Wall clock time and date at job start Mon Mar 30 2020 00:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31301 * 1 3 3 Si 1.86803 * 119.99959 * 2 1 4 4 H 1.48493 * 109.47215 * 274.87593 * 3 2 1 5 5 H 1.48503 * 109.46989 * 34.87707 * 3 2 1 6 6 H 1.48498 * 109.46924 * 154.87110 * 3 2 1 7 7 C 1.38977 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00032 * 174.30339 * 7 2 1 9 9 N 1.37309 * 120.00402 * 354.57406 * 7 2 1 10 10 C 1.36504 * 126.07098 * 185.40489 * 9 7 2 11 11 C 1.35702 * 107.50594 * 179.97438 * 10 9 7 12 12 N 1.40510 * 126.08979 * 179.97438 * 11 10 9 13 13 C 1.34771 * 120.00342 * 180.02562 * 12 11 10 14 14 O 1.21810 * 120.00003 * 0.02562 * 13 12 11 15 15 C 1.41503 * 120.00036 * 180.02562 * 13 12 11 16 16 C 1.35619 * 119.99934 * 186.66197 * 15 13 12 17 17 C 1.41678 * 120.00143 * 7.77392 * 16 15 13 18 18 C 1.38277 * 126.25675 * 217.98971 * 17 16 15 19 19 C 1.39798 * 107.07642 * 179.89877 * 18 17 16 20 20 C 1.35493 * 107.91381 * 0.36439 * 19 18 17 21 21 N 1.35775 * 108.90535 * 359.77409 * 20 19 18 22 22 H 0.97000 * 125.68775 * 180.02562 * 21 20 19 23 23 C 1.40681 * 107.82753 * 0.02562 * 11 10 9 24 24 N 1.30908 * 108.38759 * 359.75439 * 23 11 10 25 25 H 0.97006 * 119.99918 * 0.02562 * 1 2 3 26 26 H 1.08001 * 126.24620 * 359.93822 * 10 9 7 27 27 H 0.97008 * 119.99417 * 0.02562 * 12 11 10 28 28 H 1.08004 * 119.99844 * 6.65563 * 15 13 12 29 29 H 1.08004 * 119.99733 * 187.76779 * 16 15 13 30 30 H 1.08002 * 126.46243 * 0.02562 * 18 17 16 31 31 H 1.08000 * 126.04336 * 180.13531 * 19 18 17 32 32 H 1.07998 * 125.54841 * 179.74481 * 20 19 18 33 33 H 1.07994 * 125.80431 * 179.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.3915 2.1059 -1.3949 5 1 1.4998 2.6207 0.8006 6 1 3.5922 1.4126 0.5945 7 6 2.0079 -1.2036 -0.0005 8 1 3.0839 -1.2059 -0.0934 9 7 1.3260 -2.3901 0.1114 10 6 1.8845 -3.6302 0.2282 11 6 0.8707 -4.5281 0.3135 12 7 1.0070 -5.9205 0.4444 13 6 -0.0892 -6.7010 0.5182 14 8 -1.1982 -6.1995 0.4710 15 6 0.0482 -8.1031 0.6506 16 6 -1.0470 -8.9006 0.5891 17 6 -2.3031 -8.3525 0.2297 18 6 -3.5299 -8.6986 0.7657 19 6 -4.4935 -7.9134 0.1261 20 6 -3.8582 -7.1251 -0.7743 21 7 -2.5260 -7.3822 -0.7214 22 1 -1.8450 -6.9535 -1.2631 23 6 -0.3413 -3.8170 0.2464 24 7 -0.0663 -2.5424 0.1309 25 1 -0.4850 0.8401 -0.0004 26 1 2.9406 -3.8556 0.2483 27 1 1.8903 -6.3199 0.4816 28 1 1.0253 -8.5382 0.8004 29 1 -0.9616 -9.9535 0.8141 30 1 -3.7095 -9.4351 1.5350 31 1 -5.5569 -7.9343 0.3136 32 1 -4.3339 -6.4091 -1.4281 33 1 -1.3303 -4.2489 0.2872 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783592958.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:47 Heat of formation + Delta-G solvation = 139.275917 kcal Electronic energy + Delta-G solvation = -19855.063774 eV Core-core repulsion = 16692.286165 eV Total energy + Delta-G solvation = -3162.777609 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.96385 -39.80242 -38.57304 -34.36629 -33.44868 -33.16018 -30.53594 -30.27885 -28.60297 -27.33787 -25.05004 -23.35863 -21.09405 -20.60421 -20.02709 -19.52137 -19.24826 -17.88238 -17.26966 -15.75130 -15.52909 -15.26649 -14.53747 -14.26153 -14.12389 -13.63403 -13.36812 -13.22431 -13.03586 -12.85632 -12.57023 -11.96170 -11.74130 -11.70203 -11.43599 -11.28830 -10.97178 -10.54905 -10.21139 -9.68806 -9.23035 -9.18678 -8.83412 -8.36750 -8.08590 -7.38547 -6.67679 -6.59071 -4.25046 0.92075 2.86732 2.95221 3.03244 3.08731 3.25089 3.46599 3.70149 3.81956 3.83126 3.96439 4.45517 4.78668 4.98730 5.09169 5.24939 5.50866 5.57740 5.68739 5.78714 6.13153 6.14568 6.23439 6.47122 6.52809 6.59687 6.90259 6.94689 7.12704 7.22758 7.27035 7.45613 7.83703 7.96288 8.18536 8.27855 8.62186 8.88112 9.35110 9.64370 10.37117 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.035878 B = 0.004098 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.241531 B = 6831.121363 C = 7499.937747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.047 3.953 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.324 4.324 8 H 0.116 0.884 9 N -0.142 5.142 10 C -0.085 4.085 11 C -0.061 4.061 12 N -0.617 5.617 13 C 0.519 3.481 14 O -0.540 6.540 15 C -0.234 4.234 16 C 0.011 3.989 17 C 0.019 3.981 18 C -0.165 4.165 19 C -0.221 4.221 20 C 0.015 3.985 21 N -0.494 5.494 22 H 0.417 0.583 23 C -0.031 4.031 24 N -0.262 5.262 25 H 0.275 0.725 26 H 0.145 0.855 27 H 0.396 0.604 28 H 0.127 0.873 29 H 0.139 0.861 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.158 0.842 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.120 -14.068 -0.842 14.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.170 4.170 3 Si 0.758 3.242 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.090 4.910 10 C -0.236 4.236 11 C -0.167 4.167 12 N -0.258 5.258 13 C 0.309 3.691 14 O -0.421 6.421 15 C -0.256 4.256 16 C -0.010 4.010 17 C -0.094 4.094 18 C -0.191 4.191 19 C -0.245 4.245 20 C -0.123 4.123 21 N -0.086 5.086 22 H 0.257 0.743 23 C -0.207 4.207 24 N -0.093 5.093 25 H 0.085 0.915 26 H 0.162 0.838 27 H 0.229 0.771 28 H 0.145 0.855 29 H 0.156 0.844 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.176 0.824 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.176 -12.269 -1.086 12.373 hybrid contribution 1.716 -0.052 0.047 1.718 sum 0.540 -12.321 -1.039 12.377 Atomic orbital electron populations 1.70226 1.06174 1.28004 1.35174 1.25641 0.95682 1.00280 0.95431 0.85822 0.79524 0.80030 0.78848 1.19647 1.20000 1.18732 1.19880 0.92099 0.80714 1.52949 0.86631 1.44549 1.04014 1.03643 1.38751 1.21291 0.96850 0.85813 1.19682 1.17305 0.94264 0.81933 1.23152 1.42612 1.08384 1.05197 1.69575 1.17098 0.84691 0.87511 0.79768 1.90802 1.24399 1.75628 1.51313 1.22047 0.99850 0.93652 1.10016 1.20703 0.89681 0.98801 0.91849 1.17923 0.94305 0.97305 0.99846 1.21201 0.91057 1.03807 1.03004 1.20635 0.98936 1.02760 1.02164 1.21907 0.83602 1.02951 1.03805 1.42337 1.07668 1.28894 1.29673 0.74290 1.24117 0.97977 0.90815 1.07763 1.78251 0.90261 1.15155 1.25640 0.91455 0.83770 0.77093 0.85487 0.84358 0.85040 0.85247 0.82439 0.80746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.54 11.83 55.49 0.66 -20.89 16 2 C 0.05 1.21 5.50 -17.50 -0.10 1.12 16 3 Si 0.93 18.91 29.56 -169.99 -5.02 13.89 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.32 -8.60 10.24 -14.82 -0.15 -8.75 16 8 H 0.12 2.74 7.84 -52.48 -0.41 2.33 16 9 N -0.14 -3.90 3.74 -11.41 -0.04 -3.94 16 10 C -0.09 -2.01 11.50 -16.38 -0.19 -2.20 16 11 C -0.06 -1.38 6.90 -83.86 -0.58 -1.96 16 12 N -0.62 -10.81 5.45 -12.63 -0.07 -10.88 16 13 C 0.52 8.84 6.99 -15.02 -0.11 8.73 16 14 O -0.54 -10.87 8.75 5.09 0.04 -10.82 16 15 C -0.23 -2.93 9.85 -39.28 -0.39 -3.31 16 16 C 0.01 0.13 9.96 -39.21 -0.39 -0.26 16 17 C 0.02 0.28 5.37 -83.91 -0.45 -0.17 16 18 C -0.17 -2.34 10.86 -38.98 -0.42 -2.76 16 19 C -0.22 -3.14 10.81 -39.98 -0.43 -3.57 16 20 C 0.02 0.22 11.90 -16.79 -0.20 0.02 16 21 N -0.49 -7.54 3.91 -10.56 -0.04 -7.59 16 22 H 0.42 6.47 7.31 -40.82 -0.30 6.17 16 23 C -0.03 -0.81 10.85 -17.02 -0.18 -1.00 16 24 N -0.26 -7.62 10.41 30.81 0.32 -7.30 16 25 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.14 2.84 8.06 -52.49 -0.42 2.41 16 27 H 0.40 5.39 8.78 -40.82 -0.36 5.03 16 28 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 29 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 30 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 31 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 32 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 33 H 0.18 4.52 5.91 -52.49 -0.31 4.21 16 LS Contribution 292.17 15.07 4.40 4.40 Total: -1.00 -33.60 292.17 -6.39 -39.99 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -3.05 Total: 17.25 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -3.59 Total: -14.12 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: 0.82 Total: -50.59 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.04 Total: -10.82 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.60 -6.39 -39.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783592958.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.270 kcal (2) G-P(sol) polarization free energy of solvation -33.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds