1.26385 1.95602 1.22616 0.93293 0.85665 1.00947 1.21819 0.91751 0.77768 1.08462 1.46453 1.50201 1.17977 1.04365 1.27711 0.93173 0.86823 0.96412 1.77257 1.23271 1.19135 0.93030 1.53361 1.45609 1.13604 1.03700 1.21560 0.89274 0.80792 0.92976 1.44783 1.27474 1.27035 1.29217 1.20961 0.91395 0.97049 0.89085 1.19569 1.32588 0.95249 0.94475 0.90254 1.25921 1.00196 0.99218 0.97927 1.70278 1.40993 1.28875 1.16509 0.85120 0.78308 0.77575 0.78481 1.21338 1.21501 1.18643 1.23699 0.87622 0.85547 0.93742 1.93266 1.77619 1.85125 1.00380 0.94598 0.92660 0.87292 0.95066 0.91288 0.82354 0.88162 0.68611 0.88079 0.87620 0.96456 0.96904 0.93083 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.40 -8.08 10.70 -148.98 -1.59 -9.67 16 3 C 0.05 1.12 6.26 71.98 0.45 1.57 16 4 C 0.12 2.26 6.19 86.38 0.53 2.79 16 5 N -0.49 -12.00 2.74 -531.12 -1.45 -13.46 16 6 C 0.26 5.01 12.65 179.84 2.27 7.28 16 7 N -0.31 -9.41 12.53 -59.43 -0.74 -10.15 16 8 N -0.36 -13.65 3.86 -360.12 -1.39 -15.04 16 9 C 0.36 15.18 6.75 170.96 1.15 16.34 16 10 N -0.57 -28.76 3.16 -738.76 -2.34 -31.10 16 11 C 0.16 8.51 8.97 127.77 1.15 9.66 16 12 C -0.29 -15.50 9.67 84.04 0.81 -14.68 16 13 H 0.08 4.14 7.86 -2.91 -0.02 4.12 16 14 C -0.03 -1.91 5.11 84.86 0.43 -1.47 16 15 N -0.92 -53.79 10.63 21.65 0.23 -53.56 16 16 Si 0.98 43.70 29.57 68.60 2.03 45.73 16 17 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 19 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 20 C 0.46 16.58 7.86 178.99 1.41 17.99 16 21 S -0.69 -29.89 27.84 -56.49 -1.57 -31.46 16 22 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 23 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.16 1.29 8.13 -2.39 -0.02 1.28 16 28 H 0.10 2.28 7.81 -2.39 -0.02 2.26 16 29 H 0.30 1.31 8.06 -2.90 -0.02 1.28 16 30 H 0.10 4.25 7.62 -2.39 -0.02 4.23 16 31 H 0.11 4.17 8.04 -2.39 -0.02 4.15 16 32 H 0.02 0.97 7.42 -2.39 -0.02 0.95 16 33 H 0.01 0.71 7.20 -2.39 -0.02 0.69 16 34 H 0.05 2.61 6.03 -2.39 -0.01 2.59 16 35 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -76.04 314.01 3.71 -72.34 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: 1.08 Total: 5.23 kcal Atomic # 6 Polarization: 31.69 SS G_CDS: 9.46 Total: 41.15 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -5.70 Total: -123.32 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -1.59 Total: -9.67 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -29.89 SS G_CDS: -1.57 Total: -31.46 kcal Total: -76.04 3.71 -72.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748535257.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.145 kcal (2) G-P(sol) polarization free energy of solvation -76.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds