Wall clock time and date at job start Mon Mar 30 2020 00:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86802 * 119.99495 * 2 1 4 4 H 1.48503 * 109.46863 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47136 * 299.99920 * 3 2 1 6 6 H 1.48498 * 109.47150 * 60.00175 * 3 2 1 7 7 C 1.40127 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99755 * 180.02562 * 7 2 1 9 9 C 1.46115 * 120.00047 * 359.97438 * 7 2 1 10 10 O 1.21757 * 119.99817 * 0.02562 * 9 7 2 11 11 N 1.34772 * 120.00003 * 180.02562 * 9 7 2 12 12 C 1.39672 * 120.00104 * 180.02562 * 11 9 7 13 13 C 1.40514 * 125.98848 * 359.97438 * 12 11 9 14 14 C 1.35178 * 107.87995 * 180.02562 * 13 12 11 15 15 N 1.35061 * 107.89923 * 0.02562 * 14 13 12 16 16 C 1.46501 * 125.96806 * 179.97438 * 15 14 13 17 17 C 1.50707 * 109.46945 * 125.00492 * 16 15 14 18 18 C 1.38227 * 119.62024 * 124.97880 * 17 16 15 19 19 C 1.38627 * 119.15702 * 179.78495 * 18 17 16 20 20 C 1.38669 * 118.42389 * 0.47826 * 19 18 17 21 21 C 1.38186 * 119.16143 * 359.49762 * 20 19 18 22 22 N 1.31856 * 119.61172 * 304.99632 * 17 16 15 23 23 N 1.31414 * 125.98900 * 180.37548 * 12 11 9 24 24 H 0.97006 * 120.00382 * 0.02562 * 1 2 3 25 25 H 0.97006 * 120.00179 * 359.97438 * 11 9 7 26 26 H 1.07999 * 126.06297 * 0.02562 * 13 12 11 27 27 H 1.07997 * 126.04681 * 179.97438 * 14 13 12 28 28 H 1.08996 * 109.47325 * 5.00448 * 16 15 14 29 29 H 1.09007 * 109.47090 * 244.99906 * 16 15 14 30 30 H 1.07998 * 120.41916 * 359.97438 * 18 17 16 31 31 H 1.08008 * 120.78688 * 180.22921 * 19 18 17 32 32 H 1.08002 * 120.42244 * 179.78279 * 20 19 18 33 33 H 1.07996 * 119.61757 * 180.25243 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.7002 1.3465 -0.0006 5 1 1.8814 2.3965 -1.2125 6 1 1.8814 2.3965 1.2125 7 6 2.0070 -1.2135 -0.0005 8 1 3.0870 -1.2134 -0.0001 9 6 1.2765 -2.4789 -0.0005 10 8 0.0589 -2.4789 -0.0005 11 7 1.9504 -3.6461 -0.0005 12 6 1.2521 -4.8557 -0.0011 13 6 -0.1454 -5.0024 -0.0011 14 6 -0.4239 -6.3252 -0.0012 15 7 0.7483 -6.9961 -0.0005 16 6 0.9060 -8.4526 0.0002 17 6 1.7708 -8.8648 -1.1632 18 6 2.9033 -9.6244 -0.9373 19 6 3.6894 -10.0020 -2.0149 20 6 3.3107 -9.5912 -3.2841 21 6 2.1648 -8.8334 -3.4327 22 7 1.4383 -8.4964 -2.3848 23 7 1.7869 -6.0561 0.0058 24 1 -0.4851 0.8401 -0.0004 25 1 2.9204 -3.6461 -0.0009 26 1 -0.8688 -4.2005 -0.0012 27 1 -1.4092 -6.7672 -0.0008 28 1 -0.0726 -8.9241 -0.0895 29 1 1.3767 -8.7667 0.9319 30 1 3.1707 -9.9224 0.0657 31 1 4.5779 -10.5985 -1.8690 32 1 3.9014 -9.8641 -4.1462 33 1 1.8608 -8.5130 -4.4182 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772641796.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:34 Heat of formation + Delta-G solvation = 60.405589 kcal Electronic energy + Delta-G solvation = -19437.907403 eV Core-core repulsion = 16271.709720 eV Total energy + Delta-G solvation = -3166.197683 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.05306 -40.98056 -39.38454 -35.73306 -34.66403 -34.13015 -33.29453 -31.40710 -30.70244 -28.73629 -27.02319 -24.46327 -23.62594 -22.89481 -21.88081 -20.76832 -19.16400 -18.20211 -17.81735 -17.46618 -17.27111 -16.64525 -16.24826 -15.96738 -15.76902 -15.10084 -14.84893 -14.62741 -14.19836 -14.09965 -13.78930 -13.65675 -13.21873 -13.18338 -12.81219 -12.72055 -12.61345 -11.96987 -11.51445 -11.43630 -10.93486 -10.81599 -10.39097 -10.01079 -9.84125 -9.59278 -8.85665 -8.36121 -6.94281 0.08379 0.37461 1.03509 1.41367 1.41736 1.58301 1.64597 1.95624 2.24650 2.55586 2.76656 3.01582 3.26215 3.60498 3.74633 3.92021 4.03040 4.10662 4.21737 4.27597 4.42699 4.63913 4.65837 4.81019 4.96328 5.08373 5.18569 5.24848 5.26073 5.52640 5.69952 5.77000 6.09840 6.30972 6.35007 6.73684 6.81508 7.05371 7.44376 8.34563 8.57934 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.031154 B = 0.003786 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.537239 B = 7393.331837 C = 7839.473667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.031 3.969 3 Si 1.005 2.995 4 H -0.248 1.248 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.562 4.562 8 H 0.092 0.908 9 C 0.535 3.465 10 O -0.594 6.594 11 N -0.657 5.657 12 C 0.297 3.703 13 C -0.311 4.311 14 C 0.085 3.915 15 N -0.362 5.362 16 C 0.186 3.814 17 C 0.091 3.909 18 C -0.157 4.157 19 C -0.078 4.078 20 C -0.168 4.168 21 C 0.075 3.925 22 N -0.507 5.507 23 N -0.361 5.361 24 H 0.279 0.721 25 H 0.404 0.596 26 H 0.136 0.864 27 H 0.215 0.785 28 H 0.140 0.860 29 H 0.122 0.878 30 H 0.162 0.838 31 H 0.169 0.831 32 H 0.164 0.836 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.476 -20.169 -2.575 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.185 4.185 3 Si 0.824 3.176 4 H -0.171 1.171 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.598 4.598 8 H 0.110 0.890 9 C 0.341 3.659 10 O -0.478 6.478 11 N -0.306 5.306 12 C 0.041 3.959 13 C -0.343 4.343 14 C -0.062 4.062 15 N -0.146 5.146 16 C 0.065 3.935 17 C -0.048 4.048 18 C -0.177 4.177 19 C -0.104 4.104 20 C -0.187 4.187 21 C -0.082 4.082 22 N -0.217 5.217 23 N -0.194 5.194 24 H 0.089 0.911 25 H 0.238 0.762 26 H 0.154 0.846 27 H 0.231 0.769 28 H 0.157 0.843 29 H 0.140 0.860 30 H 0.179 0.821 31 H 0.186 0.814 32 H 0.181 0.819 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.750 -20.321 -2.676 21.288 hybrid contribution 0.494 0.898 -0.087 1.029 sum 6.244 -19.423 -2.764 20.588 Atomic orbital electron populations 1.70142 1.09525 1.29444 1.34831 1.27005 0.95626 1.04876 0.91035 0.84860 0.79219 0.74834 0.78713 1.17057 1.19150 1.19024 1.21336 0.94974 0.89105 1.54397 0.88986 1.18774 0.87303 0.82917 0.76882 1.90509 1.15240 1.86523 1.55507 1.43099 1.09614 1.02019 1.75870 1.19716 0.92177 0.86973 0.96986 1.21851 0.95014 0.97318 1.20077 1.22912 0.92917 0.91104 0.99260 1.48078 1.02684 1.05563 1.58252 1.20882 1.02792 0.73566 0.96261 1.21457 0.95477 0.95388 0.92439 1.22253 0.94368 0.98951 1.02114 1.22023 0.99459 0.97022 0.91886 1.22507 0.97705 0.98700 0.99814 1.23087 0.92505 0.94964 0.97613 1.67357 1.33996 1.20206 1.00092 1.77232 1.11728 0.95706 1.34716 0.91068 0.76173 0.84621 0.76895 0.84261 0.86038 0.82090 0.81381 0.81884 0.82044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.99 11.82 21.85 0.26 -48.74 16 2 C 0.03 1.72 5.50 85.33 0.47 2.19 16 3 Si 1.01 40.60 29.56 68.60 2.03 42.63 16 4 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 5 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 6 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 7 C -0.56 -32.30 9.53 24.77 0.24 -32.06 16 8 H 0.09 4.74 7.85 -2.91 -0.02 4.72 16 9 C 0.54 32.46 7.70 86.29 0.66 33.12 16 10 O -0.59 -39.96 12.13 -4.53 -0.05 -40.02 16 11 N -0.66 -34.35 5.43 -311.72 -1.69 -36.04 16 12 C 0.30 14.80 8.10 133.46 1.08 15.88 16 13 C -0.31 -15.05 9.60 22.12 0.21 -14.84 16 14 C 0.08 3.01 11.43 83.49 0.95 3.97 16 15 N -0.36 -12.35 3.62 -351.80 -1.27 -13.62 16 16 C 0.19 4.12 6.89 85.64 0.59 4.71 16 17 C 0.09 2.22 6.25 42.55 0.27 2.49 16 18 C -0.16 -2.87 9.71 22.36 0.22 -2.65 16 19 C -0.08 -1.20 10.18 22.47 0.23 -0.97 16 20 C -0.17 -2.84 10.11 22.36 0.23 -2.62 16 21 C 0.08 1.76 11.18 84.67 0.95 2.71 16 22 N -0.51 -14.72 10.22 -183.88 -1.88 -16.60 16 23 N -0.36 -15.56 12.44 -54.59 -0.68 -16.24 16 24 H 0.28 15.12 8.29 -92.70 -0.77 14.35 16 25 H 0.40 18.71 8.80 -92.70 -0.82 17.89 16 26 H 0.14 7.58 5.90 -2.91 -0.02 7.56 16 27 H 0.21 5.23 8.06 -2.91 -0.02 5.21 16 28 H 0.14 2.15 8.07 -2.39 -0.02 2.13 16 29 H 0.12 2.01 7.87 -2.38 -0.02 1.99 16 30 H 0.16 1.96 7.95 -2.91 -0.02 1.94 16 31 H 0.17 1.37 8.06 -2.91 -0.02 1.34 16 32 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -85.66 299.68 3.14 -82.52 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: 0.34 Total: 34.19 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 6.09 Total: 11.93 kcal Atomic # 7 Polarization: -125.98 SS G_CDS: -5.27 Total: -131.24 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -0.05 Total: -40.02 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -85.66 3.14 -82.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772641796.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.922 kcal (2) G-P(sol) polarization free energy of solvation -85.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds