Wall clock time and date at job start Mon Mar 30 2020 01:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38623 * 120.47003 * 2 1 4 4 C 1.38590 * 118.49090 * 180.02562 * 3 2 1 5 5 C 1.38591 * 119.35623 * 359.97438 * 4 3 2 6 6 N 1.31504 * 120.90264 * 359.72445 * 5 4 3 7 7 C 1.32752 * 121.63893 * 0.56725 * 6 5 4 8 8 C 1.48128 * 119.72468 * 179.71025 * 7 6 5 9 9 O 1.21544 * 120.00013 * 173.94096 * 8 7 6 10 10 N 1.34775 * 119.99871 * 353.94150 * 8 7 6 11 11 C 1.40496 * 119.99948 * 180.02562 * 10 8 7 12 12 C 1.40669 * 126.08574 * 359.97214 * 11 10 8 13 13 N 1.30906 * 108.38448 * 179.75968 * 12 11 10 14 14 N 1.40061 * 108.41361 * 0.41347 * 13 12 11 15 15 C 1.37314 * 126.06841 * 179.85509 * 14 13 12 16 16 H 1.08003 * 120.00406 * 179.68813 * 15 14 13 17 17 C 1.38995 * 119.99461 * 359.95703 * 15 14 13 18 18 N 1.31294 * 120.00448 * 359.72829 * 17 15 14 19 19 Si 1.86800 * 119.99833 * 179.72964 * 17 15 14 20 20 H 1.48501 * 109.47215 * 59.99869 * 19 17 15 21 21 H 1.48497 * 109.47184 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46998 * 300.00168 * 19 17 15 23 23 C 1.35707 * 126.08846 * 180.02562 * 11 10 8 24 24 H 1.09006 * 109.46713 * 263.25226 * 1 2 3 25 25 H 1.08997 * 109.47407 * 23.25569 * 1 2 3 26 26 H 1.09003 * 109.47087 * 143.25969 * 1 2 3 27 27 H 1.08003 * 120.75185 * 0.05015 * 3 2 1 28 28 H 1.08001 * 120.31701 * 179.97438 * 4 3 2 29 29 H 1.07997 * 119.54838 * 180.02562 * 5 4 3 30 30 H 0.96997 * 120.00241 * 0.02562 * 10 8 7 31 31 H 1.08004 * 125.81380 * 0.06354 * 12 11 10 32 32 H 0.96996 * 120.00192 * 179.97438 * 18 17 15 33 33 H 1.08001 * 126.24737 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1948 0.0000 4 6 3.5950 1.1469 -0.0005 5 6 4.2323 -0.0838 -0.0005 6 7 3.5409 -1.2024 0.0054 7 6 2.2134 -1.2005 0.0004 8 6 1.4771 -2.4859 0.0010 9 8 0.2664 -2.4927 0.1076 10 7 2.1498 -3.6478 -0.1167 11 6 1.4515 -4.8669 -0.1167 12 6 0.0583 -5.0237 -0.0016 13 7 -0.2184 -6.3024 -0.0471 14 7 0.9824 -7.0104 -0.1829 15 6 1.1116 -8.3750 -0.2634 16 1 2.0900 -8.8194 -0.3723 17 6 -0.0172 -9.1843 -0.2101 18 7 -1.2066 -8.6442 -0.0776 19 14 0.1578 -11.0404 -0.3271 20 1 1.0029 -11.5294 0.7917 21 1 -1.1845 -11.6702 -0.2462 22 1 0.7943 -11.3969 -1.6206 23 6 2.0009 -6.1029 -0.2268 24 1 -0.3633 -0.1208 1.0206 25 1 -0.3634 0.9441 -0.4057 26 1 -0.3633 -0.8235 -0.6148 27 1 1.6900 2.1414 0.0008 28 1 4.1720 2.0599 -0.0010 29 1 5.3115 -0.1247 -0.0005 30 1 3.1161 -3.6424 -0.2014 31 1 -0.6612 -4.2248 0.1014 32 1 -1.9943 -9.2089 -0.0408 33 1 3.0523 -6.3275 -0.3297 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749937500.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:53 Heat of formation + Delta-G solvation = 65.996244 kcal Electronic energy + Delta-G solvation = -19610.552912 eV Core-core repulsion = 16444.597658 eV Total energy + Delta-G solvation = -3165.955254 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.96748 -41.27265 -39.65517 -36.12728 -35.13898 -34.25423 -33.01297 -32.20391 -29.80532 -28.31240 -26.90846 -25.41511 -23.29238 -22.90218 -22.08420 -21.21834 -19.50112 -18.69190 -17.63741 -17.43248 -16.78993 -16.48754 -16.28278 -15.97050 -15.57173 -15.34395 -14.86459 -14.57162 -14.51126 -13.99173 -13.66834 -13.48899 -13.42916 -13.16936 -12.93777 -12.87073 -12.70699 -12.12935 -11.84162 -11.01629 -10.94303 -10.82565 -10.73279 -10.32146 -10.12154 -9.97068 -8.53653 -8.47517 -6.24885 -0.31910 0.28666 1.25293 1.39881 1.56742 1.59410 1.87714 2.02056 2.25262 2.46561 2.83621 2.92317 3.08638 3.29146 3.81251 3.88930 4.01709 4.09206 4.41650 4.52206 4.57059 4.63150 4.81062 4.81708 4.98683 5.02735 5.15107 5.20119 5.28496 5.34363 5.51573 5.74446 5.94195 6.28536 6.60241 6.71482 6.89467 7.30708 7.44064 7.65579 8.51785 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.049471 B = 0.003701 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.849107 B = 7564.149945 C = 8111.892425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.084 4.084 4 C -0.130 4.130 5 C 0.082 3.918 6 N -0.480 5.480 7 C 0.052 3.948 8 C 0.545 3.455 9 O -0.554 6.554 10 N -0.600 5.600 11 C -0.049 4.049 12 C -0.055 4.055 13 N -0.308 5.308 14 N -0.165 5.165 15 C -0.356 4.356 16 H 0.141 0.859 17 C -0.006 4.006 18 N -0.823 5.823 19 Si 1.022 2.978 20 H -0.253 1.253 21 H -0.277 1.277 22 H -0.253 1.253 23 C -0.081 4.081 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.175 0.825 28 H 0.184 0.816 29 H 0.194 0.806 30 H 0.419 0.581 31 H 0.172 0.828 32 H 0.277 0.723 33 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.519 17.213 -0.536 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.090 4.090 3 C -0.110 4.110 4 C -0.149 4.149 5 C -0.079 4.079 6 N -0.192 5.192 7 C -0.085 4.085 8 C 0.333 3.667 9 O -0.433 6.433 10 N -0.243 5.243 11 C -0.156 4.156 12 C -0.230 4.230 13 N -0.140 5.140 14 N 0.066 4.934 15 C -0.487 4.487 16 H 0.158 0.842 17 C -0.218 4.218 18 N -0.451 5.451 19 Si 0.840 3.160 20 H -0.177 1.177 21 H -0.202 1.202 22 H -0.177 1.177 23 C -0.232 4.232 24 H 0.087 0.913 25 H 0.108 0.892 26 H 0.087 0.913 27 H 0.192 0.808 28 H 0.202 0.798 29 H 0.211 0.789 30 H 0.257 0.743 31 H 0.189 0.811 32 H 0.087 0.913 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 9.922 15.442 -0.404 18.359 hybrid contribution 0.343 0.510 -0.030 0.615 sum 10.265 15.952 -0.434 18.974 Atomic orbital electron populations 1.20969 0.89401 1.03574 1.03135 1.21113 0.98540 0.92923 0.96382 1.21966 0.94919 0.97877 0.96197 1.22849 0.94967 1.00798 0.96287 1.23469 1.01903 0.87125 0.95364 1.67479 1.06522 1.34146 1.11017 1.20642 0.90580 0.92467 1.04776 1.18400 0.86685 0.83630 0.78000 1.90611 1.14539 1.86621 1.51530 1.42320 1.10565 1.02434 1.69029 1.17398 0.91439 0.85413 1.21313 1.24194 0.95000 0.94845 1.08995 1.78134 1.05579 1.03081 1.27179 1.44834 1.02952 1.05750 1.39832 1.20623 0.97464 0.77091 1.53536 0.84183 1.26912 0.93677 1.07134 0.94063 1.70390 0.99229 1.38717 1.36758 0.84624 0.78361 0.72780 0.80241 1.17708 1.20156 1.17727 1.21951 0.95380 0.87820 1.18032 0.91251 0.89247 0.91265 0.80785 0.79830 0.78874 0.74332 0.81113 0.91294 0.79764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.92 8.74 71.23 0.62 -2.30 16 2 C -0.09 -2.17 5.93 -19.52 -0.12 -2.28 16 3 C -0.08 -1.31 9.83 22.45 0.22 -1.09 16 4 C -0.13 -1.55 10.11 22.44 0.23 -1.32 16 5 C 0.08 1.37 11.18 84.83 0.95 2.31 16 6 N -0.48 -12.59 9.56 -184.93 -1.77 -14.36 16 7 C 0.05 1.59 6.75 41.89 0.28 1.88 16 8 C 0.55 21.67 7.72 86.87 0.67 22.34 16 9 O -0.55 -24.91 10.46 -3.86 -0.04 -24.96 16 10 N -0.60 -24.28 5.45 -306.29 -1.67 -25.95 16 11 C -0.05 -2.45 6.90 37.76 0.26 -2.19 16 12 C -0.06 -3.13 10.85 85.42 0.93 -2.20 16 13 N -0.31 -19.10 10.39 -56.45 -0.59 -19.69 16 14 N -0.16 -9.50 3.74 -190.00 -0.71 -10.21 16 15 C -0.36 -19.38 10.25 84.02 0.86 -18.52 16 16 H 0.14 6.60 7.83 -2.91 -0.02 6.58 16 17 C -0.01 -0.32 5.50 84.95 0.47 0.15 16 18 N -0.82 -48.27 11.81 21.66 0.26 -48.02 16 19 Si 1.02 39.19 29.55 68.60 2.03 41.22 16 20 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 21 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 22 H -0.25 -9.08 7.11 99.48 0.71 -8.38 16 23 C -0.08 -4.01 11.49 83.38 0.96 -3.05 16 24 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 25 H 0.09 1.61 8.05 -2.39 -0.02 1.59 16 26 H 0.07 2.28 5.86 -2.39 -0.01 2.26 16 27 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 28 H 0.18 0.55 8.06 -2.91 -0.02 0.52 16 29 H 0.19 1.76 8.06 -2.91 -0.02 1.74 16 30 H 0.42 14.37 8.17 -92.71 -0.76 13.62 16 31 H 0.17 9.61 5.92 -2.91 -0.02 9.60 16 32 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 33 H 0.19 7.35 8.06 -2.91 -0.02 7.32 16 Total: -1.00 -78.34 292.03 4.25 -74.09 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: 0.41 Total: 34.15 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 6.33 Total: -6.28 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -4.48 Total: -118.23 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.04 Total: -24.96 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -78.34 4.25 -74.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749937500.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.091 kcal (2) G-P(sol) polarization free energy of solvation -78.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds