Wall clock time and date at job start Mon Mar 30 2020 00:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86802 * 119.99495 * 2 1 4 4 H 1.48503 * 109.46863 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47136 * 299.99920 * 3 2 1 6 6 H 1.48498 * 109.47150 * 60.00175 * 3 2 1 7 7 C 1.40127 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99755 * 180.02562 * 7 2 1 9 9 C 1.46115 * 120.00047 * 359.97438 * 7 2 1 10 10 O 1.21757 * 119.99817 * 0.02562 * 9 7 2 11 11 N 1.34772 * 120.00003 * 180.02562 * 9 7 2 12 12 C 1.39672 * 120.00104 * 180.02562 * 11 9 7 13 13 C 1.40514 * 125.98848 * 359.97438 * 12 11 9 14 14 C 1.35178 * 107.87995 * 180.02562 * 13 12 11 15 15 N 1.35061 * 107.89923 * 0.02562 * 14 13 12 16 16 C 1.46501 * 125.96806 * 179.97438 * 15 14 13 17 17 C 1.50707 * 109.46945 * 125.00492 * 16 15 14 18 18 C 1.38227 * 119.62024 * 124.97880 * 17 16 15 19 19 C 1.38627 * 119.15702 * 179.78495 * 18 17 16 20 20 C 1.38669 * 118.42389 * 0.47826 * 19 18 17 21 21 C 1.38186 * 119.16143 * 359.49762 * 20 19 18 22 22 N 1.31856 * 119.61172 * 304.99632 * 17 16 15 23 23 N 1.31414 * 125.98900 * 180.37548 * 12 11 9 24 24 H 0.97006 * 120.00382 * 0.02562 * 1 2 3 25 25 H 0.97006 * 120.00179 * 359.97438 * 11 9 7 26 26 H 1.07999 * 126.06297 * 0.02562 * 13 12 11 27 27 H 1.07997 * 126.04681 * 179.97438 * 14 13 12 28 28 H 1.08996 * 109.47325 * 5.00448 * 16 15 14 29 29 H 1.09007 * 109.47090 * 244.99906 * 16 15 14 30 30 H 1.07998 * 120.41916 * 359.97438 * 18 17 16 31 31 H 1.08008 * 120.78688 * 180.22921 * 19 18 17 32 32 H 1.08002 * 120.42244 * 179.78279 * 20 19 18 33 33 H 1.07996 * 119.61757 * 180.25243 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.7002 1.3465 -0.0006 5 1 1.8814 2.3965 -1.2125 6 1 1.8814 2.3965 1.2125 7 6 2.0070 -1.2135 -0.0005 8 1 3.0870 -1.2134 -0.0001 9 6 1.2765 -2.4789 -0.0005 10 8 0.0589 -2.4789 -0.0005 11 7 1.9504 -3.6461 -0.0005 12 6 1.2521 -4.8557 -0.0011 13 6 -0.1454 -5.0024 -0.0011 14 6 -0.4239 -6.3252 -0.0012 15 7 0.7483 -6.9961 -0.0005 16 6 0.9060 -8.4526 0.0002 17 6 1.7708 -8.8648 -1.1632 18 6 2.9033 -9.6244 -0.9373 19 6 3.6894 -10.0020 -2.0149 20 6 3.3107 -9.5912 -3.2841 21 6 2.1648 -8.8334 -3.4327 22 7 1.4383 -8.4964 -2.3848 23 7 1.7869 -6.0561 0.0058 24 1 -0.4851 0.8401 -0.0004 25 1 2.9204 -3.6461 -0.0009 26 1 -0.8688 -4.2005 -0.0012 27 1 -1.4092 -6.7672 -0.0008 28 1 -0.0726 -8.9241 -0.0895 29 1 1.3767 -8.7667 0.9319 30 1 3.1707 -9.9224 0.0657 31 1 4.5779 -10.5985 -1.8690 32 1 3.9014 -9.8641 -4.1462 33 1 1.8608 -8.5130 -4.4182 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772641796.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:35 Heat of formation + Delta-G solvation = 86.870764 kcal Electronic energy + Delta-G solvation = -19436.759787 eV Core-core repulsion = 16271.709720 eV Total energy + Delta-G solvation = -3165.050067 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.60818 -39.94276 -37.34721 -34.17148 -32.91129 -32.46988 -32.26594 -30.08706 -29.10558 -26.84659 -25.61651 -23.62562 -22.37098 -21.20608 -20.39035 -18.91700 -17.20420 -17.05562 -16.69415 -16.16790 -15.70795 -15.38727 -14.77555 -14.47050 -14.20030 -13.92086 -13.39787 -13.23025 -12.87236 -12.69769 -12.38998 -12.08315 -11.85847 -11.72393 -11.26299 -11.10008 -10.59648 -10.26256 -10.00593 -9.82654 -9.68162 -9.46653 -9.15337 -8.89286 -7.92760 -7.65133 -7.08172 -6.29773 -4.76201 0.93047 1.17423 2.60399 2.98117 3.10270 3.18951 3.23784 3.70576 3.78470 4.05282 4.13545 4.53517 4.58587 4.69606 4.72935 4.88736 4.94943 5.09796 5.26559 5.42771 5.44609 5.57455 5.75384 5.92636 6.00980 6.20205 6.54274 6.61782 6.79648 7.28354 7.37732 7.66382 7.78004 7.92923 8.12672 8.23414 8.55026 8.90952 9.39384 10.45449 10.62891 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.031154 B = 0.003786 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.537239 B = 7393.331837 C = 7839.473667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.087 3.913 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.535 4.535 8 H 0.073 0.927 9 C 0.551 3.449 10 O -0.554 6.554 11 N -0.659 5.659 12 C 0.331 3.669 13 C -0.258 4.258 14 C 0.050 3.950 15 N -0.381 5.381 16 C 0.199 3.801 17 C 0.120 3.880 18 C -0.156 4.156 19 C -0.077 4.077 20 C -0.174 4.174 21 C 0.102 3.898 22 N -0.462 5.462 23 N -0.357 5.357 24 H 0.271 0.729 25 H 0.395 0.605 26 H 0.173 0.827 27 H 0.164 0.836 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.607 -18.407 -2.644 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.134 4.134 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.572 4.572 8 H 0.092 0.908 9 C 0.357 3.643 10 O -0.435 6.435 11 N -0.307 5.307 12 C 0.073 3.927 13 C -0.289 4.289 14 C -0.094 4.094 15 N -0.165 5.165 16 C 0.076 3.924 17 C -0.019 4.019 18 C -0.177 4.177 19 C -0.103 4.103 20 C -0.194 4.194 21 C -0.056 4.056 22 N -0.171 5.171 23 N -0.189 5.189 24 H 0.082 0.918 25 H 0.228 0.772 26 H 0.190 0.810 27 H 0.181 0.819 28 H 0.124 0.876 29 H 0.110 0.890 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.827 -18.483 -2.744 19.074 hybrid contribution 1.076 0.642 -0.022 1.253 sum 4.903 -17.841 -2.766 18.708 Atomic orbital electron populations 1.69994 1.07131 1.27643 1.34002 1.25725 0.94706 1.00446 0.92507 0.86211 0.80478 0.81203 0.78312 1.18633 1.20024 1.20014 1.20812 0.93881 0.88631 1.53850 0.90843 1.18367 0.87434 0.81494 0.77023 1.90531 1.13673 1.85551 1.53705 1.43514 1.09322 1.02017 1.75891 1.19554 0.91664 0.86705 0.94748 1.22079 0.95687 0.95770 1.15375 1.22432 0.90956 0.92775 1.03204 1.47605 1.03667 1.03852 1.61391 1.20239 1.00219 0.77116 0.94817 1.21318 0.94056 0.93680 0.92849 1.21910 0.95469 0.99973 1.00321 1.21538 0.98769 0.97497 0.92513 1.22155 0.98681 1.00317 0.98289 1.22769 0.91313 0.93826 0.97644 1.67449 1.32255 1.18565 0.98872 1.77340 1.10182 0.96139 1.35278 0.91810 0.77218 0.80966 0.81861 0.87561 0.88992 0.84688 0.84829 0.84872 0.82814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.16 11.82 55.55 0.66 -21.50 16 2 C 0.09 2.38 5.50 -17.35 -0.10 2.28 16 3 Si 0.91 19.75 29.56 -169.99 -5.02 14.72 16 4 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.54 -14.96 9.53 -35.72 -0.34 -15.30 16 8 H 0.07 1.88 7.85 -52.48 -0.41 1.46 16 9 C 0.55 15.87 7.70 -13.10 -0.10 15.77 16 10 O -0.55 -17.48 12.13 5.14 0.06 -17.41 16 11 N -0.66 -16.41 5.43 -12.52 -0.07 -16.48 16 12 C 0.33 7.93 8.10 -154.67 -1.25 6.68 16 13 C -0.26 -5.97 9.60 -39.81 -0.38 -6.35 16 14 C 0.05 0.91 11.43 -17.22 -0.20 0.71 16 15 N -0.38 -6.77 3.62 -62.55 -0.23 -6.99 16 16 C 0.20 2.51 6.89 -5.19 -0.04 2.47 16 17 C 0.12 1.60 6.25 -82.58 -0.52 1.08 16 18 C -0.16 -1.67 9.71 -39.44 -0.38 -2.06 16 19 C -0.08 -0.73 10.18 -39.28 -0.40 -1.13 16 20 C -0.17 -1.71 10.11 -39.44 -0.40 -2.11 16 21 C 0.10 1.24 11.18 -17.55 -0.20 1.05 16 22 N -0.46 -6.95 10.22 -9.47 -0.10 -7.04 16 23 N -0.36 -7.69 12.44 31.39 0.39 -7.30 16 24 H 0.27 7.12 8.29 -40.82 -0.34 6.79 16 25 H 0.39 8.78 8.80 -40.82 -0.36 8.42 16 26 H 0.17 4.44 5.90 -52.49 -0.31 4.13 16 27 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 28 H 0.11 1.02 8.07 -51.93 -0.42 0.61 16 29 H 0.09 0.94 7.87 -51.92 -0.41 0.53 16 30 H 0.14 1.10 7.95 -52.49 -0.42 0.68 16 31 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 32 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.15 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 299.68 15.07 4.52 4.52 Total: -1.00 -36.60 299.68 -7.24 -43.84 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -3.15 Total: 10.55 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -4.30 Total: 3.11 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: 0.66 Total: -59.32 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: 0.06 Total: -17.41 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -36.60 -7.24 -43.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772641796.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.714 kcal (2) G-P(sol) polarization free energy of solvation -36.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds