Wall clock time and date at job start Mon Mar 30 2020 01:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40302 * 126.84359 * 2 1 4 4 N 1.28730 * 108.17946 * 179.97438 * 3 2 1 5 5 C 1.33272 * 109.99869 * 0.02562 * 4 3 2 6 6 C 1.35829 * 108.86617 * 359.75129 * 5 4 3 7 7 N 1.39440 * 126.68028 * 180.27739 * 6 5 4 8 8 C 1.34783 * 119.99535 * 0.13465 * 7 6 5 9 9 O 1.21561 * 120.00353 * 0.02562 * 8 7 6 10 10 C 1.47850 * 119.99651 * 180.02562 * 8 7 6 11 11 C 1.39936 * 120.02973 * 359.72132 * 10 8 7 12 12 C 1.38328 * 120.35926 * 179.76385 * 11 10 8 13 13 C 1.37756 * 120.41098 * 0.51884 * 12 11 10 14 14 C 1.40755 * 120.04047 * 359.74092 * 13 12 11 15 15 C 1.41445 * 120.17427 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00084 * 24.43082 * 15 14 13 17 17 C 1.39938 * 119.99671 * 204.43738 * 15 14 13 18 18 N 1.30826 * 120.00269 * 17.89021 * 17 15 14 19 19 Si 1.86804 * 119.99586 * 197.88968 * 17 15 14 20 20 H 1.48501 * 109.47241 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47126 * 119.99655 * 19 17 15 22 22 H 1.48501 * 109.46829 * 240.00100 * 19 17 15 23 23 C 1.39012 * 120.02372 * 180.02562 * 10 8 7 24 24 H 1.08994 * 109.47301 * 90.02326 * 1 2 3 25 25 H 1.09002 * 109.46862 * 210.02212 * 1 2 3 26 26 H 1.09003 * 109.47559 * 330.01863 * 1 2 3 27 27 H 1.08000 * 125.56815 * 180.02562 * 5 4 3 28 28 H 0.96998 * 120.00555 * 180.14144 * 7 6 5 29 29 H 1.08007 * 119.82002 * 0.02562 * 11 10 8 30 30 H 1.07994 * 119.79465 * 180.24173 * 12 11 10 31 31 H 1.07998 * 119.98184 * 179.76130 * 13 12 11 32 32 H 0.97002 * 119.99352 * 180.02562 * 18 17 15 33 33 H 1.07995 * 120.20405 * 359.95350 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3063 1.1228 0.0000 4 7 3.5259 0.7108 0.0005 5 6 3.5569 -0.6215 0.0004 6 6 2.2822 -1.0905 0.0052 7 7 1.8867 -2.4277 0.0121 8 6 2.8149 -3.4049 0.0172 9 8 3.9968 -3.1207 0.0163 10 6 2.3956 -4.8227 0.0239 11 6 1.0352 -5.1506 0.0308 12 6 0.6352 -6.4747 0.0322 13 6 1.5708 -7.4858 0.0375 14 6 2.9437 -7.1754 0.0361 15 6 3.9068 -8.2113 0.0410 16 1 3.6509 -9.1884 -0.3412 17 6 5.1912 -7.9700 0.5413 18 7 5.4098 -6.9347 1.3107 19 14 6.5937 -9.1263 0.1105 20 1 6.0882 -10.2121 -0.7675 21 1 7.6579 -8.3712 -0.5982 22 1 7.1496 -9.7153 1.3552 23 6 3.3524 -5.8310 0.0297 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5135 27 1 4.4498 -1.2291 0.0011 28 1 0.9436 -2.6545 0.0131 29 1 0.2935 -4.3654 0.0308 30 1 -0.4171 -6.7174 0.0336 31 1 1.2508 -8.5172 0.0425 32 1 6.3003 -6.7674 1.6571 33 1 4.4034 -5.5827 0.0286 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752951391.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:38 Heat of formation + Delta-G solvation = 87.807322 kcal Electronic energy + Delta-G solvation = -19759.883789 eV Core-core repulsion = 16594.874334 eV Total energy + Delta-G solvation = -3165.009455 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.96086 -39.58621 -37.30633 -35.28937 -33.97505 -33.69055 -30.79232 -29.68737 -29.01850 -27.63781 -25.52784 -23.77933 -22.20490 -21.42861 -20.96537 -19.67976 -18.28091 -17.59524 -16.29537 -16.19764 -16.01594 -15.23224 -14.85272 -14.52425 -14.28698 -14.01147 -13.44031 -13.36431 -13.06715 -12.95636 -12.71343 -11.85560 -11.70183 -11.41513 -11.23103 -11.15945 -10.96375 -10.88604 -10.63007 -10.23701 -9.89512 -9.70541 -9.45488 -9.36564 -8.27485 -7.84529 -7.72640 -6.96274 -4.57910 1.29174 1.94072 1.98308 2.63899 2.81276 3.00111 3.03381 3.06146 3.13023 3.57425 3.81234 4.33699 4.44219 4.83041 4.87170 5.08210 5.23147 5.39311 5.40026 5.55605 5.76886 5.89566 6.03423 6.50680 6.52567 6.76341 6.77426 6.80627 7.02888 7.15686 7.31219 7.49343 7.61521 7.77775 7.96939 8.31141 8.33042 8.41262 8.62925 8.64726 9.98385 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.025991 B = 0.004672 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.039653 B = 5991.309786 C = 6981.946305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.396 5.396 3 N -0.089 5.089 4 N -0.225 5.225 5 C -0.092 4.092 6 C 0.294 3.706 7 N -0.646 5.646 8 C 0.574 3.426 9 O -0.506 6.506 10 C -0.126 4.126 11 C -0.224 4.224 12 C -0.092 4.092 13 C -0.209 4.209 14 C 0.099 3.901 15 C -0.454 4.454 16 H 0.084 0.916 17 C 0.073 3.927 18 N -0.780 5.780 19 Si 0.911 3.089 20 H -0.259 1.259 21 H -0.269 1.269 22 H -0.273 1.273 23 C -0.085 4.085 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.209 0.791 28 H 0.413 0.587 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.287 0.713 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.571 5.368 -1.621 10.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.191 5.191 3 N -0.068 5.068 4 N -0.094 5.094 5 C -0.252 4.252 6 C 0.066 3.934 7 N -0.296 5.296 8 C 0.366 3.634 9 O -0.379 6.379 10 C -0.129 4.129 11 C -0.245 4.245 12 C -0.110 4.110 13 C -0.229 4.229 14 C 0.096 3.904 15 C -0.483 4.483 16 H 0.102 0.898 17 C -0.147 4.147 18 N -0.403 5.403 19 Si 0.735 3.265 20 H -0.182 1.182 21 H -0.194 1.194 22 H -0.198 1.198 23 C -0.105 4.105 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.118 0.882 27 H 0.225 0.775 28 H 0.251 0.749 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.495 7.151 -1.471 10.463 hybrid contribution -0.354 -1.671 -0.017 1.708 sum -7.848 5.480 -1.488 9.687 Atomic orbital electron populations 1.21982 0.73881 1.05080 1.04085 1.50502 1.08002 1.04451 1.56120 1.81971 0.93829 1.04065 1.26933 1.74175 1.12773 1.11837 1.10569 1.23607 0.96941 0.90198 1.14485 1.18983 0.91460 0.81719 1.01228 1.43189 1.12041 1.00711 1.73666 1.19082 0.84534 0.85612 0.74160 1.90651 1.17110 1.82940 1.47212 1.19146 0.94840 0.88893 1.10066 1.20257 0.92853 0.95646 1.15697 1.20426 0.97501 0.92750 1.00343 1.21140 0.93158 0.97329 1.11250 1.17600 0.91744 0.92249 0.88783 1.19679 0.94914 0.98296 1.35379 0.89759 1.26000 1.00319 0.95867 0.92523 1.69768 1.24197 1.25261 1.21120 0.86199 0.80248 0.80608 0.79434 1.18239 1.19371 1.19782 1.21673 0.99141 0.91169 0.98529 0.89849 0.89549 0.88211 0.77478 0.74942 0.89434 0.88618 0.88328 0.90174 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.72 11.40 59.85 0.68 1.40 16 2 N -0.40 -5.46 4.09 -67.00 -0.27 -5.73 16 3 N -0.09 -1.47 13.81 60.35 0.83 -0.64 16 4 N -0.22 -4.09 12.32 30.24 0.37 -3.72 16 5 C -0.09 -1.67 10.76 -17.79 -0.19 -1.86 16 6 C 0.29 4.72 7.75 -152.37 -1.18 3.54 16 7 N -0.65 -9.92 5.37 -12.15 -0.07 -9.99 16 8 C 0.57 11.27 7.74 -12.32 -0.10 11.17 16 9 O -0.51 -11.26 13.50 5.31 0.07 -11.19 16 10 C -0.13 -2.66 5.87 -105.04 -0.62 -3.28 16 11 C -0.22 -4.15 9.55 -38.91 -0.37 -4.53 16 12 C -0.09 -1.76 10.01 -39.72 -0.40 -2.15 16 13 C -0.21 -4.54 9.78 -38.81 -0.38 -4.92 16 14 C 0.10 2.42 5.57 -106.87 -0.60 1.82 16 15 C -0.45 -11.14 9.05 -37.72 -0.34 -11.48 16 16 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 17 C 0.07 1.73 5.14 -17.34 -0.09 1.64 16 18 N -0.78 -19.38 10.96 55.55 0.61 -18.77 16 19 Si 0.91 17.72 29.60 -169.99 -5.03 12.69 16 20 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 22 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 23 C -0.09 -2.07 8.24 -38.44 -0.32 -2.39 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.09 0.51 7.64 -51.93 -0.40 0.11 16 26 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.21 3.98 5.83 -52.49 -0.31 3.67 16 28 H 0.41 4.95 6.17 -40.82 -0.25 4.70 16 29 H 0.09 1.26 6.38 -52.48 -0.33 0.93 16 30 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 32 H 0.29 6.54 8.30 -40.82 -0.34 6.21 16 33 H 0.14 3.62 5.74 -52.49 -0.30 3.32 16 LS Contribution 292.15 15.07 4.40 4.40 Total: -1.00 -28.89 292.15 -5.81 -34.69 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -2.83 Total: 9.28 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -3.89 Total: -11.03 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 1.48 Total: -38.85 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.07 Total: -11.19 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.89 -5.81 -34.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752951391.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.500 kcal (2) G-P(sol) polarization free energy of solvation -28.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds