Wall clock time and date at job start Mon Mar 30 2020 01:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38159 * 120.50080 * 2 1 4 4 N 1.31802 * 120.89816 * 179.97438 * 3 2 1 5 5 C 1.31839 * 122.05085 * 359.97438 * 4 3 2 6 6 C 1.38112 * 120.89716 * 0.03139 * 5 4 3 7 7 C 1.39816 * 120.50078 * 179.97438 * 2 1 3 8 8 C 1.48106 * 120.92407 * 0.04964 * 7 2 1 9 9 O 1.21547 * 120.00120 * 353.89792 * 8 7 2 10 10 N 1.34774 * 120.00002 * 173.89497 * 8 7 2 11 11 C 1.40504 * 120.00281 * 179.97438 * 10 8 7 12 12 C 1.40673 * 126.08047 * 0.03107 * 11 10 8 13 13 N 1.30907 * 108.38051 * 179.97438 * 12 11 10 14 14 N 1.40057 * 108.41750 * 359.97438 * 13 12 11 15 15 C 1.37322 * 126.06846 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99764 * 179.97438 * 15 14 13 17 17 C 1.38984 * 119.99850 * 359.97438 * 15 14 13 18 18 N 1.31295 * 119.99979 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00030 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47431 * 59.99885 * 19 17 15 21 21 H 1.48504 * 109.46969 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46859 * 299.99620 * 19 17 15 23 23 C 1.35703 * 126.08846 * 179.71406 * 11 10 8 24 24 H 1.08999 * 109.47472 * 263.67296 * 1 2 3 25 25 H 1.09003 * 109.47091 * 23.67371 * 1 2 3 26 26 H 1.09004 * 109.46941 * 143.67198 * 1 2 3 27 27 H 1.08001 * 119.55448 * 359.97104 * 3 2 1 28 28 H 1.08004 * 119.54620 * 180.02562 * 5 4 3 29 29 H 1.08005 * 120.49405 * 179.97438 * 6 5 4 30 30 H 0.97002 * 119.99995 * 0.02562 * 10 8 7 31 31 H 1.07993 * 125.81483 * 359.93639 * 12 11 10 32 32 H 0.96997 * 120.00228 * 180.02562 * 18 17 15 33 33 H 1.07995 * 126.25049 * 0.04373 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1904 0.0000 4 7 3.5262 1.1995 0.0005 5 6 4.2335 0.0870 0.0015 6 6 3.6140 -1.1474 0.0015 7 6 2.2166 -1.2047 0.0005 8 6 1.5082 -2.5053 0.0000 9 8 0.2983 -2.5384 0.1110 10 7 2.2052 -3.6522 -0.1236 11 6 1.5332 -4.8862 -0.1235 12 6 0.1441 -5.0731 -0.0037 13 7 -0.1047 -6.3576 -0.0462 14 7 1.1099 -7.0390 -0.1947 15 6 1.2680 -8.4004 -0.2797 16 1 2.2552 -8.8232 -0.3941 17 6 0.1577 -9.2341 -0.2185 18 7 -1.0424 -8.7200 -0.0789 19 14 0.3728 -11.0861 -0.3334 20 1 1.2349 -11.5544 0.7813 21 1 -0.9549 -11.7452 -0.2423 22 1 1.0092 -11.4309 -1.6299 23 6 2.1081 -6.1094 -0.2451 24 1 -0.3634 -0.1132 1.0214 25 1 -0.3633 0.9412 -0.4126 26 1 -0.3633 -0.8280 -0.6088 27 1 1.6691 2.1262 -0.0005 28 1 5.3122 0.1417 0.0023 29 1 4.1998 -2.0547 0.0019 30 1 3.1708 -3.6259 -0.2118 31 1 -0.5917 -4.2903 0.1054 32 1 -1.8173 -9.3018 -0.0358 33 1 3.1630 -6.3108 -0.3586 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771141265.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:20 Heat of formation + Delta-G solvation = 88.217972 kcal Electronic energy + Delta-G solvation = -19592.385536 eV Core-core repulsion = 16427.393888 eV Total energy + Delta-G solvation = -3164.991648 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.73232 -39.69702 -38.35607 -34.56919 -33.37659 -33.32703 -32.00226 -30.27756 -28.11268 -27.16236 -25.23377 -24.26960 -22.36035 -21.25771 -20.52769 -19.49884 -17.97698 -17.29521 -16.53332 -15.56500 -15.35195 -15.20764 -15.08170 -14.96325 -14.06437 -13.93382 -13.46711 -13.42833 -13.15699 -12.92921 -12.64205 -12.31185 -11.72419 -11.59205 -11.45981 -11.28003 -11.00405 -10.59061 -10.26360 -9.95548 -9.84917 -9.22268 -9.10270 -8.99030 -8.86431 -8.12060 -6.77037 -6.60433 -4.27916 0.70390 0.96516 2.86524 3.01867 3.05045 3.06317 3.41098 3.56624 3.82501 3.83411 4.28076 4.38783 4.55156 4.64052 4.75710 4.84855 4.97622 5.01764 5.27404 5.54425 5.62518 5.74169 5.83050 6.02920 6.18919 6.37942 6.39196 6.56101 6.83077 6.88815 7.04083 7.17515 7.77583 7.79889 8.06634 8.20049 8.54478 8.73678 9.31472 9.60597 10.35354 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.049372 B = 0.003668 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.981577 B = 7631.893653 C = 8180.502052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.078 4.078 3 C 0.090 3.910 4 N -0.473 5.473 5 C 0.083 3.917 6 C -0.142 4.142 7 C -0.079 4.079 8 C 0.536 3.464 9 O -0.521 6.521 10 N -0.611 5.611 11 C -0.064 4.064 12 C -0.029 4.029 13 N -0.260 5.260 14 N -0.140 5.140 15 C -0.323 4.323 16 H 0.117 0.883 17 C 0.047 3.953 18 N -0.768 5.768 19 Si 0.936 3.064 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.266 1.266 23 C -0.083 4.083 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.099 0.901 27 H 0.160 0.840 28 H 0.159 0.841 29 H 0.138 0.862 30 H 0.396 0.604 31 H 0.177 0.823 32 H 0.276 0.724 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.125 11.934 -0.323 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.081 4.081 3 C -0.067 4.067 4 N -0.182 5.182 5 C -0.073 4.073 6 C -0.162 4.162 7 C -0.091 4.091 8 C 0.323 3.677 9 O -0.399 6.399 10 N -0.253 5.253 11 C -0.169 4.169 12 C -0.205 4.205 13 N -0.091 5.091 14 N 0.093 4.907 15 C -0.456 4.456 16 H 0.134 0.866 17 C -0.171 4.171 18 N -0.395 5.395 19 Si 0.759 3.241 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.191 1.191 23 C -0.234 4.234 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.118 0.882 27 H 0.177 0.823 28 H 0.176 0.824 29 H 0.156 0.844 30 H 0.230 0.770 31 H 0.194 0.806 32 H 0.087 0.913 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.539 11.703 -0.184 13.407 hybrid contribution 1.082 -0.997 -0.105 1.475 sum 7.621 10.706 -0.289 13.145 Atomic orbital electron populations 1.20999 0.88961 1.03386 1.04060 1.21130 0.98568 0.92356 0.96089 1.22701 0.89742 0.97349 0.96941 1.67522 1.08354 1.31813 1.10484 1.22654 1.00395 0.87304 0.96936 1.22365 0.94043 1.00144 0.99697 1.20366 0.93646 0.94222 1.00826 1.17917 0.87112 0.82950 0.79721 1.90632 1.13314 1.86182 1.49731 1.42380 1.09416 1.04036 1.69473 1.17242 0.92501 0.83225 1.23974 1.24131 0.93646 0.95169 1.07548 1.78268 1.02863 1.02660 1.25349 1.44559 1.02930 1.04854 1.38350 1.19855 0.95922 0.77030 1.52760 0.86579 1.25650 0.94556 1.01470 0.95425 1.70201 0.98261 1.36400 1.34603 0.85880 0.78410 0.80280 0.79505 1.19125 1.20090 1.19120 1.21254 0.94409 0.88070 1.19684 0.90310 0.92150 0.88217 0.82319 0.82367 0.84384 0.76960 0.80618 0.91322 0.83628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 8.84 36.00 0.32 -1.13 16 2 C -0.08 -1.01 5.93 -104.06 -0.62 -1.63 16 3 C 0.09 1.02 10.83 -17.59 -0.19 0.83 16 4 N -0.47 -5.65 10.34 -13.31 -0.14 -5.79 16 5 C 0.08 0.86 11.17 -17.59 -0.20 0.67 16 6 C -0.14 -1.56 9.60 -39.02 -0.37 -1.93 16 7 C -0.08 -1.10 5.91 -104.65 -0.62 -1.72 16 8 C 0.54 9.36 7.70 -12.21 -0.09 9.26 16 9 O -0.52 -10.57 10.68 5.32 0.06 -10.51 16 10 N -0.61 -10.69 5.42 -10.78 -0.06 -10.75 16 11 C -0.06 -1.44 6.90 -83.87 -0.58 -2.02 16 12 C -0.03 -0.76 10.85 -17.03 -0.18 -0.94 16 13 N -0.26 -7.47 10.39 30.80 0.32 -7.15 16 14 N -0.14 -3.78 3.74 -11.41 -0.04 -3.82 16 15 C -0.32 -8.43 10.25 -14.82 -0.15 -8.58 16 16 H 0.12 2.68 7.83 -52.49 -0.41 2.27 16 17 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 18 N -0.77 -21.20 11.81 55.49 0.66 -20.55 16 19 Si 0.94 18.61 29.55 -169.99 -5.02 13.59 16 20 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 21 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 23 C -0.08 -1.91 11.49 -16.38 -0.19 -2.10 16 24 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.06 0.57 8.06 -51.93 -0.42 0.15 16 26 H 0.10 1.49 5.95 -51.93 -0.31 1.18 16 27 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 28 H 0.16 1.14 8.06 -52.48 -0.42 0.71 16 29 H 0.14 1.15 6.58 -52.48 -0.35 0.81 16 30 H 0.40 5.32 7.00 -40.82 -0.29 5.03 16 31 H 0.18 4.45 5.92 -52.49 -0.31 4.14 16 32 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.15 2.77 8.06 -52.49 -0.42 2.35 16 LS Contribution 290.19 15.07 4.37 4.37 Total: -1.00 -32.83 290.19 -5.74 -38.57 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -2.91 Total: 10.25 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -2.97 Total: -8.21 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 0.74 Total: -48.06 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.06 Total: -10.51 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.83 -5.74 -38.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771141265.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.788 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds