Wall clock time and date at job start Mon Mar 30 2020 01:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36802 * 119.99658 * 2 1 4 4 H 1.08001 * 119.99414 * 197.41415 * 3 2 1 5 5 C 1.39103 * 120.00343 * 17.41085 * 3 2 1 6 6 N 1.31325 * 119.99510 * 17.84695 * 5 3 2 7 7 Si 1.86797 * 120.00069 * 197.84493 * 5 3 2 8 8 H 1.48499 * 109.47361 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47176 * 119.99972 * 7 5 3 10 10 H 1.48499 * 109.46910 * 240.00010 * 7 5 3 11 11 C 1.34775 * 120.00607 * 179.97438 * 2 1 3 12 12 O 1.21555 * 120.00491 * 183.92879 * 11 2 1 13 13 C 1.48007 * 119.99578 * 3.92633 * 11 2 1 14 14 C 1.40046 * 120.89674 * 318.72089 * 13 11 2 15 15 C 1.38000 * 119.12407 * 179.97438 * 14 13 11 16 16 N 1.31875 * 120.98944 * 0.02562 * 15 14 13 17 17 C 1.32257 * 121.99270 * 359.97438 * 16 15 14 18 18 N 1.39847 * 119.62132 * 180.02562 * 17 16 15 19 19 C 1.37167 * 126.48692 * 4.71344 * 18 17 16 20 20 C 1.34619 * 106.82993 * 179.84503 * 19 18 17 21 21 N 1.34148 * 108.21669 * 0.41952 * 20 19 18 22 22 C 1.30489 * 109.37179 * 359.73591 * 21 20 19 23 23 C 1.38863 * 120.75357 * 0.02562 * 17 16 15 24 24 H 1.09000 * 109.47560 * 273.39009 * 1 2 3 25 25 H 1.09004 * 109.47146 * 33.39230 * 1 2 3 26 26 H 1.08997 * 109.47276 * 153.39023 * 1 2 3 27 27 H 0.97006 * 119.99432 * 180.02562 * 6 5 3 28 28 H 1.08001 * 120.43960 * 359.95777 * 14 13 11 29 29 H 1.08000 * 119.50348 * 180.02562 * 15 14 13 30 30 H 1.07998 * 126.58937 * 359.97438 * 19 18 17 31 31 H 1.08003 * 125.89862 * 180.15310 * 20 19 18 32 32 H 1.07996 * 125.72395 * 179.97438 * 22 21 20 33 33 H 1.08002 * 120.53079 * 180.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1489 1.1848 0.0000 4 1 3.1918 1.2062 -0.2799 5 6 1.5012 2.3619 0.3605 6 7 0.3697 2.3115 1.0252 7 14 2.2408 4.0139 -0.1009 8 1 3.5100 3.7987 -0.8413 9 1 1.2869 4.7609 -0.9596 10 1 2.5139 4.7956 1.1318 11 6 2.1389 -1.1671 0.0005 12 8 3.3524 -1.1683 0.0726 13 6 1.4016 -2.4475 -0.0867 14 6 0.2151 -2.6443 0.6308 15 6 -0.4430 -3.8524 0.5221 16 7 0.0295 -4.8165 -0.2436 17 6 1.1457 -4.6757 -0.9389 18 7 1.6015 -5.7307 -1.7357 19 6 0.9563 -6.9199 -1.9618 20 6 1.7419 -7.6393 -2.7849 21 7 2.8421 -6.9190 -3.0502 22 6 2.7704 -5.7742 -2.4280 23 6 1.8702 -3.4922 -0.8868 24 1 -0.3634 0.0608 1.0258 25 1 -0.3634 0.8580 -0.5656 26 1 -0.3634 -0.9188 -0.4603 27 1 -0.0822 3.1324 1.2762 28 1 -0.1796 -1.8611 1.2611 29 1 -1.3587 -4.0107 1.0724 30 1 0.0005 -7.2205 -1.5587 31 1 1.5260 -8.6277 -3.1628 32 1 3.5151 -4.9926 -2.4578 33 1 2.7810 -3.3809 -1.4565 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748545757.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:22 Heat of formation + Delta-G solvation = 94.268008 kcal Electronic energy + Delta-G solvation = -19901.945979 eV Core-core repulsion = 16737.216680 eV Total energy + Delta-G solvation = -3164.729298 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.31638 -40.20610 -38.29502 -35.02941 -34.20958 -32.66449 -31.69236 -30.11490 -29.23778 -26.69780 -25.55156 -23.99335 -23.69470 -21.49357 -20.90086 -19.89889 -18.20093 -17.25355 -16.57277 -15.97518 -15.78534 -15.64350 -15.13111 -14.44865 -14.22496 -14.17379 -13.91354 -13.67565 -13.51715 -13.42623 -12.72042 -12.33979 -11.86795 -11.56825 -11.40004 -11.08843 -10.72688 -10.50854 -10.48998 -10.20087 -9.86081 -9.64524 -9.29795 -8.79173 -8.70081 -8.42713 -8.04524 -6.65117 -4.09589 0.71726 1.02936 2.20111 2.43951 2.99118 3.07302 3.11545 3.18115 3.52112 3.85320 3.99151 4.24168 4.41769 4.61987 4.76792 4.85556 4.97972 5.09539 5.15886 5.38145 5.45492 5.55311 5.63554 5.80246 6.04692 6.18507 6.28307 6.44672 6.58038 6.64916 6.91799 7.12094 7.28808 7.74026 7.78863 7.96432 8.17166 8.87798 9.07949 9.65091 10.37585 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.035550 B = 0.004282 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.442323 B = 6536.724443 C = 7092.939829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.416 5.416 3 C -0.307 4.307 4 H 0.108 0.892 5 C 0.035 3.965 6 N -0.864 5.864 7 Si 0.930 3.070 8 H -0.265 1.265 9 H -0.277 1.277 10 H -0.278 1.278 11 C 0.458 3.542 12 O -0.582 6.582 13 C -0.017 4.017 14 C -0.161 4.161 15 C 0.124 3.876 16 N -0.502 5.502 17 C 0.330 3.670 18 N -0.405 5.405 19 C -0.027 4.027 20 C -0.037 4.037 21 N -0.484 5.484 22 C 0.196 3.804 23 C -0.141 4.141 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.273 0.727 28 H 0.154 0.846 29 H 0.168 0.832 30 H 0.180 0.820 31 H 0.174 0.826 32 H 0.212 0.788 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.196 -9.718 -2.423 11.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.131 5.131 3 C -0.435 4.435 4 H 0.126 0.874 5 C -0.171 4.171 6 N -0.501 5.501 7 Si 0.756 3.244 8 H -0.188 1.188 9 H -0.203 1.203 10 H -0.204 1.204 11 C 0.246 3.754 12 O -0.468 6.468 13 C -0.029 4.029 14 C -0.182 4.182 15 C -0.033 4.033 16 N -0.215 5.215 17 C 0.103 3.897 18 N -0.086 5.086 19 C -0.157 4.157 20 C -0.182 4.182 21 N -0.201 5.201 22 C -0.086 4.086 23 C -0.164 4.164 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.172 0.828 29 H 0.185 0.815 30 H 0.197 0.803 31 H 0.191 0.809 32 H 0.229 0.771 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.604 -10.522 -2.827 11.828 hybrid contribution -0.242 1.874 0.551 1.968 sum -4.846 -8.649 -2.276 10.171 Atomic orbital electron populations 1.21940 0.80827 0.99616 1.02220 1.43566 1.05903 1.04746 1.58875 1.19860 0.97626 0.82443 1.43527 0.87412 1.25423 0.96347 1.00404 0.94952 1.69996 1.17302 1.29544 1.33262 0.85799 0.79430 0.80548 0.78662 1.18848 1.20285 1.20412 1.17628 0.87390 0.82482 0.87869 1.90646 1.13000 1.86069 1.57134 1.20628 0.93384 0.95622 0.93225 1.22735 0.95330 0.99379 1.00776 1.22450 0.98962 0.87736 0.94175 1.66775 1.12140 1.33906 1.08645 1.17972 0.92382 0.86268 0.93114 1.43107 1.17481 1.12726 1.35274 1.22886 1.01643 0.86518 1.04698 1.22354 0.92349 1.01257 1.02254 1.70333 1.23576 1.03356 1.22810 1.25407 0.89110 0.98751 0.95339 1.21562 1.01668 0.91442 1.01710 0.91509 0.90951 0.94387 0.91646 0.82843 0.81477 0.80293 0.80908 0.77133 0.83641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.96 7.21 59.84 0.43 2.39 16 2 N -0.42 -9.93 3.02 -123.23 -0.37 -10.30 16 3 C -0.31 -7.97 9.33 -15.01 -0.14 -8.11 16 4 H 0.11 2.95 7.39 -52.49 -0.39 2.56 16 5 C 0.03 0.84 5.00 -17.45 -0.09 0.76 16 6 N -0.86 -20.95 10.67 55.50 0.59 -20.36 16 7 Si 0.93 19.14 29.59 -169.99 -5.03 14.11 16 8 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 9 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 10 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 11 C 0.46 10.67 7.32 -12.26 -0.09 10.58 16 12 O -0.58 -15.61 16.63 5.32 0.09 -15.52 16 13 C -0.02 -0.30 5.18 -104.67 -0.54 -0.85 16 14 C -0.16 -2.45 7.57 -38.99 -0.30 -2.75 16 15 C 0.12 1.62 11.17 -17.62 -0.20 1.43 16 16 N -0.50 -7.42 9.87 -12.35 -0.12 -7.54 16 17 C 0.33 5.13 7.50 -154.41 -1.16 3.98 16 18 N -0.40 -5.91 2.98 -63.85 -0.19 -6.10 16 19 C -0.03 -0.35 11.17 -16.45 -0.18 -0.53 16 20 C -0.04 -0.47 11.85 -17.82 -0.21 -0.68 16 21 N -0.48 -7.18 11.24 -14.46 -0.16 -7.34 16 22 C 0.20 2.75 11.89 -89.57 -1.07 1.69 16 23 C -0.14 -2.35 9.17 -38.81 -0.36 -2.71 16 24 H 0.07 1.35 6.85 -51.93 -0.36 0.99 16 25 H 0.07 1.55 6.97 -51.93 -0.36 1.18 16 26 H 0.04 0.65 5.36 -51.93 -0.28 0.37 16 27 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 28 H 0.15 2.23 5.90 -52.49 -0.31 1.92 16 29 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.18 1.97 8.06 -52.49 -0.42 1.55 16 31 H 0.17 1.66 8.06 -52.48 -0.42 1.24 16 32 H 0.21 2.43 7.07 -52.49 -0.37 2.06 16 33 H 0.15 2.31 6.78 -52.49 -0.36 1.95 16 LS Contribution 288.46 15.07 4.35 4.35 Total: -1.00 -30.70 288.46 -7.56 -38.27 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -2.82 Total: 5.25 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -3.89 Total: 5.19 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.25 Total: -51.64 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.09 Total: -15.52 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.70 -7.56 -38.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748545757.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.534 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds