Wall clock time and date at job start Mon Mar 30 2020 01:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31161 * 1 3 3 Cl 1.73606 * 119.99965 * 2 1 4 4 C 1.50696 * 120.00160 * 180.02562 * 2 1 3 5 5 N 1.46497 * 109.47354 * 114.99777 * 4 2 1 6 6 C 1.34777 * 119.99973 * 180.02562 * 5 4 2 7 7 O 1.21582 * 120.00260 * 5.07310 * 6 5 4 8 8 N 1.34776 * 119.99843 * 185.07392 * 6 5 4 9 9 C 1.46924 * 120.63203 * 174.96422 * 8 6 5 10 10 C 1.53192 * 108.89241 * 233.51595 * 9 8 6 11 11 C 1.53073 * 109.29725 * 305.57392 * 10 9 8 12 12 C 1.50701 * 109.44618 * 181.23934 * 11 10 9 13 13 H 1.08006 * 119.99615 * 239.80166 * 12 11 10 14 14 C 1.37872 * 120.00075 * 59.79246 * 12 11 10 15 15 N 1.31514 * 119.99950 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00067 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47258 * 59.99930 * 16 14 12 18 18 H 1.48496 * 109.47233 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46863 * 300.00252 * 16 14 12 20 20 C 1.53041 * 109.65613 * 61.15423 * 11 10 9 21 21 C 1.46925 * 120.63053 * 354.93961 * 8 6 5 22 22 H 1.07995 * 119.99757 * 179.97438 * 1 2 3 23 23 H 1.08001 * 119.99788 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46780 * 354.99864 * 4 2 1 25 25 H 1.09006 * 109.47482 * 235.00117 * 4 2 1 26 26 H 0.96995 * 120.00312 * 0.02562 * 5 4 2 27 27 H 1.09003 * 109.58551 * 353.37076 * 9 8 6 28 28 H 1.09003 * 109.59284 * 113.65521 * 9 8 6 29 29 H 1.08999 * 109.50135 * 65.39043 * 10 9 8 30 30 H 1.09009 * 109.49711 * 185.48248 * 10 9 8 31 31 H 1.08998 * 109.34575 * 301.13521 * 11 10 9 32 32 H 0.97001 * 119.99874 * 179.97438 * 15 14 12 33 33 H 1.08996 * 109.50055 * 178.75160 * 20 11 10 34 34 H 1.08997 * 109.52573 * 58.66486 * 20 11 10 35 35 H 1.09007 * 109.58969 * 246.20103 * 21 8 6 36 36 H 1.09002 * 109.59022 * 6.48510 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1796 1.5035 0.0000 4 6 2.0651 -1.3050 -0.0006 5 7 2.8148 -1.4356 -1.2524 6 6 3.5671 -2.5312 -1.4763 7 8 3.5516 -3.4519 -0.6824 8 7 4.3365 -2.6063 -2.5803 9 6 5.2446 -3.7432 -2.7840 10 6 6.6556 -3.2094 -3.0507 11 6 6.6100 -2.2206 -4.2183 12 6 8.0013 -1.7164 -4.5033 13 1 8.2176 -0.6604 -4.4347 14 6 8.9981 -2.6031 -4.8513 15 7 8.7346 -3.8888 -4.9351 16 14 10.7227 -1.9782 -5.2039 17 1 11.2568 -1.2928 -3.9996 18 1 11.6021 -3.1226 -5.5535 19 1 10.6803 -1.0223 -6.3395 20 6 5.7039 -1.0408 -3.8587 21 6 4.2828 -1.5530 -3.6032 22 1 -0.5399 -0.9353 -0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.3602 -2.1316 0.0886 25 1 2.7573 -1.3254 0.8413 26 1 2.7698 -0.7335 -1.9202 27 1 5.2532 -4.3685 -1.8912 28 1 4.9087 -4.3308 -3.6384 29 1 7.0268 -2.7015 -2.1605 30 1 7.3175 -4.0391 -3.2993 31 1 6.2178 -2.7234 -5.1022 32 1 9.4358 -4.5126 -5.1803 33 1 5.6908 -0.3277 -4.6829 34 1 6.0813 -0.5521 -2.9606 35 1 3.8698 -1.9604 -4.5260 36 1 3.6547 -0.7342 -3.2521 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781809527.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:59 Heat of formation + Delta-G solvation = -20.396104 kcal Electronic energy + Delta-G solvation = -18973.798490 eV Core-core repulsion = 15905.204476 eV Total energy + Delta-G solvation = -3068.594014 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.99041 -37.47053 -36.81102 -35.21446 -33.59568 -32.59612 -30.99316 -30.04448 -26.85415 -25.60802 -22.99392 -22.17835 -20.65471 -20.19059 -18.81670 -17.79686 -16.41367 -16.33367 -15.77075 -15.09269 -14.63037 -14.43941 -14.06865 -13.71809 -13.23031 -13.06177 -12.72095 -12.58322 -12.40053 -12.12096 -11.99601 -11.79912 -11.12116 -11.06388 -10.91135 -10.67554 -10.42394 -10.05439 -9.88729 -9.55823 -9.53822 -9.18825 -9.04506 -8.88692 -8.35201 -7.89655 -6.00542 -4.07350 1.41164 1.92315 3.06182 3.31028 3.36209 3.38520 3.54437 4.21101 4.23599 4.42347 5.14333 5.23684 5.29088 5.37445 5.43860 5.69975 5.76789 5.84762 5.86968 6.05213 6.28156 6.43100 6.48021 6.54993 6.63153 6.81473 6.98633 7.13584 7.24728 7.48683 7.71953 7.94340 8.07150 8.27813 8.41622 8.90626 8.95692 9.57655 11.04797 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.029352 B = 0.004166 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.716800 B = 6719.315076 C = 7323.520802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 Cl -0.079 7.079 4 C 0.179 3.821 5 N -0.751 5.751 6 C 0.707 3.293 7 O -0.601 6.601 8 N -0.616 5.616 9 C 0.127 3.873 10 C -0.123 4.123 11 C 0.050 3.950 12 C -0.514 4.514 13 H 0.054 0.946 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.891 3.109 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.278 1.278 20 C -0.123 4.123 21 C 0.113 3.887 22 H 0.127 0.873 23 H 0.116 0.884 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.398 0.602 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.037 0.963 30 H 0.104 0.896 31 H 0.027 0.973 32 H 0.261 0.739 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.643 7.271 6.853 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.117 4.117 3 Cl -0.051 7.051 4 C 0.054 3.946 5 N -0.410 5.410 6 C 0.409 3.591 7 O -0.480 6.480 8 N -0.352 5.352 9 C 0.005 3.995 10 C -0.162 4.162 11 C 0.031 3.969 12 C -0.553 4.553 13 H 0.072 0.928 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.719 3.281 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.162 4.162 21 C -0.010 4.010 22 H 0.145 0.855 23 H 0.134 0.866 24 H 0.104 0.896 25 H 0.098 0.902 26 H 0.235 0.765 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.122 0.878 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.449 6.528 7.387 18.326 hybrid contribution 1.007 0.919 -0.533 1.463 sum -14.442 7.447 6.854 17.635 Atomic orbital electron populations 1.24166 0.93643 1.04115 0.97266 1.23498 0.94164 0.88148 1.05930 1.98403 1.77988 1.31852 1.96833 1.20177 0.95083 0.91616 0.87691 1.45216 1.52178 1.22671 1.20948 1.15804 0.78885 0.82285 0.82167 1.90866 1.70592 1.38438 1.48131 1.47444 1.42463 1.25351 1.19973 1.21781 0.90436 0.86511 1.00786 1.22039 0.92875 1.02510 0.98747 1.18622 0.93737 0.90717 0.93814 1.21150 0.94340 0.93447 1.46319 0.92813 1.24954 0.98754 0.94907 0.95292 1.69833 1.33255 1.01514 1.48291 0.86680 0.84438 0.78274 0.78722 1.20353 1.21305 1.20348 1.22009 0.93200 1.00299 1.00669 1.21726 0.99210 0.89150 0.90952 0.85518 0.86596 0.89578 0.90167 0.76535 0.90583 0.92539 0.94380 0.87784 0.95483 0.92893 0.92150 0.92844 0.91842 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 14.05 28.97 0.41 -0.63 16 2 C -0.09 -0.82 5.87 -36.07 -0.21 -1.03 16 3 Cl -0.08 -0.80 28.99 -51.86 -1.50 -2.30 16 4 C 0.18 2.03 5.99 -5.20 -0.03 2.00 16 5 N -0.75 -10.31 5.46 -66.42 -0.36 -10.68 16 6 C 0.71 12.73 8.30 -86.92 -0.72 12.01 16 7 O -0.60 -12.71 15.79 5.29 0.08 -12.62 16 8 N -0.62 -11.29 2.97 -178.49 -0.53 -11.82 16 9 C 0.13 2.57 6.41 -3.71 -0.02 2.55 16 10 C -0.12 -2.86 5.16 -26.59 -0.14 -3.00 16 11 C 0.05 1.18 2.06 -91.71 -0.19 0.99 16 12 C -0.51 -13.71 8.56 -34.44 -0.29 -14.00 16 13 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 14 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 15 N -0.89 -24.77 11.30 55.43 0.63 -24.14 16 16 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C -0.12 -2.39 5.30 -26.61 -0.14 -2.53 16 21 C 0.11 1.83 6.43 -3.71 -0.02 1.80 16 22 H 0.13 0.67 7.84 -52.49 -0.41 0.26 16 23 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 24 H 0.09 0.93 7.80 -51.93 -0.40 0.52 16 25 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.40 4.86 5.92 -40.82 -0.24 4.62 16 27 H 0.08 1.58 7.04 -51.93 -0.37 1.22 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.10 2.69 6.03 -51.92 -0.31 2.38 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 36 H 0.06 0.77 5.56 -51.93 -0.29 0.48 16 LS Contribution 310.09 15.07 4.67 4.67 Total: -1.00 -29.99 310.09 -8.45 -38.43 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -4.95 Total: 2.75 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.46 Total: -0.25 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.27 Total: -46.64 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.99 -8.45 -38.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781809527.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.037 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds