Wall clock time and date at job start Mon Mar 30 2020 01:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40302 * 126.84359 * 2 1 4 4 N 1.28730 * 108.17946 * 179.97438 * 3 2 1 5 5 C 1.33272 * 109.99869 * 0.02562 * 4 3 2 6 6 C 1.35829 * 108.86617 * 359.75129 * 5 4 3 7 7 N 1.39440 * 126.68028 * 180.27739 * 6 5 4 8 8 C 1.34783 * 119.99535 * 0.13465 * 7 6 5 9 9 O 1.21561 * 120.00353 * 0.02562 * 8 7 6 10 10 C 1.47850 * 119.99651 * 180.02562 * 8 7 6 11 11 C 1.39936 * 120.02973 * 359.72132 * 10 8 7 12 12 C 1.38328 * 120.35926 * 179.76385 * 11 10 8 13 13 C 1.37756 * 120.41098 * 0.51884 * 12 11 10 14 14 C 1.40755 * 120.04047 * 359.74092 * 13 12 11 15 15 C 1.41445 * 120.17427 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00084 * 24.43082 * 15 14 13 17 17 C 1.39938 * 119.99671 * 204.43738 * 15 14 13 18 18 N 1.30826 * 120.00269 * 17.89021 * 17 15 14 19 19 Si 1.86804 * 119.99586 * 197.88968 * 17 15 14 20 20 H 1.48501 * 109.47241 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47126 * 119.99655 * 19 17 15 22 22 H 1.48501 * 109.46829 * 240.00100 * 19 17 15 23 23 C 1.39012 * 120.02372 * 180.02562 * 10 8 7 24 24 H 1.08994 * 109.47301 * 90.02326 * 1 2 3 25 25 H 1.09002 * 109.46862 * 210.02212 * 1 2 3 26 26 H 1.09003 * 109.47559 * 330.01863 * 1 2 3 27 27 H 1.08000 * 125.56815 * 180.02562 * 5 4 3 28 28 H 0.96998 * 120.00555 * 180.14144 * 7 6 5 29 29 H 1.08007 * 119.82002 * 0.02562 * 11 10 8 30 30 H 1.07994 * 119.79465 * 180.24173 * 12 11 10 31 31 H 1.07998 * 119.98184 * 179.76130 * 13 12 11 32 32 H 0.97002 * 119.99352 * 180.02562 * 18 17 15 33 33 H 1.07995 * 120.20405 * 359.95350 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3063 1.1228 0.0000 4 7 3.5259 0.7108 0.0005 5 6 3.5569 -0.6215 0.0004 6 6 2.2822 -1.0905 0.0052 7 7 1.8867 -2.4277 0.0121 8 6 2.8149 -3.4049 0.0172 9 8 3.9968 -3.1207 0.0163 10 6 2.3956 -4.8227 0.0239 11 6 1.0352 -5.1506 0.0308 12 6 0.6352 -6.4747 0.0322 13 6 1.5708 -7.4858 0.0375 14 6 2.9437 -7.1754 0.0361 15 6 3.9068 -8.2113 0.0410 16 1 3.6509 -9.1884 -0.3412 17 6 5.1912 -7.9700 0.5413 18 7 5.4098 -6.9347 1.3107 19 14 6.5937 -9.1263 0.1105 20 1 6.0882 -10.2121 -0.7675 21 1 7.6579 -8.3712 -0.5982 22 1 7.1496 -9.7153 1.3552 23 6 3.3524 -5.8310 0.0297 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5135 27 1 4.4498 -1.2291 0.0011 28 1 0.9436 -2.6545 0.0131 29 1 0.2935 -4.3654 0.0308 30 1 -0.4171 -6.7174 0.0336 31 1 1.2508 -8.5172 0.0425 32 1 6.3003 -6.7674 1.6571 33 1 4.4034 -5.5827 0.0286 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752951391.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:37 Heat of formation + Delta-G solvation = 69.239952 kcal Electronic energy + Delta-G solvation = -19760.688930 eV Core-core repulsion = 16594.874334 eV Total energy + Delta-G solvation = -3165.814596 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.24743 -41.11662 -38.94933 -36.66817 -35.60905 -34.91619 -32.39323 -31.34671 -30.42444 -28.55249 -27.25233 -25.30031 -23.50288 -22.97201 -22.42205 -21.20680 -19.69216 -19.06595 -17.75888 -17.52198 -17.38181 -16.80325 -16.43762 -15.95585 -15.79844 -15.25218 -15.11101 -14.58346 -14.30662 -14.20901 -13.81400 -13.52504 -13.04103 -12.97805 -12.80977 -12.65204 -12.50994 -12.21993 -12.14461 -11.93225 -11.53084 -11.09226 -11.05312 -10.82042 -9.72747 -9.43999 -9.38750 -8.68300 -6.38759 -0.08468 0.46425 0.75123 0.99281 1.38824 1.40098 1.48607 1.54012 1.94934 2.00569 2.19498 2.74643 3.41222 3.59621 3.66795 3.84163 4.00402 4.31746 4.40029 4.49484 4.52744 4.56693 4.70337 4.88982 5.06334 5.14215 5.22636 5.29875 5.47489 5.54241 5.77718 5.88091 6.02832 6.14493 6.29467 6.57591 6.84831 6.89663 6.91677 7.09145 8.28443 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.025991 B = 0.004672 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.039653 B = 5991.309786 C = 6981.946305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.373 5.373 3 N -0.094 5.094 4 N -0.249 5.249 5 C -0.113 4.113 6 C 0.292 3.708 7 N -0.620 5.620 8 C 0.575 3.425 9 O -0.540 6.540 10 C -0.132 4.132 11 C -0.195 4.195 12 C -0.092 4.092 13 C -0.212 4.212 14 C 0.068 3.932 15 C -0.495 4.495 16 H 0.084 0.916 17 C 0.033 3.967 18 N -0.823 5.823 19 Si 0.978 3.022 20 H -0.252 1.252 21 H -0.271 1.271 22 H -0.266 1.266 23 C -0.124 4.124 24 H 0.108 0.892 25 H 0.115 0.885 26 H 0.118 0.882 27 H 0.189 0.811 28 H 0.432 0.568 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.109 0.891 32 H 0.287 0.713 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.228 5.903 -1.939 13.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.168 5.168 3 N -0.073 5.073 4 N -0.117 5.117 5 C -0.274 4.274 6 C 0.063 3.937 7 N -0.271 5.271 8 C 0.367 3.633 9 O -0.416 6.416 10 C -0.136 4.136 11 C -0.215 4.215 12 C -0.110 4.110 13 C -0.231 4.231 14 C 0.065 3.935 15 C -0.524 4.524 16 H 0.102 0.898 17 C -0.182 4.182 18 N -0.448 5.448 19 Si 0.799 3.201 20 H -0.175 1.175 21 H -0.196 1.196 22 H -0.191 1.191 23 C -0.145 4.145 24 H 0.126 0.874 25 H 0.134 0.866 26 H 0.137 0.863 27 H 0.206 0.794 28 H 0.274 0.726 29 H 0.161 0.839 30 H 0.160 0.840 31 H 0.127 0.873 32 H 0.098 0.902 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.237 7.708 -1.792 13.744 hybrid contribution 0.464 -1.670 0.058 1.734 sum -10.773 6.039 -1.734 12.471 Atomic orbital electron populations 1.22650 0.69983 1.07557 1.06498 1.50808 1.09804 1.02644 1.53585 1.81857 0.93759 1.05128 1.26587 1.74158 1.13822 1.11872 1.11897 1.23459 0.97737 0.90472 1.15753 1.18707 0.91277 0.82224 1.01531 1.42649 1.12239 0.99715 1.72524 1.18887 0.84522 0.85889 0.74012 1.90662 1.18900 1.83382 1.48648 1.19353 0.95766 0.89029 1.09429 1.20876 0.92413 0.97211 1.10960 1.20938 0.99319 0.92164 0.98584 1.21467 0.92604 0.98975 1.10100 1.17914 0.93289 0.92363 0.89902 1.19908 0.96305 0.98686 1.37477 0.89759 1.26773 1.02369 0.97190 0.91902 1.69857 1.24589 1.27405 1.22972 0.85212 0.77013 0.78634 0.79268 1.17484 1.19609 1.19066 1.21475 0.98501 0.92415 1.02082 0.87378 0.86641 0.86337 0.79447 0.72578 0.83888 0.83962 0.87305 0.90190 0.87872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 11.40 127.77 1.46 2.22 16 2 N -0.37 -9.10 4.09 -365.88 -1.50 -10.59 16 3 N -0.09 -2.95 13.81 37.02 0.51 -2.44 16 4 N -0.25 -9.04 12.32 -58.25 -0.72 -9.76 16 5 C -0.11 -4.14 10.76 83.92 0.90 -3.23 16 6 C 0.29 8.80 7.75 130.94 1.02 9.81 16 7 N -0.62 -17.21 5.37 -310.62 -1.67 -18.88 16 8 C 0.58 22.20 7.74 86.79 0.67 22.87 16 9 O -0.54 -24.99 13.50 -3.91 -0.05 -25.04 16 10 C -0.13 -5.46 5.87 -20.14 -0.12 -5.58 16 11 C -0.20 -6.35 9.55 22.70 0.22 -6.14 16 12 C -0.09 -3.13 10.01 22.18 0.22 -2.90 16 13 C -0.21 -8.91 9.78 22.77 0.22 -8.69 16 14 C 0.07 3.39 5.57 -21.32 -0.12 3.27 16 15 C -0.49 -25.39 9.05 23.47 0.21 -25.17 16 16 H 0.08 4.10 7.91 -2.91 -0.02 4.08 16 17 C 0.03 1.65 5.14 85.25 0.44 2.08 16 18 N -0.82 -43.62 10.96 21.82 0.24 -43.38 16 19 Si 0.98 37.97 29.60 68.60 2.03 40.00 16 20 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 21 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 22 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 23 C -0.12 -6.29 8.24 23.01 0.19 -6.10 16 24 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.12 0.62 7.64 -2.39 -0.02 0.60 16 26 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.19 7.62 5.83 -2.91 -0.02 7.60 16 28 H 0.43 8.05 6.17 -92.71 -0.57 7.48 16 29 H 0.14 3.05 6.38 -2.91 -0.02 3.03 16 30 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 31 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 32 H 0.29 14.08 8.30 -92.71 -0.77 13.31 16 33 H 0.10 5.88 5.74 -2.91 -0.02 5.86 16 Total: -1.00 -68.61 292.15 4.76 -63.85 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.60 Total: 23.79 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 5.31 Total: -17.56 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -3.13 Total: -85.05 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.05 Total: -25.04 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Total: -68.61 4.76 -63.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752951391.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.092 kcal (2) G-P(sol) polarization free energy of solvation -68.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds