Wall clock time and date at job start Mon Mar 30 2020 00:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86804 * 119.99663 * 2 1 4 4 H 1.48499 * 109.47055 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47292 * 300.00369 * 3 2 1 6 6 H 1.48502 * 109.47209 * 60.00198 * 3 2 1 7 7 C 1.40046 * 120.00514 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00321 * 179.97438 * 7 2 1 9 9 C 1.46373 * 119.99700 * 359.97438 * 7 2 1 10 10 O 1.21685 * 120.00180 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00162 * 180.02562 * 9 7 2 12 12 C 1.46503 * 120.00299 * 179.97438 * 11 9 7 13 13 C 1.50700 * 109.47125 * 180.02562 * 12 11 9 14 14 C 1.38801 * 120.35544 * 90.00254 * 13 12 11 15 15 C 1.38405 * 118.48620 * 179.97438 * 14 13 12 16 16 C 1.38935 * 119.10802 * 359.97438 * 15 14 13 17 17 N 1.39835 * 119.68679 * 179.97438 * 16 15 14 18 18 C 1.37179 * 126.48660 * 185.27994 * 17 16 15 19 19 C 1.34612 * 106.83101 * 180.12450 * 18 17 16 20 20 N 1.34154 * 108.21432 * 359.61500 * 19 18 17 21 21 C 1.30483 * 109.37406 * 0.24541 * 20 19 18 22 22 N 1.32298 * 120.62410 * 0.25679 * 16 15 14 23 23 C 1.31900 * 121.64833 * 359.47977 * 22 16 15 24 24 H 0.96992 * 120.00700 * 359.97438 * 1 2 3 25 25 H 0.97006 * 119.99686 * 0.02562 * 11 9 7 26 26 H 1.08999 * 109.46981 * 60.00320 * 12 11 9 27 27 H 1.08995 * 109.46905 * 300.00329 * 12 11 9 28 28 H 1.08003 * 120.75652 * 359.95373 * 14 13 12 29 29 H 1.08001 * 120.44687 * 179.97438 * 15 14 13 30 30 H 1.08002 * 126.58310 * 0.02562 * 18 17 16 31 31 H 1.08002 * 125.89603 * 179.88784 * 19 18 17 32 32 H 1.07992 * 125.72374 * 180.02562 * 21 20 19 33 33 H 1.08005 * 119.57995 * 180.26359 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7006 1.3465 -0.0006 5 1 1.8818 2.3965 -1.2124 6 1 1.8818 2.3965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2752 -2.4804 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9491 -3.6476 -0.0005 12 6 1.2167 -4.9164 0.0000 13 6 2.1960 -6.0618 0.0005 14 6 2.6518 -6.5944 1.1985 15 6 3.5504 -7.6462 1.1538 16 6 3.9629 -8.1307 -0.0812 17 7 4.8708 -9.1926 -0.1405 18 6 5.4464 -9.7115 -1.2724 19 6 6.2485 -10.7172 -0.8759 20 7 6.1759 -10.8094 0.4605 21 6 5.3545 -9.9022 0.9130 22 7 3.5091 -7.5933 -1.2018 23 6 2.6485 -6.5937 -1.1910 24 1 -0.4851 0.8399 0.0004 25 1 2.9192 -3.6476 -0.0002 26 1 0.5897 -4.9744 -0.8897 27 1 0.5903 -4.9739 0.8902 28 1 2.3133 -6.1970 2.1440 29 1 3.9259 -8.0843 2.0667 30 1 5.2855 -9.3782 -2.2871 31 1 6.8503 -11.3394 -1.5217 32 1 5.1016 -9.7417 1.9506 33 1 2.2967 -6.1831 -2.1259 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772075997.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:43 Heat of formation + Delta-G solvation = 67.670643 kcal Electronic energy + Delta-G solvation = -19049.375027 eV Core-core repulsion = 15883.492380 eV Total energy + Delta-G solvation = -3165.882647 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.54505 -40.34613 -37.41856 -34.99458 -33.44080 -32.71205 -32.26270 -30.38190 -29.55904 -26.98754 -25.31931 -24.18821 -22.89366 -21.19808 -21.02464 -19.81498 -19.01546 -17.53611 -16.71104 -15.93147 -15.60561 -15.41950 -15.28417 -14.45512 -14.22062 -14.08811 -14.03226 -13.69881 -13.50313 -13.31991 -13.29530 -12.42121 -11.82064 -11.50026 -11.23769 -11.00918 -10.89140 -10.56074 -10.41298 -10.27551 -10.15601 -9.88105 -9.00355 -8.94269 -8.67014 -7.71573 -7.68985 -6.27733 -4.73778 0.44916 0.93772 1.99645 2.21898 2.86488 3.07740 3.16501 3.20631 3.51308 4.01970 4.05220 4.28265 4.40328 4.48655 4.63482 4.65899 4.76782 4.95920 5.10172 5.20210 5.27781 5.36676 5.62254 5.64221 5.81831 5.97005 6.11597 6.28721 6.34945 6.44901 6.88467 7.35323 7.52046 7.73890 7.77793 7.92390 8.22076 8.93831 9.38161 10.49001 10.66934 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.039298 B = 0.003131 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.340273 B = 8941.811467 C = 9191.729646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.579 6.579 11 N -0.764 5.764 12 C 0.174 3.826 13 C -0.142 4.142 14 C -0.034 4.034 15 C -0.178 4.178 16 C 0.332 3.668 17 N -0.407 5.407 18 C -0.024 4.024 19 C -0.035 4.035 20 N -0.482 5.482 21 C 0.191 3.809 22 N -0.498 5.498 23 C 0.147 3.853 24 H 0.269 0.731 25 H 0.381 0.619 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.149 0.851 29 H 0.142 0.858 30 H 0.181 0.819 31 H 0.175 0.825 32 H 0.211 0.789 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.531 -15.103 0.722 17.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.087 0.913 9 C 0.359 3.641 10 O -0.461 6.461 11 N -0.421 5.421 12 C 0.049 3.951 13 C -0.145 4.145 14 C -0.060 4.060 15 C -0.200 4.200 16 C 0.104 3.896 17 N -0.089 5.089 18 C -0.154 4.154 19 C -0.180 4.180 20 N -0.199 5.199 21 C -0.091 4.091 22 N -0.209 5.209 23 C -0.011 4.011 24 H 0.080 0.920 25 H 0.212 0.788 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.167 0.833 29 H 0.160 0.840 30 H 0.198 0.802 31 H 0.192 0.808 32 H 0.227 0.773 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 8.113 -15.857 0.379 17.815 hybrid contribution 0.227 1.665 0.236 1.697 sum 8.340 -14.192 0.615 16.472 Atomic orbital electron populations 1.70013 1.07071 1.27337 1.35124 1.25711 0.94639 1.00358 0.92560 0.86304 0.80477 0.81638 0.78289 1.18765 1.20100 1.20110 1.20898 0.93634 0.89206 1.54316 0.91345 1.18269 0.87218 0.82254 0.76398 1.90612 1.14041 1.86574 1.54915 1.46266 1.08605 1.04062 1.83152 1.19739 0.91619 0.81506 1.02275 1.21320 1.00174 0.99279 0.93730 1.21522 0.92702 0.92478 0.99326 1.21533 1.01709 0.99997 0.96801 1.18184 0.91586 0.89163 0.90650 1.43132 1.32328 1.24623 1.08804 1.22960 1.00460 0.99366 0.92604 1.22381 1.03520 1.00435 0.91668 1.70321 1.17731 1.20979 1.10843 1.25302 0.97284 0.92110 0.94365 1.67011 1.12751 1.12009 1.29116 1.22609 0.90322 0.89496 0.98694 0.92039 0.78763 0.91759 0.91870 0.83299 0.84020 0.80151 0.80766 0.77281 0.81275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.34 11.83 55.55 0.66 -21.68 16 2 C 0.09 2.36 5.50 -17.37 -0.10 2.27 16 3 Si 0.91 19.55 29.56 -169.99 -5.02 14.52 16 4 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.54 -14.76 9.54 -35.63 -0.34 -15.10 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 9 C 0.55 14.93 7.75 -12.99 -0.10 14.83 16 10 O -0.58 -17.91 15.02 5.20 0.08 -17.83 16 11 N -0.76 -15.62 5.54 -62.90 -0.35 -15.97 16 12 C 0.17 2.91 5.82 -5.19 -0.03 2.88 16 13 C -0.14 -1.83 5.27 -104.46 -0.55 -2.38 16 14 C -0.03 -0.37 9.85 -39.31 -0.39 -0.76 16 15 C -0.18 -1.78 9.50 -39.26 -0.37 -2.16 16 16 C 0.33 3.98 7.50 -154.36 -1.16 2.82 16 17 N -0.41 -4.70 2.98 -63.83 -0.19 -4.89 16 18 C -0.02 -0.26 11.18 -16.44 -0.18 -0.45 16 19 C -0.04 -0.38 11.85 -17.82 -0.21 -0.59 16 20 N -0.48 -5.88 11.24 -14.47 -0.16 -6.05 16 21 C 0.19 2.00 11.89 -89.58 -1.07 0.93 16 22 N -0.50 -6.47 9.90 -12.29 -0.12 -6.59 16 23 C 0.15 1.84 10.85 -17.57 -0.19 1.65 16 24 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 25 H 0.38 6.97 8.44 -40.82 -0.34 6.63 16 26 H 0.06 1.12 8.09 -51.93 -0.42 0.70 16 27 H 0.06 1.10 8.09 -51.93 -0.42 0.68 16 28 H 0.15 1.40 8.06 -52.48 -0.42 0.98 16 29 H 0.14 0.97 6.78 -52.49 -0.36 0.62 16 30 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.21 1.37 7.07 -52.49 -0.37 1.00 16 33 H 0.17 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 300.74 15.07 4.53 4.53 Total: -1.00 -35.09 300.74 -8.42 -43.51 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -3.15 Total: 6.50 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -4.69 Total: 3.95 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.17 Total: -55.18 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.08 Total: -17.83 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -35.09 -8.42 -43.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772075997.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.178 kcal (2) G-P(sol) polarization free energy of solvation -35.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds