Wall clock time and date at job start Mon Mar 30 2020 01:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31161 * 1 3 3 Cl 1.73606 * 119.99965 * 2 1 4 4 C 1.50696 * 120.00160 * 180.02562 * 2 1 3 5 5 N 1.46497 * 109.47354 * 114.99777 * 4 2 1 6 6 C 1.34777 * 119.99973 * 180.02562 * 5 4 2 7 7 O 1.21582 * 120.00260 * 5.07310 * 6 5 4 8 8 N 1.34776 * 119.99843 * 185.07392 * 6 5 4 9 9 C 1.46924 * 120.63203 * 174.96422 * 8 6 5 10 10 C 1.53192 * 108.89241 * 233.51595 * 9 8 6 11 11 C 1.53073 * 109.29725 * 305.57392 * 10 9 8 12 12 C 1.50701 * 109.44618 * 181.23934 * 11 10 9 13 13 H 1.08006 * 119.99615 * 239.80166 * 12 11 10 14 14 C 1.37872 * 120.00075 * 59.79246 * 12 11 10 15 15 N 1.31514 * 119.99950 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00067 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47258 * 59.99930 * 16 14 12 18 18 H 1.48496 * 109.47233 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46863 * 300.00252 * 16 14 12 20 20 C 1.53041 * 109.65613 * 61.15423 * 11 10 9 21 21 C 1.46925 * 120.63053 * 354.93961 * 8 6 5 22 22 H 1.07995 * 119.99757 * 179.97438 * 1 2 3 23 23 H 1.08001 * 119.99788 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46780 * 354.99864 * 4 2 1 25 25 H 1.09006 * 109.47482 * 235.00117 * 4 2 1 26 26 H 0.96995 * 120.00312 * 0.02562 * 5 4 2 27 27 H 1.09003 * 109.58551 * 353.37076 * 9 8 6 28 28 H 1.09003 * 109.59284 * 113.65521 * 9 8 6 29 29 H 1.08999 * 109.50135 * 65.39043 * 10 9 8 30 30 H 1.09009 * 109.49711 * 185.48248 * 10 9 8 31 31 H 1.08998 * 109.34575 * 301.13521 * 11 10 9 32 32 H 0.97001 * 119.99874 * 179.97438 * 15 14 12 33 33 H 1.08996 * 109.50055 * 178.75160 * 20 11 10 34 34 H 1.08997 * 109.52573 * 58.66486 * 20 11 10 35 35 H 1.09007 * 109.58969 * 246.20103 * 21 8 6 36 36 H 1.09002 * 109.59022 * 6.48510 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1796 1.5035 0.0000 4 6 2.0651 -1.3050 -0.0006 5 7 2.8148 -1.4356 -1.2524 6 6 3.5671 -2.5312 -1.4763 7 8 3.5516 -3.4519 -0.6824 8 7 4.3365 -2.6063 -2.5803 9 6 5.2446 -3.7432 -2.7840 10 6 6.6556 -3.2094 -3.0507 11 6 6.6100 -2.2206 -4.2183 12 6 8.0013 -1.7164 -4.5033 13 1 8.2176 -0.6604 -4.4347 14 6 8.9981 -2.6031 -4.8513 15 7 8.7346 -3.8888 -4.9351 16 14 10.7227 -1.9782 -5.2039 17 1 11.2568 -1.2928 -3.9996 18 1 11.6021 -3.1226 -5.5535 19 1 10.6803 -1.0223 -6.3395 20 6 5.7039 -1.0408 -3.8587 21 6 4.2828 -1.5530 -3.6032 22 1 -0.5399 -0.9353 -0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.3602 -2.1316 0.0886 25 1 2.7573 -1.3254 0.8413 26 1 2.7698 -0.7335 -1.9202 27 1 5.2532 -4.3685 -1.8912 28 1 4.9087 -4.3308 -3.6384 29 1 7.0268 -2.7015 -2.1605 30 1 7.3175 -4.0391 -3.2993 31 1 6.2178 -2.7234 -5.1022 32 1 9.4358 -4.5126 -5.1803 33 1 5.6908 -0.3277 -4.6829 34 1 6.0813 -0.5521 -2.9606 35 1 3.8698 -1.9604 -4.5260 36 1 3.6547 -0.7342 -3.2521 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781809527.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:59 Heat of formation + Delta-G solvation = -38.534287 kcal Electronic energy + Delta-G solvation = -18974.585020 eV Core-core repulsion = 15905.204476 eV Total energy + Delta-G solvation = -3069.380544 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.39769 -38.71632 -37.89791 -36.24485 -35.37074 -33.68714 -32.71622 -31.61524 -28.29906 -27.00609 -24.66241 -23.81269 -21.78523 -21.41412 -20.24517 -19.17906 -18.31357 -17.52596 -16.91775 -16.54023 -16.33915 -15.53205 -15.31541 -15.03489 -14.79405 -14.59342 -14.24082 -14.04839 -13.62536 -13.38443 -13.13606 -12.97465 -12.78292 -12.66267 -12.49588 -12.15414 -11.94028 -11.81212 -11.43499 -11.36697 -10.95015 -10.79965 -10.40349 -10.32390 -10.16354 -9.39916 -8.06169 -6.20091 0.76583 1.26076 1.43132 1.44040 1.51223 1.78905 2.14257 2.45036 2.96522 3.20396 3.49732 4.07214 4.24200 4.31232 4.34045 4.50621 4.58981 4.60412 4.72443 4.73298 4.90737 4.98701 5.15587 5.18766 5.19856 5.24151 5.42326 5.47387 5.49695 5.66357 5.98682 6.03267 6.13397 6.39840 6.90993 6.95522 7.47962 7.51941 8.97046 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.029352 B = 0.004166 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.716800 B = 6719.315076 C = 7323.520802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.114 4.114 3 Cl -0.093 7.093 4 C 0.179 3.821 5 N -0.735 5.735 6 C 0.704 3.296 7 O -0.636 6.636 8 N -0.621 5.621 9 C 0.139 3.861 10 C -0.111 4.111 11 C 0.046 3.954 12 C -0.534 4.534 13 H 0.052 0.948 14 C 0.014 3.986 15 N -0.915 5.915 16 Si 0.950 3.050 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.270 1.270 20 C -0.116 4.116 21 C 0.118 3.882 22 H 0.146 0.854 23 H 0.132 0.868 24 H 0.095 0.905 25 H 0.066 0.934 26 H 0.407 0.593 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.020 0.980 30 H 0.074 0.926 31 H 0.005 0.995 32 H 0.260 0.740 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.427 8.783 6.845 20.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.140 4.140 3 Cl -0.065 7.065 4 C 0.055 3.945 5 N -0.393 5.393 6 C 0.406 3.594 7 O -0.518 6.518 8 N -0.357 5.357 9 C 0.016 3.984 10 C -0.150 4.150 11 C 0.027 3.973 12 C -0.572 4.572 13 H 0.070 0.930 14 C -0.184 4.184 15 N -0.554 5.554 16 Si 0.776 3.224 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.195 1.195 20 C -0.154 4.154 21 C -0.004 4.004 22 H 0.164 0.836 23 H 0.150 0.850 24 H 0.113 0.887 25 H 0.084 0.916 26 H 0.245 0.755 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.039 0.961 30 H 0.092 0.908 31 H 0.023 0.977 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.264 8.093 7.376 20.444 hybrid contribution 1.487 0.455 -0.504 1.635 sum -15.777 8.549 6.872 19.215 Atomic orbital electron populations 1.24503 0.92683 1.05784 0.92708 1.23224 0.94457 0.86577 1.09787 1.98399 1.78538 1.32467 1.97131 1.20266 0.94879 0.93446 0.85918 1.45145 1.51027 1.21255 1.21922 1.15946 0.79128 0.82878 0.81465 1.90840 1.71789 1.40029 1.49142 1.47390 1.42247 1.25249 1.20824 1.21428 0.89243 0.87179 1.00527 1.21793 0.94253 1.01230 0.97726 1.18604 0.93512 0.92247 0.92939 1.21562 0.96017 0.93463 1.46186 0.92997 1.25688 1.02295 0.95124 0.95330 1.69968 1.34145 1.02385 1.48929 0.85745 0.80239 0.77804 0.78645 1.20155 1.21136 1.19517 1.21862 0.94241 0.98635 1.00645 1.21799 0.97704 0.89665 0.91255 0.83635 0.84965 0.88749 0.91619 0.75468 0.91395 0.92069 0.96147 0.90796 0.97673 0.93047 0.90833 0.93700 0.90506 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 14.05 67.62 0.95 -0.19 16 2 C -0.11 -1.76 5.87 25.48 0.15 -1.62 16 3 Cl -0.09 -1.71 28.99 -2.72 -0.08 -1.79 16 4 C 0.18 3.73 5.99 85.63 0.51 4.24 16 5 N -0.73 -18.67 5.46 -482.30 -2.63 -21.30 16 6 C 0.70 24.53 8.30 179.05 1.49 26.02 16 7 O -0.64 -26.68 15.79 -3.97 -0.06 -26.74 16 8 N -0.62 -22.12 2.97 -836.89 -2.49 -24.60 16 9 C 0.14 5.72 6.41 86.36 0.55 6.27 16 10 C -0.11 -5.32 5.16 30.68 0.16 -5.16 16 11 C 0.05 2.19 2.06 -11.50 -0.02 2.16 16 12 C -0.53 -28.77 8.56 25.60 0.22 -28.55 16 13 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 14 C 0.01 0.79 5.30 84.65 0.45 1.23 16 15 N -0.91 -52.03 11.30 21.45 0.24 -51.79 16 16 Si 0.95 43.28 29.54 68.60 2.03 45.30 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 C -0.12 -4.34 5.30 30.67 0.16 -4.18 16 21 C 0.12 3.56 6.43 86.36 0.56 4.11 16 22 H 0.15 0.90 7.84 -2.91 -0.02 0.88 16 23 H 0.13 0.92 8.06 -2.91 -0.02 0.89 16 24 H 0.09 1.83 7.80 -2.39 -0.02 1.81 16 25 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.41 8.75 5.92 -92.71 -0.55 8.20 16 27 H 0.07 2.89 7.04 -2.39 -0.02 2.87 16 28 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 3.98 6.03 -2.38 -0.01 3.97 16 31 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 33 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 36 H 0.10 2.19 5.56 -2.39 -0.01 2.18 16 Total: -1.00 -65.74 310.09 2.71 -63.03 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.53 Total: 13.55 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 5.17 Total: 4.35 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -4.88 Total: -97.69 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.06 Total: -26.74 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.79 kcal Total: -65.74 2.71 -63.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781809527.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.500 kcal (2) G-P(sol) polarization free energy of solvation -65.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds