Wall clock time and date at job start Mon Mar 30 2020 00:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86804 * 119.99663 * 2 1 4 4 H 1.48499 * 109.47055 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47292 * 300.00369 * 3 2 1 6 6 H 1.48502 * 109.47209 * 60.00198 * 3 2 1 7 7 C 1.40046 * 120.00514 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00321 * 179.97438 * 7 2 1 9 9 C 1.46373 * 119.99700 * 359.97438 * 7 2 1 10 10 O 1.21685 * 120.00180 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00162 * 180.02562 * 9 7 2 12 12 C 1.46503 * 120.00299 * 179.97438 * 11 9 7 13 13 C 1.50700 * 109.47125 * 180.02562 * 12 11 9 14 14 C 1.38801 * 120.35544 * 90.00254 * 13 12 11 15 15 C 1.38405 * 118.48620 * 179.97438 * 14 13 12 16 16 C 1.38935 * 119.10802 * 359.97438 * 15 14 13 17 17 N 1.39835 * 119.68679 * 179.97438 * 16 15 14 18 18 C 1.37179 * 126.48660 * 185.27994 * 17 16 15 19 19 C 1.34612 * 106.83101 * 180.12450 * 18 17 16 20 20 N 1.34154 * 108.21432 * 359.61500 * 19 18 17 21 21 C 1.30483 * 109.37406 * 0.24541 * 20 19 18 22 22 N 1.32298 * 120.62410 * 0.25679 * 16 15 14 23 23 C 1.31900 * 121.64833 * 359.47977 * 22 16 15 24 24 H 0.96992 * 120.00700 * 359.97438 * 1 2 3 25 25 H 0.97006 * 119.99686 * 0.02562 * 11 9 7 26 26 H 1.08999 * 109.46981 * 60.00320 * 12 11 9 27 27 H 1.08995 * 109.46905 * 300.00329 * 12 11 9 28 28 H 1.08003 * 120.75652 * 359.95373 * 14 13 12 29 29 H 1.08001 * 120.44687 * 179.97438 * 15 14 13 30 30 H 1.08002 * 126.58310 * 0.02562 * 18 17 16 31 31 H 1.08002 * 125.89603 * 179.88784 * 19 18 17 32 32 H 1.07992 * 125.72374 * 180.02562 * 21 20 19 33 33 H 1.08005 * 119.57995 * 180.26359 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7006 1.3465 -0.0006 5 1 1.8818 2.3965 -1.2124 6 1 1.8818 2.3965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2752 -2.4804 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9491 -3.6476 -0.0005 12 6 1.2167 -4.9164 0.0000 13 6 2.1960 -6.0618 0.0005 14 6 2.6518 -6.5944 1.1985 15 6 3.5504 -7.6462 1.1538 16 6 3.9629 -8.1307 -0.0812 17 7 4.8708 -9.1926 -0.1405 18 6 5.4464 -9.7115 -1.2724 19 6 6.2485 -10.7172 -0.8759 20 7 6.1759 -10.8094 0.4605 21 6 5.3545 -9.9022 0.9130 22 7 3.5091 -7.5933 -1.2018 23 6 2.6485 -6.5937 -1.1910 24 1 -0.4851 0.8399 0.0004 25 1 2.9192 -3.6476 -0.0002 26 1 0.5897 -4.9744 -0.8897 27 1 0.5903 -4.9739 0.8902 28 1 2.3133 -6.1970 2.1440 29 1 3.9259 -8.0843 2.0667 30 1 5.2855 -9.3782 -2.2871 31 1 6.8503 -11.3394 -1.5217 32 1 5.1016 -9.7417 1.9506 33 1 2.2967 -6.1831 -2.1259 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772075997.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:43 Heat of formation + Delta-G solvation = 44.548116 kcal Electronic energy + Delta-G solvation = -19050.377695 eV Core-core repulsion = 15883.492380 eV Total energy + Delta-G solvation = -3166.885315 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.37091 -41.29707 -39.32134 -36.26112 -34.81512 -34.37366 -33.59020 -31.56030 -30.43144 -28.73353 -26.76363 -25.07806 -23.99002 -22.09998 -21.91211 -21.67010 -19.84401 -19.38113 -17.67401 -17.50571 -16.82350 -16.68246 -16.24925 -16.02260 -15.54960 -15.22460 -14.90694 -14.82533 -14.75115 -14.45951 -14.17662 -14.12528 -13.40444 -13.14324 -12.83013 -12.71429 -12.57570 -11.98534 -11.81821 -11.25697 -11.05974 -10.95109 -10.82674 -10.03712 -9.76281 -9.51589 -9.46936 -8.29284 -6.85458 -0.46817 0.05712 1.14196 1.38457 1.40616 1.41895 1.58827 2.05252 2.24767 2.47078 2.57256 3.14128 3.28959 3.50869 3.59277 3.63894 3.67961 3.84734 3.87006 4.16758 4.43512 4.46480 4.55841 4.69029 4.77172 4.80846 5.04096 5.22822 5.32841 5.35033 5.64685 5.86643 6.06586 6.17858 6.24987 6.62797 6.87492 6.91900 7.51026 8.47886 8.66656 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.039298 B = 0.003131 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.340273 B = 8941.811467 C = 9191.729646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.030 3.970 3 Si 0.995 3.005 4 H -0.248 1.248 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.571 4.571 8 H 0.086 0.914 9 C 0.541 3.459 10 O -0.629 6.629 11 N -0.750 5.750 12 C 0.180 3.820 13 C -0.150 4.150 14 C -0.027 4.027 15 C -0.165 4.165 16 C 0.326 3.674 17 N -0.416 5.416 18 C -0.041 4.041 19 C -0.039 4.039 20 N -0.512 5.512 21 C 0.197 3.803 22 N -0.515 5.515 23 C 0.144 3.856 24 H 0.275 0.725 25 H 0.394 0.606 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.167 0.833 29 H 0.181 0.819 30 H 0.186 0.814 31 H 0.195 0.805 32 H 0.247 0.753 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.533 -15.384 1.743 18.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.185 4.185 3 Si 0.815 3.185 4 H -0.171 1.171 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.608 4.608 8 H 0.104 0.896 9 C 0.345 3.655 10 O -0.516 6.516 11 N -0.405 5.405 12 C 0.056 3.944 13 C -0.153 4.153 14 C -0.053 4.053 15 C -0.187 4.187 16 C 0.098 3.902 17 N -0.098 5.098 18 C -0.171 4.171 19 C -0.183 4.183 20 N -0.230 5.230 21 C -0.084 4.084 22 N -0.227 5.227 23 C -0.013 4.013 24 H 0.085 0.915 25 H 0.227 0.773 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.185 0.815 29 H 0.198 0.802 30 H 0.204 0.796 31 H 0.212 0.788 32 H 0.263 0.737 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 10.171 -16.199 1.389 19.177 hybrid contribution -0.352 1.586 -0.070 1.626 sum 9.818 -14.613 1.318 17.654 Atomic orbital electron populations 1.70169 1.09429 1.28921 1.36499 1.26922 0.95495 1.04848 0.91267 0.85002 0.79335 0.75654 0.78500 1.17143 1.19501 1.19358 1.21437 0.94683 0.90077 1.54597 0.89594 1.18552 0.86781 0.84155 0.76031 1.90568 1.16116 1.87816 1.57145 1.45859 1.09160 1.04087 1.81381 1.19672 0.92214 0.81198 1.01343 1.20900 1.00596 0.98786 0.95035 1.21725 0.92182 0.92296 0.99132 1.21854 1.00410 0.98933 0.97479 1.18508 0.91438 0.89140 0.91160 1.43270 1.32486 1.24747 1.09268 1.23181 1.00985 0.99840 0.93077 1.22777 1.03398 1.00438 0.91685 1.70347 1.18976 1.22147 1.11491 1.26080 0.95956 0.90901 0.95510 1.67002 1.13229 1.12347 1.30125 1.22625 0.90329 0.89551 0.98835 0.91534 0.77309 0.92987 0.92588 0.81540 0.80217 0.79645 0.78817 0.73715 0.80963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.93 11.83 21.83 0.26 -48.67 16 2 C 0.03 1.62 5.50 85.30 0.47 2.09 16 3 Si 1.00 39.77 29.56 68.60 2.03 41.80 16 4 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 5 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 6 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 7 C -0.57 -31.15 9.54 24.83 0.24 -30.91 16 8 H 0.09 4.21 7.85 -2.91 -0.02 4.19 16 9 C 0.54 29.75 7.75 86.36 0.67 30.42 16 10 O -0.63 -40.39 15.02 -4.30 -0.06 -40.46 16 11 N -0.75 -30.80 5.54 -471.15 -2.61 -33.41 16 12 C 0.18 6.09 5.82 85.63 0.50 6.59 16 13 C -0.15 -3.72 5.27 -19.76 -0.10 -3.82 16 14 C -0.03 -0.52 9.85 22.44 0.22 -0.30 16 15 C -0.17 -2.74 9.50 22.48 0.21 -2.53 16 16 C 0.33 7.06 7.50 132.76 1.00 8.06 16 17 N -0.42 -8.68 2.98 -355.84 -1.06 -9.74 16 18 C -0.04 -0.86 11.18 83.03 0.93 0.06 16 19 C -0.04 -0.79 11.85 83.51 0.99 0.20 16 20 N -0.51 -11.49 11.24 -199.69 -2.25 -13.74 16 21 C 0.20 3.55 11.89 179.99 2.14 5.69 16 22 N -0.52 -12.80 9.90 -192.80 -1.91 -14.71 16 23 C 0.14 3.53 10.85 84.65 0.92 4.45 16 24 H 0.27 14.80 8.29 -92.71 -0.77 14.03 16 25 H 0.39 14.15 8.44 -92.70 -0.78 13.36 16 26 H 0.05 1.88 8.09 -2.39 -0.02 1.86 16 27 H 0.06 1.98 8.09 -2.39 -0.02 1.96 16 28 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 29 H 0.18 1.55 6.78 -2.91 -0.02 1.53 16 30 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16 31 H 0.19 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.25 2.16 7.07 -2.91 -0.02 2.13 16 33 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -77.88 300.74 2.94 -74.94 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.37 Total: 23.99 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: 8.18 Total: 20.01 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -7.57 Total: -120.27 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -0.06 Total: -40.46 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -77.88 2.94 -74.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772075997.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.486 kcal (2) G-P(sol) polarization free energy of solvation -77.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds