Wall clock time and date at job start Mon Mar 30 2020 01:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38623 * 120.47003 * 2 1 4 4 C 1.38590 * 118.49090 * 180.02562 * 3 2 1 5 5 C 1.38591 * 119.35623 * 359.97438 * 4 3 2 6 6 N 1.31504 * 120.90264 * 359.72445 * 5 4 3 7 7 C 1.32752 * 121.63893 * 0.56725 * 6 5 4 8 8 C 1.48128 * 119.72468 * 179.71025 * 7 6 5 9 9 O 1.21544 * 120.00013 * 173.94096 * 8 7 6 10 10 N 1.34775 * 119.99871 * 353.94150 * 8 7 6 11 11 C 1.40496 * 119.99948 * 180.02562 * 10 8 7 12 12 C 1.40669 * 126.08574 * 359.97214 * 11 10 8 13 13 N 1.30906 * 108.38448 * 179.75968 * 12 11 10 14 14 N 1.40061 * 108.41361 * 0.41347 * 13 12 11 15 15 C 1.37314 * 126.06841 * 179.85509 * 14 13 12 16 16 H 1.08003 * 120.00406 * 179.68813 * 15 14 13 17 17 C 1.38995 * 119.99461 * 359.95703 * 15 14 13 18 18 N 1.31294 * 120.00448 * 359.72829 * 17 15 14 19 19 Si 1.86800 * 119.99833 * 179.72964 * 17 15 14 20 20 H 1.48501 * 109.47215 * 59.99869 * 19 17 15 21 21 H 1.48497 * 109.47184 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46998 * 300.00168 * 19 17 15 23 23 C 1.35707 * 126.08846 * 180.02562 * 11 10 8 24 24 H 1.09006 * 109.46713 * 263.25226 * 1 2 3 25 25 H 1.08997 * 109.47407 * 23.25569 * 1 2 3 26 26 H 1.09003 * 109.47087 * 143.25969 * 1 2 3 27 27 H 1.08003 * 120.75185 * 0.05015 * 3 2 1 28 28 H 1.08001 * 120.31701 * 179.97438 * 4 3 2 29 29 H 1.07997 * 119.54838 * 180.02562 * 5 4 3 30 30 H 0.96997 * 120.00241 * 0.02562 * 10 8 7 31 31 H 1.08004 * 125.81380 * 0.06354 * 12 11 10 32 32 H 0.96996 * 120.00192 * 179.97438 * 18 17 15 33 33 H 1.08001 * 126.24737 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1948 0.0000 4 6 3.5950 1.1469 -0.0005 5 6 4.2323 -0.0838 -0.0005 6 7 3.5409 -1.2024 0.0054 7 6 2.2134 -1.2005 0.0004 8 6 1.4771 -2.4859 0.0010 9 8 0.2664 -2.4927 0.1076 10 7 2.1498 -3.6478 -0.1167 11 6 1.4515 -4.8669 -0.1167 12 6 0.0583 -5.0237 -0.0016 13 7 -0.2184 -6.3024 -0.0471 14 7 0.9824 -7.0104 -0.1829 15 6 1.1116 -8.3750 -0.2634 16 1 2.0900 -8.8194 -0.3723 17 6 -0.0172 -9.1843 -0.2101 18 7 -1.2066 -8.6442 -0.0776 19 14 0.1578 -11.0404 -0.3271 20 1 1.0029 -11.5294 0.7917 21 1 -1.1845 -11.6702 -0.2462 22 1 0.7943 -11.3969 -1.6206 23 6 2.0009 -6.1029 -0.2268 24 1 -0.3633 -0.1208 1.0206 25 1 -0.3634 0.9441 -0.4057 26 1 -0.3633 -0.8235 -0.6148 27 1 1.6900 2.1414 0.0008 28 1 4.1720 2.0599 -0.0010 29 1 5.3115 -0.1247 -0.0005 30 1 3.1161 -3.6424 -0.2014 31 1 -0.6612 -4.2248 0.1014 32 1 -1.9943 -9.2089 -0.0408 33 1 3.0523 -6.3275 -0.3297 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749937500.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:53 Heat of formation + Delta-G solvation = 89.216485 kcal Electronic energy + Delta-G solvation = -19609.546006 eV Core-core repulsion = 16444.597658 eV Total energy + Delta-G solvation = -3164.948349 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.68442 -39.60091 -38.16735 -34.53287 -33.50352 -32.94713 -32.02771 -30.20402 -28.11205 -27.10434 -25.16391 -24.16080 -22.29081 -21.16358 -20.52309 -19.35938 -17.89541 -17.15857 -16.57599 -15.69930 -15.41549 -15.13068 -14.95159 -14.66402 -13.98031 -13.72809 -13.34945 -13.23345 -12.99331 -12.86670 -12.65784 -12.22488 -11.95061 -11.65613 -11.34473 -11.22377 -10.91444 -10.54143 -10.14294 -9.89435 -9.82645 -9.15467 -9.06611 -8.94175 -8.78383 -8.03660 -6.64925 -6.53807 -4.20167 0.66090 1.11490 2.85665 3.04868 3.06472 3.10481 3.54036 3.61925 3.87372 3.94221 4.23456 4.49906 4.63858 4.71128 4.82726 4.85821 5.03487 5.04458 5.32914 5.50641 5.67916 5.84430 5.91707 6.10235 6.29146 6.33657 6.49200 6.62380 6.93197 6.97698 7.16185 7.26484 7.70423 7.88116 8.22634 8.32657 8.64468 8.87554 9.39763 9.68965 10.42130 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.049471 B = 0.003701 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.849107 B = 7564.149945 C = 8111.892425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.075 4.075 3 C -0.088 4.088 4 C -0.155 4.155 5 C 0.087 3.913 6 N -0.459 5.459 7 C 0.087 3.913 8 C 0.548 3.452 9 O -0.526 6.526 10 N -0.599 5.599 11 C -0.062 4.062 12 C -0.031 4.031 13 N -0.261 5.261 14 N -0.142 5.142 15 C -0.323 4.323 16 H 0.116 0.884 17 C 0.046 3.954 18 N -0.770 5.770 19 Si 0.935 3.065 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.081 4.081 24 H 0.079 0.921 25 H 0.056 0.944 26 H 0.104 0.896 27 H 0.138 0.862 28 H 0.137 0.863 29 H 0.160 0.840 30 H 0.407 0.593 31 H 0.177 0.823 32 H 0.275 0.725 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.543 15.310 -0.343 17.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.078 4.078 3 C -0.114 4.114 4 C -0.175 4.175 5 C -0.073 4.073 6 N -0.170 5.170 7 C -0.051 4.051 8 C 0.333 3.667 9 O -0.404 6.404 10 N -0.239 5.239 11 C -0.168 4.168 12 C -0.206 4.206 13 N -0.092 5.092 14 N 0.091 4.909 15 C -0.455 4.455 16 H 0.134 0.866 17 C -0.171 4.171 18 N -0.396 5.396 19 Si 0.759 3.241 20 H -0.192 1.192 21 H -0.201 1.201 22 H -0.192 1.192 23 C -0.232 4.232 24 H 0.097 0.903 25 H 0.075 0.925 26 H 0.122 0.878 27 H 0.156 0.844 28 H 0.154 0.846 29 H 0.177 0.823 30 H 0.241 0.759 31 H 0.194 0.806 32 H 0.086 0.914 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.916 13.499 -0.210 15.169 hybrid contribution 1.133 0.780 -0.093 1.379 sum 8.049 14.279 -0.303 16.394 Atomic orbital electron populations 1.21078 0.88882 1.03264 1.04226 1.20966 0.98584 0.92275 0.95986 1.21533 0.94140 0.98039 0.97721 1.22301 0.95278 0.99695 1.00250 1.22741 1.00354 0.87419 0.96742 1.67581 1.07331 1.31878 1.10175 1.21181 0.89577 0.93997 1.00357 1.17622 0.86655 0.82510 0.79870 1.90625 1.12991 1.85859 1.50934 1.42346 1.10086 1.03534 1.67967 1.17300 0.92251 0.83663 1.23561 1.24133 0.93427 0.95409 1.07672 1.78246 1.03597 1.01928 1.25393 1.44541 1.02786 1.04886 1.38682 1.19844 0.95843 0.77035 1.52813 0.86624 1.25642 0.94569 1.01384 0.95490 1.70206 0.98060 1.36407 1.34958 0.85891 0.78306 0.80444 0.79476 1.19151 1.20147 1.19165 1.21282 0.94154 0.88294 1.19451 0.90292 0.92549 0.87796 0.84382 0.84550 0.82317 0.75862 0.80602 0.91413 0.83575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 8.74 36.00 0.31 -1.19 16 2 C -0.08 -0.99 5.93 -104.09 -0.62 -1.61 16 3 C -0.09 -0.87 9.83 -39.31 -0.39 -1.26 16 4 C -0.16 -1.35 10.11 -39.32 -0.40 -1.75 16 5 C 0.09 0.90 11.18 -17.56 -0.20 0.70 16 6 N -0.46 -6.41 9.56 -9.80 -0.09 -6.50 16 7 C 0.09 1.36 6.75 -83.02 -0.56 0.80 16 8 C 0.55 10.48 7.72 -12.20 -0.09 10.39 16 9 O -0.53 -11.10 10.46 5.33 0.06 -11.05 16 10 N -0.60 -11.81 5.45 -10.78 -0.06 -11.87 16 11 C -0.06 -1.48 6.90 -83.87 -0.58 -2.06 16 12 C -0.03 -0.82 10.85 -17.03 -0.18 -1.01 16 13 N -0.26 -7.66 10.39 30.81 0.32 -7.34 16 14 N -0.14 -3.95 3.74 -11.40 -0.04 -3.99 16 15 C -0.32 -8.66 10.25 -14.82 -0.15 -8.81 16 16 H 0.12 2.76 7.83 -52.48 -0.41 2.35 16 17 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 18 N -0.77 -21.65 11.81 55.50 0.66 -20.99 16 19 Si 0.94 19.06 29.55 -169.99 -5.02 14.04 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 23 C -0.08 -1.96 11.49 -16.39 -0.19 -2.15 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.06 0.56 8.05 -51.93 -0.42 0.14 16 26 H 0.10 1.61 5.86 -51.93 -0.30 1.30 16 27 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 28 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 29 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.41 6.94 8.17 -40.82 -0.33 6.61 16 31 H 0.18 4.57 5.92 -52.48 -0.31 4.26 16 32 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.15 2.99 8.06 -52.49 -0.42 2.57 16 LS Contribution 292.03 15.07 4.40 4.40 Total: -1.00 -33.01 292.03 -5.95 -38.95 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -3.03 Total: 11.18 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -3.14 Total: -6.83 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.78 Total: -50.69 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.06 Total: -11.05 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.01 -5.95 -38.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749937500.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.171 kcal (2) G-P(sol) polarization free energy of solvation -33.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds