Wall clock time and date at job start Mon Mar 30 2020 01:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36889 * 120.00161 * 2 1 4 4 H 1.08005 * 120.00154 * 201.54031 * 3 2 1 5 5 C 1.39037 * 120.00015 * 21.53407 * 3 2 1 6 6 N 1.31371 * 119.99924 * 13.49588 * 5 3 2 7 7 Si 1.86800 * 119.99987 * 193.49677 * 5 3 2 8 8 H 1.48500 * 109.47017 * 90.00191 * 7 5 3 9 9 H 1.48500 * 109.46979 * 210.00190 * 7 5 3 10 10 H 1.48502 * 109.46986 * 329.99794 * 7 5 3 11 11 C 1.34773 * 120.00118 * 179.97438 * 2 1 3 12 12 O 1.21615 * 120.00322 * 184.65933 * 11 2 1 13 13 C 1.47552 * 120.00104 * 4.65868 * 11 2 1 14 14 C 1.40293 * 120.49892 * 319.16279 * 13 11 2 15 15 C 1.38012 * 118.34884 * 179.97438 * 14 13 11 16 16 C 1.39180 * 119.26414 * 359.97438 * 15 14 13 17 17 N 1.39489 * 119.52476 * 180.02562 * 16 15 14 18 18 C 1.35912 * 126.10658 * 179.97438 * 17 16 15 19 19 C 1.35251 * 107.60369 * 179.74968 * 18 17 16 20 20 C 1.39993 * 107.97212 * 0.39183 * 19 18 17 21 21 N 1.30797 * 108.37931 * 359.59851 * 20 19 18 22 22 N 1.32454 * 120.95184 * 0.27183 * 16 15 14 23 23 C 1.31609 * 121.80810 * 359.44173 * 22 16 15 24 24 H 1.08999 * 109.47092 * 264.73988 * 1 2 3 25 25 H 1.09000 * 109.47228 * 24.73506 * 1 2 3 26 26 H 1.09002 * 109.47143 * 144.73345 * 1 2 3 27 27 H 0.96997 * 119.99841 * 179.97438 * 6 5 3 28 28 H 1.07997 * 120.83095 * 359.95362 * 14 13 11 29 29 H 1.08001 * 120.36913 * 179.97438 * 15 14 13 30 30 H 1.07997 * 126.19900 * 0.02950 * 18 17 16 31 31 H 1.07997 * 126.01164 * 180.23392 * 19 18 17 32 32 H 1.07997 * 125.81311 * 179.86406 * 20 19 18 33 33 H 1.08000 * 119.69117 * 180.28351 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1855 0.0000 4 1 3.1729 1.2181 -0.3434 5 6 1.5271 2.3476 0.4420 6 7 0.3928 2.2754 1.1008 7 14 2.3038 4.0114 0.0990 8 1 1.8037 4.5332 -1.1983 9 1 1.9448 4.9586 1.1849 10 1 3.7803 3.8653 0.0377 11 6 2.1389 -1.1672 0.0005 12 8 3.3520 -1.1689 0.0861 13 6 1.4048 -2.4430 -0.1027 14 6 0.2042 -2.6324 0.5980 15 6 -0.4459 -3.8429 0.4690 16 6 0.1053 -4.8278 -0.3454 17 7 -0.5475 -6.0531 -0.4802 18 6 -0.1317 -7.1032 -1.2362 19 6 -1.0381 -8.0965 -1.0905 20 6 -2.0428 -7.6413 -0.2283 21 7 -1.7488 -6.4211 0.1398 22 7 1.2434 -4.6202 -0.9905 23 6 1.8936 -3.4795 -0.9004 24 1 -0.3633 -0.0942 1.0233 25 1 -0.3634 0.9334 -0.4300 26 1 -0.3633 -0.8391 -0.5934 27 1 -0.0412 3.0861 1.4094 28 1 -0.2010 -1.8505 1.2232 29 1 -1.3721 -4.0240 0.9941 30 1 0.7629 -7.1398 -1.8401 31 1 -0.9957 -9.0686 -1.5590 32 1 -2.9105 -8.2036 0.0835 33 1 2.8166 -3.3454 -1.4450 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748545188.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:15 Heat of formation + Delta-G solvation = 90.724545 kcal Electronic energy + Delta-G solvation = -19753.667251 eV Core-core repulsion = 16588.784297 eV Total energy + Delta-G solvation = -3164.882954 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.58827 -41.42250 -39.82824 -36.82741 -34.86254 -34.01606 -33.32201 -31.41777 -30.58947 -28.38894 -26.95759 -25.20607 -24.93381 -22.40231 -21.82423 -21.30889 -19.48131 -19.09762 -18.24699 -17.38054 -17.02201 -16.61218 -16.36017 -15.97151 -15.69881 -15.35693 -15.15182 -14.62550 -14.57559 -14.33943 -13.86345 -13.67828 -13.47111 -13.25706 -13.21509 -12.60036 -12.50173 -12.14456 -11.88851 -11.46721 -11.11320 -11.04913 -10.98649 -10.50591 -10.21246 -9.82387 -9.33010 -8.43775 -6.04195 -0.63947 0.01119 0.92144 1.04760 1.38732 1.42223 1.54243 1.84822 1.95849 2.22893 2.62448 2.89540 3.05305 3.14686 3.42609 3.73679 3.74929 3.92231 4.09861 4.10345 4.43996 4.51203 4.60306 4.68506 4.80695 4.89985 4.96975 5.06167 5.21118 5.29755 5.38839 5.62384 5.97156 5.99976 6.29084 6.37746 6.75642 7.05099 7.30879 7.88107 8.58925 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.047155 B = 0.003896 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.649226 B = 7184.509243 C = 7634.428548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.440 5.440 3 C -0.347 4.347 4 H 0.079 0.921 5 C 0.002 3.998 6 N -0.886 5.886 7 Si 0.994 3.006 8 H -0.264 1.264 9 H -0.272 1.272 10 H -0.274 1.274 11 C 0.472 3.528 12 O -0.628 6.628 13 C -0.176 4.176 14 C -0.025 4.025 15 C -0.164 4.164 16 C 0.365 3.635 17 N -0.343 5.343 18 C 0.057 3.943 19 C -0.254 4.254 20 C 0.070 3.930 21 N -0.320 5.320 22 N -0.511 5.511 23 C 0.175 3.825 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.278 0.722 28 H 0.160 0.840 29 H 0.165 0.835 30 H 0.191 0.809 31 H 0.190 0.810 32 H 0.232 0.768 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.211 -15.476 -3.665 17.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.155 5.155 3 C -0.475 4.475 4 H 0.097 0.903 5 C -0.201 4.201 6 N -0.524 5.524 7 Si 0.817 3.183 8 H -0.189 1.189 9 H -0.197 1.197 10 H -0.199 1.199 11 C 0.262 3.738 12 O -0.517 6.517 13 C -0.182 4.182 14 C -0.052 4.052 15 C -0.186 4.186 16 C 0.137 3.863 17 N -0.121 5.121 18 C -0.082 4.082 19 C -0.282 4.282 20 C -0.119 4.119 21 N -0.138 5.138 22 N -0.224 5.224 23 C 0.016 3.984 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.177 0.823 29 H 0.183 0.817 30 H 0.208 0.792 31 H 0.207 0.793 32 H 0.248 0.752 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -7.790 -14.904 -3.358 17.149 hybrid contribution 0.449 0.968 0.051 1.068 sum -7.341 -13.936 -3.307 16.095 Atomic orbital electron populations 1.21793 0.79324 1.01148 1.00653 1.43738 1.06908 1.04518 1.60383 1.19742 0.99199 0.85073 1.43446 0.90334 1.26149 0.96875 1.03000 0.94069 1.70026 1.18038 1.30941 1.33387 0.84920 0.78390 0.76444 0.78554 1.18865 1.19675 1.19906 1.18200 0.87080 0.83805 0.84711 1.90589 1.15392 1.87461 1.58272 1.20965 0.97794 0.96601 1.02824 1.22087 0.91359 0.96901 0.94830 1.21581 1.03327 0.92183 1.01474 1.18050 0.89798 0.84616 0.93832 1.45846 1.18810 1.10093 1.37318 1.23424 1.01636 0.86958 0.96229 1.22105 0.96281 1.02485 1.07279 1.24941 1.00500 0.91422 0.94989 1.77456 0.97493 1.17678 1.21215 1.66921 1.07413 1.24014 1.24096 1.22621 0.97409 0.85001 0.93323 0.92586 0.91414 0.92406 0.91171 0.82289 0.81745 0.79157 0.79306 0.75196 0.80541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.90 7.22 127.77 0.92 5.83 16 2 N -0.44 -22.59 3.01 -662.51 -2.00 -24.58 16 3 C -0.35 -19.35 9.27 84.10 0.78 -18.57 16 4 H 0.08 4.66 7.44 -2.91 -0.02 4.64 16 5 C 0.00 0.12 5.04 84.95 0.43 0.55 16 6 N -0.89 -45.04 10.70 21.68 0.23 -44.80 16 7 Si 0.99 40.98 29.57 68.60 2.03 43.01 16 8 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 9 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 11 C 0.47 23.68 7.29 86.70 0.63 24.31 16 12 O -0.63 -36.17 16.66 -4.08 -0.07 -36.23 16 13 C -0.18 -6.95 5.18 -19.98 -0.10 -7.05 16 14 C -0.03 -0.86 7.72 22.72 0.18 -0.68 16 15 C -0.16 -4.95 9.68 22.44 0.22 -4.74 16 16 C 0.37 11.47 7.55 132.89 1.00 12.47 16 17 N -0.34 -9.50 3.80 -192.16 -0.73 -10.23 16 18 C 0.06 1.26 11.09 83.37 0.92 2.18 16 19 C -0.25 -4.05 10.80 22.01 0.24 -3.81 16 20 C 0.07 1.19 12.02 85.27 1.02 2.21 16 21 N -0.32 -8.09 11.81 -56.96 -0.67 -8.76 16 22 N -0.51 -16.70 9.82 -191.77 -1.88 -18.58 16 23 C 0.18 6.24 10.82 85.06 0.92 7.16 16 24 H 0.06 2.38 6.65 -2.39 -0.02 2.36 16 25 H 0.07 3.11 6.53 -2.39 -0.02 3.10 16 26 H 0.06 2.14 5.97 -2.39 -0.01 2.13 16 27 H 0.28 13.15 8.31 -92.71 -0.77 12.38 16 28 H 0.16 5.20 5.55 -2.91 -0.02 5.19 16 29 H 0.17 4.39 7.67 -2.91 -0.02 4.36 16 30 H 0.19 3.61 8.05 -2.91 -0.02 3.59 16 31 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 32 H 0.23 1.77 8.06 -2.91 -0.02 1.75 16 33 H 0.18 5.97 8.06 -2.91 -0.02 5.95 16 Total: -1.00 -69.00 290.70 5.22 -63.77 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 1.15 Total: 16.58 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: 7.16 Total: 19.85 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -5.05 Total: -106.97 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -0.07 Total: -36.23 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -69.00 5.22 -63.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748545188.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.498 kcal (2) G-P(sol) polarization free energy of solvation -68.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds