Wall clock time and date at job start Mon Mar 30 2020 01:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38159 * 120.50080 * 2 1 4 4 N 1.31802 * 120.89816 * 179.97438 * 3 2 1 5 5 C 1.31839 * 122.05085 * 359.97438 * 4 3 2 6 6 C 1.38112 * 120.89716 * 0.03139 * 5 4 3 7 7 C 1.39816 * 120.50078 * 179.97438 * 2 1 3 8 8 C 1.48106 * 120.92407 * 0.04964 * 7 2 1 9 9 O 1.21547 * 120.00120 * 353.89792 * 8 7 2 10 10 N 1.34774 * 120.00002 * 173.89497 * 8 7 2 11 11 C 1.40504 * 120.00281 * 179.97438 * 10 8 7 12 12 C 1.40673 * 126.08047 * 0.03107 * 11 10 8 13 13 N 1.30907 * 108.38051 * 179.97438 * 12 11 10 14 14 N 1.40057 * 108.41750 * 359.97438 * 13 12 11 15 15 C 1.37322 * 126.06846 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99764 * 179.97438 * 15 14 13 17 17 C 1.38984 * 119.99850 * 359.97438 * 15 14 13 18 18 N 1.31295 * 119.99979 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00030 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47431 * 59.99885 * 19 17 15 21 21 H 1.48504 * 109.46969 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46859 * 299.99620 * 19 17 15 23 23 C 1.35703 * 126.08846 * 179.71406 * 11 10 8 24 24 H 1.08999 * 109.47472 * 263.67296 * 1 2 3 25 25 H 1.09003 * 109.47091 * 23.67371 * 1 2 3 26 26 H 1.09004 * 109.46941 * 143.67198 * 1 2 3 27 27 H 1.08001 * 119.55448 * 359.97104 * 3 2 1 28 28 H 1.08004 * 119.54620 * 180.02562 * 5 4 3 29 29 H 1.08005 * 120.49405 * 179.97438 * 6 5 4 30 30 H 0.97002 * 119.99995 * 0.02562 * 10 8 7 31 31 H 1.07993 * 125.81483 * 359.93639 * 12 11 10 32 32 H 0.96997 * 120.00228 * 180.02562 * 18 17 15 33 33 H 1.07995 * 126.25049 * 0.04373 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1904 0.0000 4 7 3.5262 1.1995 0.0005 5 6 4.2335 0.0870 0.0015 6 6 3.6140 -1.1474 0.0015 7 6 2.2166 -1.2047 0.0005 8 6 1.5082 -2.5053 0.0000 9 8 0.2983 -2.5384 0.1110 10 7 2.2052 -3.6522 -0.1236 11 6 1.5332 -4.8862 -0.1235 12 6 0.1441 -5.0731 -0.0037 13 7 -0.1047 -6.3576 -0.0462 14 7 1.1099 -7.0390 -0.1947 15 6 1.2680 -8.4004 -0.2797 16 1 2.2552 -8.8232 -0.3941 17 6 0.1577 -9.2341 -0.2185 18 7 -1.0424 -8.7200 -0.0789 19 14 0.3728 -11.0861 -0.3334 20 1 1.2349 -11.5544 0.7813 21 1 -0.9549 -11.7452 -0.2423 22 1 1.0092 -11.4309 -1.6299 23 6 2.1081 -6.1094 -0.2451 24 1 -0.3634 -0.1132 1.0214 25 1 -0.3633 0.9412 -0.4126 26 1 -0.3633 -0.8280 -0.6088 27 1 1.6691 2.1262 -0.0005 28 1 5.3122 0.1417 0.0023 29 1 4.1998 -2.0547 0.0019 30 1 3.1708 -3.6259 -0.2118 31 1 -0.5917 -4.2903 0.1054 32 1 -1.8173 -9.3018 -0.0358 33 1 3.1630 -6.3108 -0.3586 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771141265.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:20 Heat of formation + Delta-G solvation = 65.502369 kcal Electronic energy + Delta-G solvation = -19593.370558 eV Core-core repulsion = 16427.393888 eV Total energy + Delta-G solvation = -3165.976670 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.99652 -41.27057 -39.77737 -36.13872 -35.12282 -34.36830 -33.06781 -32.19959 -29.75129 -28.28969 -26.93447 -25.51827 -23.37990 -22.95478 -21.99706 -21.25731 -19.50846 -18.75609 -17.64180 -17.42505 -16.65221 -16.46801 -16.28996 -16.14242 -15.66251 -15.33705 -14.90889 -14.72995 -14.62470 -14.28521 -13.62600 -13.48872 -13.47558 -13.17526 -12.87969 -12.83705 -12.48311 -12.13880 -11.87473 -11.10793 -11.02828 -10.85410 -10.82587 -10.28068 -10.11703 -9.91294 -8.56012 -8.47628 -6.25390 -0.32529 0.10582 1.26951 1.40121 1.56585 1.63158 1.90564 1.97242 2.22173 2.48219 2.86861 2.87179 3.08786 3.51004 3.62010 3.79842 3.85022 4.00531 4.41173 4.43034 4.57215 4.65184 4.78345 4.80913 4.86537 4.98789 5.01596 5.14502 5.28142 5.34456 5.50609 5.66000 5.94202 6.28590 6.63887 6.72133 6.91579 7.26590 7.44440 7.65923 8.51468 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.049372 B = 0.003668 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.981577 B = 7631.893653 C = 8180.502052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C 0.094 3.906 4 N -0.484 5.484 5 C 0.088 3.912 6 C -0.132 4.132 7 C -0.101 4.101 8 C 0.536 3.464 9 O -0.554 6.554 10 N -0.605 5.605 11 C -0.048 4.048 12 C -0.056 4.056 13 N -0.310 5.310 14 N -0.166 5.166 15 C -0.355 4.355 16 H 0.142 0.858 17 C -0.006 4.006 18 N -0.824 5.824 19 Si 1.020 2.980 20 H -0.253 1.253 21 H -0.279 1.279 22 H -0.253 1.253 23 C -0.078 4.078 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.186 0.814 28 H 0.196 0.804 29 H 0.166 0.834 30 H 0.418 0.582 31 H 0.170 0.830 32 H 0.277 0.723 33 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.328 12.604 -0.547 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.063 4.063 4 N -0.193 5.193 5 C -0.068 4.068 6 C -0.152 4.152 7 C -0.112 4.112 8 C 0.325 3.675 9 O -0.434 6.434 10 N -0.250 5.250 11 C -0.155 4.155 12 C -0.232 4.232 13 N -0.142 5.142 14 N 0.065 4.935 15 C -0.486 4.486 16 H 0.160 0.840 17 C -0.218 4.218 18 N -0.452 5.452 19 Si 0.838 3.162 20 H -0.177 1.177 21 H -0.204 1.204 22 H -0.177 1.177 23 C -0.228 4.228 24 H 0.089 0.911 25 H 0.108 0.892 26 H 0.087 0.913 27 H 0.203 0.797 28 H 0.213 0.787 29 H 0.184 0.816 30 H 0.257 0.743 31 H 0.186 0.814 32 H 0.086 0.914 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 9.796 12.418 -0.411 15.822 hybrid contribution 0.178 -0.957 -0.032 0.974 sum 9.973 11.460 -0.443 15.199 Atomic orbital electron populations 1.20900 0.89272 1.03661 1.03136 1.21260 0.98614 0.92808 0.96708 1.23055 0.89765 0.97641 0.95880 1.67622 1.08541 1.32641 1.10520 1.23266 1.02025 0.86418 0.95114 1.22654 0.92652 1.01830 0.98113 1.20177 0.95044 0.92301 1.03678 1.18589 0.86912 0.84055 0.77959 1.90631 1.15195 1.86884 1.50666 1.42266 1.10435 1.02347 1.69948 1.17298 0.91424 0.85220 1.21519 1.24197 0.95491 0.94549 1.08915 1.78160 1.05049 1.03941 1.27082 1.44844 1.03122 1.05759 1.39780 1.20613 0.97457 0.77166 1.53391 0.84036 1.26883 0.93772 1.07003 0.94113 1.70388 0.99451 1.38488 1.36859 0.84646 0.78305 0.72970 0.80254 1.17706 1.20375 1.17696 1.22006 0.95814 0.87402 1.17621 0.91113 0.89176 0.91343 0.79684 0.78744 0.81624 0.74345 0.81365 0.91369 0.79288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.79 8.84 71.23 0.63 -2.16 16 2 C -0.09 -2.22 5.93 -19.50 -0.12 -2.34 16 3 C 0.09 1.88 10.83 84.68 0.92 2.79 16 4 N -0.48 -9.94 10.34 -196.01 -2.03 -11.96 16 5 C 0.09 1.47 11.17 84.66 0.95 2.41 16 6 C -0.13 -2.46 9.60 22.63 0.22 -2.24 16 7 C -0.10 -2.65 5.91 -19.88 -0.12 -2.77 16 8 C 0.54 18.63 7.70 86.86 0.67 19.29 16 9 O -0.55 -23.40 10.68 -3.86 -0.04 -23.44 16 10 N -0.61 -20.46 5.42 -306.30 -1.66 -22.12 16 11 C -0.05 -2.19 6.90 37.76 0.26 -1.93 16 12 C -0.06 -3.04 10.85 85.43 0.93 -2.11 16 13 N -0.31 -18.62 10.39 -56.46 -0.59 -19.20 16 14 N -0.17 -9.14 3.74 -190.00 -0.71 -9.85 16 15 C -0.36 -18.59 10.25 84.01 0.86 -17.73 16 16 H 0.14 6.35 7.83 -2.91 -0.02 6.33 16 17 C -0.01 -0.31 5.50 84.95 0.47 0.16 16 18 N -0.82 -47.35 11.81 21.66 0.26 -47.10 16 19 Si 1.02 38.09 29.55 68.60 2.03 40.12 16 20 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16 21 H -0.28 -10.37 7.11 99.48 0.71 -9.67 16 22 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 23 C -0.08 -3.53 11.49 83.38 0.96 -2.57 16 24 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.09 1.60 8.06 -2.39 -0.02 1.58 16 26 H 0.07 2.15 5.95 -2.38 -0.01 2.13 16 27 H 0.19 2.56 8.06 -2.91 -0.02 2.54 16 28 H 0.20 1.77 8.06 -2.91 -0.02 1.75 16 29 H 0.17 2.04 6.58 -2.91 -0.02 2.02 16 30 H 0.42 10.07 7.00 -92.71 -0.65 9.42 16 31 H 0.17 9.13 5.92 -2.91 -0.02 9.11 16 32 H 0.28 14.65 8.31 -92.71 -0.77 13.88 16 33 H 0.19 6.61 8.06 -2.91 -0.02 6.58 16 Total: -1.00 -75.86 290.19 4.40 -71.47 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.52 Total: 31.27 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: 6.62 Total: -9.18 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -4.73 Total: -110.23 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.04 Total: -23.44 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Total: -75.86 4.40 -71.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771141265.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.968 kcal (2) G-P(sol) polarization free energy of solvation -75.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds