Wall clock time and date at job start Mon Mar 30 2020 01:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36802 * 119.99658 * 2 1 4 4 H 1.08001 * 119.99414 * 197.41415 * 3 2 1 5 5 C 1.39103 * 120.00343 * 17.41085 * 3 2 1 6 6 N 1.31325 * 119.99510 * 17.84695 * 5 3 2 7 7 Si 1.86797 * 120.00069 * 197.84493 * 5 3 2 8 8 H 1.48499 * 109.47361 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47176 * 119.99972 * 7 5 3 10 10 H 1.48499 * 109.46910 * 240.00010 * 7 5 3 11 11 C 1.34775 * 120.00607 * 179.97438 * 2 1 3 12 12 O 1.21555 * 120.00491 * 183.92879 * 11 2 1 13 13 C 1.48007 * 119.99578 * 3.92633 * 11 2 1 14 14 C 1.40046 * 120.89674 * 318.72089 * 13 11 2 15 15 C 1.38000 * 119.12407 * 179.97438 * 14 13 11 16 16 N 1.31875 * 120.98944 * 0.02562 * 15 14 13 17 17 C 1.32257 * 121.99270 * 359.97438 * 16 15 14 18 18 N 1.39847 * 119.62132 * 180.02562 * 17 16 15 19 19 C 1.37167 * 126.48692 * 4.71344 * 18 17 16 20 20 C 1.34619 * 106.82993 * 179.84503 * 19 18 17 21 21 N 1.34148 * 108.21669 * 0.41952 * 20 19 18 22 22 C 1.30489 * 109.37179 * 359.73591 * 21 20 19 23 23 C 1.38863 * 120.75357 * 0.02562 * 17 16 15 24 24 H 1.09000 * 109.47560 * 273.39009 * 1 2 3 25 25 H 1.09004 * 109.47146 * 33.39230 * 1 2 3 26 26 H 1.08997 * 109.47276 * 153.39023 * 1 2 3 27 27 H 0.97006 * 119.99432 * 180.02562 * 6 5 3 28 28 H 1.08001 * 120.43960 * 359.95777 * 14 13 11 29 29 H 1.08000 * 119.50348 * 180.02562 * 15 14 13 30 30 H 1.07998 * 126.58937 * 359.97438 * 19 18 17 31 31 H 1.08003 * 125.89862 * 180.15310 * 20 19 18 32 32 H 1.07996 * 125.72395 * 179.97438 * 22 21 20 33 33 H 1.08002 * 120.53079 * 180.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1489 1.1848 0.0000 4 1 3.1918 1.2062 -0.2799 5 6 1.5012 2.3619 0.3605 6 7 0.3697 2.3115 1.0252 7 14 2.2408 4.0139 -0.1009 8 1 3.5100 3.7987 -0.8413 9 1 1.2869 4.7609 -0.9596 10 1 2.5139 4.7956 1.1318 11 6 2.1389 -1.1671 0.0005 12 8 3.3524 -1.1683 0.0726 13 6 1.4016 -2.4475 -0.0867 14 6 0.2151 -2.6443 0.6308 15 6 -0.4430 -3.8524 0.5221 16 7 0.0295 -4.8165 -0.2436 17 6 1.1457 -4.6757 -0.9389 18 7 1.6015 -5.7307 -1.7357 19 6 0.9563 -6.9199 -1.9618 20 6 1.7419 -7.6393 -2.7849 21 7 2.8421 -6.9190 -3.0502 22 6 2.7704 -5.7742 -2.4280 23 6 1.8702 -3.4922 -0.8868 24 1 -0.3634 0.0608 1.0258 25 1 -0.3634 0.8580 -0.5656 26 1 -0.3634 -0.9188 -0.4603 27 1 -0.0822 3.1324 1.2762 28 1 -0.1796 -1.8611 1.2611 29 1 -1.3587 -4.0107 1.0724 30 1 0.0005 -7.2205 -1.5587 31 1 1.5260 -8.6277 -3.1628 32 1 3.5151 -4.9926 -2.4578 33 1 2.7810 -3.3809 -1.4565 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748545757.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:22 Heat of formation + Delta-G solvation = 76.816638 kcal Electronic energy + Delta-G solvation = -19902.702727 eV Core-core repulsion = 16737.216680 eV Total energy + Delta-G solvation = -3165.486047 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.39536 -41.55380 -39.93498 -36.88737 -35.39671 -34.15997 -33.34194 -31.28397 -30.30992 -28.41558 -27.20348 -25.19066 -25.15690 -22.73496 -21.99526 -21.22801 -19.59650 -19.05932 -18.01920 -17.32795 -17.18605 -16.80596 -16.69922 -16.01690 -15.77255 -15.59846 -14.95393 -14.84939 -14.74632 -14.54379 -14.36096 -13.88961 -13.54249 -13.23549 -12.94265 -12.63183 -12.51080 -12.13925 -11.79077 -11.29282 -11.21937 -11.09365 -11.00932 -10.46327 -9.92132 -9.85408 -9.51024 -8.49306 -6.05167 -0.49972 -0.24776 1.10456 1.30959 1.36413 1.42079 1.54784 1.92641 2.04547 2.19396 2.62130 2.75645 3.00989 3.22935 3.47697 3.64874 3.69664 3.84184 3.85342 4.24466 4.35450 4.46628 4.50780 4.54975 4.67563 4.92811 5.01679 5.08754 5.24183 5.33667 5.36468 5.66741 5.92215 6.02113 6.31837 6.58385 6.90499 7.00672 7.25512 7.82186 8.52467 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.035550 B = 0.004282 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.442323 B = 6536.724443 C = 7092.939829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.430 5.430 3 C -0.352 4.352 4 H 0.078 0.922 5 C 0.009 3.991 6 N -0.875 5.875 7 Si 0.990 3.010 8 H -0.274 1.274 9 H -0.262 1.262 10 H -0.273 1.273 11 C 0.452 3.548 12 O -0.630 6.630 13 C -0.038 4.038 14 C -0.156 4.156 15 C 0.145 3.855 16 N -0.498 5.498 17 C 0.334 3.666 18 N -0.413 5.413 19 C -0.031 4.031 20 C -0.040 4.040 21 N -0.506 5.506 22 C 0.184 3.816 23 C -0.148 4.148 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.281 0.719 28 H 0.162 0.838 29 H 0.218 0.782 30 H 0.201 0.799 31 H 0.203 0.797 32 H 0.224 0.776 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.394 -10.848 -2.224 13.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.145 5.145 3 C -0.479 4.479 4 H 0.096 0.904 5 C -0.196 4.196 6 N -0.512 5.512 7 Si 0.813 3.187 8 H -0.199 1.199 9 H -0.187 1.187 10 H -0.198 1.198 11 C 0.242 3.758 12 O -0.520 6.520 13 C -0.049 4.049 14 C -0.177 4.177 15 C -0.012 4.012 16 N -0.211 5.211 17 C 0.107 3.893 18 N -0.095 5.095 19 C -0.160 4.160 20 C -0.185 4.185 21 N -0.224 5.224 22 C -0.097 4.097 23 C -0.171 4.171 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.180 0.820 29 H 0.235 0.765 30 H 0.218 0.782 31 H 0.220 0.780 32 H 0.241 0.759 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.841 -11.674 -2.636 13.785 hybrid contribution 0.407 2.066 0.501 2.164 sum -6.434 -9.609 -2.135 11.759 Atomic orbital electron populations 1.21917 0.78746 1.00531 1.02184 1.43760 1.07260 1.04421 1.59033 1.19743 0.97240 0.84360 1.46596 0.90423 1.26083 0.96712 1.02652 0.94138 1.70022 1.17648 1.30689 1.32843 0.84931 0.78524 0.76758 0.78497 1.19863 1.18709 1.19783 1.18365 0.87188 0.83961 0.86258 1.90590 1.15349 1.87251 1.58788 1.20250 0.95031 0.93730 0.95928 1.22854 0.93996 1.00737 1.00080 1.23191 0.99463 0.85900 0.92649 1.66952 1.11483 1.34206 1.08418 1.17945 0.92311 0.86012 0.93076 1.43204 1.17846 1.13021 1.35391 1.23317 1.02326 0.85775 1.04568 1.22900 0.91507 1.02218 1.01847 1.70354 1.24717 1.03922 1.23390 1.25762 0.89489 0.99123 0.95336 1.21519 1.01934 0.91737 1.01895 0.91564 0.92487 0.91218 0.90906 0.82030 0.76534 0.78221 0.78038 0.75945 0.83932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.34 7.21 127.77 0.92 5.27 16 2 N -0.43 -21.12 3.02 -662.06 -2.00 -23.12 16 3 C -0.35 -19.05 9.33 84.13 0.78 -18.26 16 4 H 0.08 4.55 7.39 -2.91 -0.02 4.53 16 5 C 0.01 0.45 5.00 84.98 0.43 0.87 16 6 N -0.88 -42.30 10.67 21.69 0.23 -42.07 16 7 Si 0.99 39.55 29.59 68.60 2.03 41.58 16 8 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 9 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 10 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 11 C 0.45 21.82 7.32 86.83 0.64 22.46 16 12 O -0.63 -35.65 16.63 -3.89 -0.06 -35.72 16 13 C -0.04 -1.38 5.18 -19.90 -0.10 -1.49 16 14 C -0.16 -4.37 7.57 22.65 0.17 -4.20 16 15 C 0.15 3.20 11.17 84.63 0.94 4.15 16 16 N -0.50 -12.98 9.87 -192.98 -1.90 -14.89 16 17 C 0.33 9.77 7.50 132.75 1.00 10.76 16 18 N -0.41 -11.36 2.98 -355.92 -1.06 -12.42 16 19 C -0.03 -0.72 11.17 83.03 0.93 0.21 16 20 C -0.04 -0.95 11.85 83.51 0.99 0.04 16 21 N -0.51 -14.44 11.24 -199.67 -2.24 -16.68 16 22 C 0.18 5.05 11.89 179.98 2.14 7.19 16 23 C -0.15 -4.89 9.17 22.77 0.21 -4.68 16 24 H 0.07 2.63 6.85 -2.39 -0.02 2.61 16 25 H 0.06 2.43 6.97 -2.38 -0.02 2.41 16 26 H 0.07 2.29 5.36 -2.39 -0.01 2.27 16 27 H 0.28 12.53 8.31 -92.70 -0.77 11.76 16 28 H 0.16 4.30 5.90 -2.91 -0.02 4.28 16 29 H 0.22 2.65 8.06 -2.91 -0.02 2.62 16 30 H 0.20 3.70 8.06 -2.91 -0.02 3.68 16 31 H 0.20 3.28 8.06 -2.91 -0.02 3.26 16 32 H 0.22 5.19 7.07 -2.91 -0.02 5.17 16 33 H 0.14 4.68 6.78 -2.91 -0.02 4.66 16 Total: -1.00 -68.49 288.46 5.19 -63.30 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 1.16 Total: 17.71 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 9.04 Total: 22.31 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -6.98 Total: -109.18 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -0.06 Total: -35.72 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Total: -68.49 5.19 -63.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748545757.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.115 kcal (2) G-P(sol) polarization free energy of solvation -68.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds