Wall clock time and date at job start Mon Mar 30 2020 00:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31301 * 1 3 3 Si 1.86803 * 119.99959 * 2 1 4 4 H 1.48493 * 109.47215 * 274.87593 * 3 2 1 5 5 H 1.48503 * 109.46989 * 34.87707 * 3 2 1 6 6 H 1.48498 * 109.46924 * 154.87110 * 3 2 1 7 7 C 1.38977 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00032 * 174.30339 * 7 2 1 9 9 N 1.37309 * 120.00402 * 354.57406 * 7 2 1 10 10 C 1.36504 * 126.07098 * 185.40489 * 9 7 2 11 11 C 1.35702 * 107.50594 * 179.97438 * 10 9 7 12 12 N 1.40510 * 126.08979 * 179.97438 * 11 10 9 13 13 C 1.34771 * 120.00342 * 180.02562 * 12 11 10 14 14 O 1.21810 * 120.00003 * 0.02562 * 13 12 11 15 15 C 1.41503 * 120.00036 * 180.02562 * 13 12 11 16 16 C 1.35619 * 119.99934 * 186.66197 * 15 13 12 17 17 C 1.41678 * 120.00143 * 7.77392 * 16 15 13 18 18 C 1.38277 * 126.25675 * 217.98971 * 17 16 15 19 19 C 1.39798 * 107.07642 * 179.89877 * 18 17 16 20 20 C 1.35493 * 107.91381 * 0.36439 * 19 18 17 21 21 N 1.35775 * 108.90535 * 359.77409 * 20 19 18 22 22 H 0.97000 * 125.68775 * 180.02562 * 21 20 19 23 23 C 1.40681 * 107.82753 * 0.02562 * 11 10 9 24 24 N 1.30908 * 108.38759 * 359.75439 * 23 11 10 25 25 H 0.97006 * 119.99918 * 0.02562 * 1 2 3 26 26 H 1.08001 * 126.24620 * 359.93822 * 10 9 7 27 27 H 0.97008 * 119.99417 * 0.02562 * 12 11 10 28 28 H 1.08004 * 119.99844 * 6.65563 * 15 13 12 29 29 H 1.08004 * 119.99733 * 187.76779 * 16 15 13 30 30 H 1.08002 * 126.46243 * 0.02562 * 18 17 16 31 31 H 1.08000 * 126.04336 * 180.13531 * 19 18 17 32 32 H 1.07998 * 125.54841 * 179.74481 * 20 19 18 33 33 H 1.07994 * 125.80431 * 179.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.3915 2.1059 -1.3949 5 1 1.4998 2.6207 0.8006 6 1 3.5922 1.4126 0.5945 7 6 2.0079 -1.2036 -0.0005 8 1 3.0839 -1.2059 -0.0934 9 7 1.3260 -2.3901 0.1114 10 6 1.8845 -3.6302 0.2282 11 6 0.8707 -4.5281 0.3135 12 7 1.0070 -5.9205 0.4444 13 6 -0.0892 -6.7010 0.5182 14 8 -1.1982 -6.1995 0.4710 15 6 0.0482 -8.1031 0.6506 16 6 -1.0470 -8.9006 0.5891 17 6 -2.3031 -8.3525 0.2297 18 6 -3.5299 -8.6986 0.7657 19 6 -4.4935 -7.9134 0.1261 20 6 -3.8582 -7.1251 -0.7743 21 7 -2.5260 -7.3822 -0.7214 22 1 -1.8450 -6.9535 -1.2631 23 6 -0.3413 -3.8170 0.2464 24 7 -0.0663 -2.5424 0.1309 25 1 -0.4850 0.8401 -0.0004 26 1 2.9406 -3.8556 0.2483 27 1 1.8903 -6.3199 0.4816 28 1 1.0253 -8.5382 0.8004 29 1 -0.9616 -9.9535 0.8141 30 1 -3.7095 -9.4351 1.5350 31 1 -5.5569 -7.9343 0.3136 32 1 -4.3339 -6.4091 -1.4281 33 1 -1.3303 -4.2489 0.2872 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783592958.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:47 Heat of formation + Delta-G solvation = 116.485185 kcal Electronic energy + Delta-G solvation = -19856.052054 eV Core-core repulsion = 16692.286165 eV Total energy + Delta-G solvation = -3163.765889 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.15974 -41.50964 -40.06830 -35.98199 -34.94572 -34.56441 -32.24391 -31.64540 -30.11968 -28.77778 -26.86971 -24.66427 -22.84847 -21.97169 -21.28058 -21.10362 -20.51151 -19.43352 -18.72925 -17.44286 -17.11703 -16.73171 -16.01466 -15.71080 -15.44660 -15.06303 -14.95876 -14.68686 -14.48248 -14.06796 -13.71008 -13.47254 -13.28336 -13.01530 -12.94530 -12.84382 -12.75168 -12.09507 -11.81223 -11.00580 -10.83117 -10.75401 -10.60445 -10.10740 -9.52025 -8.60962 -8.49256 -8.34641 -6.25089 -0.12680 1.27298 1.38407 1.56425 1.66927 1.82895 2.07723 2.10130 2.32832 2.45391 2.73461 2.78250 3.00305 3.07304 4.11849 4.24377 4.41847 4.44221 4.58430 4.62350 4.70659 4.74725 4.99108 5.03401 5.15730 5.26923 5.31794 5.47508 5.52649 5.56969 5.95308 6.19460 6.33619 6.37246 6.73612 6.81981 6.84556 7.43808 7.49991 7.68985 8.50530 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.035878 B = 0.004098 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.241531 B = 6831.121363 C = 7499.937747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.005 4.005 3 Si 1.018 2.982 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.244 1.244 7 C -0.357 4.357 8 H 0.140 0.860 9 N -0.169 5.169 10 C -0.084 4.084 11 C -0.042 4.042 12 N -0.613 5.613 13 C 0.515 3.485 14 O -0.574 6.574 15 C -0.239 4.239 16 C 0.026 3.974 17 C -0.001 4.001 18 C -0.177 4.177 19 C -0.232 4.232 20 C -0.008 4.008 21 N -0.503 5.503 22 H 0.411 0.589 23 C -0.055 4.055 24 N -0.313 5.313 25 H 0.276 0.724 26 H 0.185 0.815 27 H 0.418 0.582 28 H 0.171 0.829 29 H 0.186 0.814 30 H 0.155 0.845 31 H 0.146 0.854 32 H 0.168 0.832 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.255 -15.926 -0.296 16.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.217 4.217 3 Si 0.837 3.163 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.167 1.167 7 C -0.488 4.488 8 H 0.157 0.843 9 N 0.062 4.938 10 C -0.235 4.235 11 C -0.149 4.149 12 N -0.257 5.257 13 C 0.308 3.692 14 O -0.457 6.457 15 C -0.261 4.261 16 C 0.006 3.994 17 C -0.114 4.114 18 C -0.201 4.201 19 C -0.256 4.256 20 C -0.146 4.146 21 N -0.095 5.095 22 H 0.250 0.750 23 C -0.231 4.231 24 N -0.145 5.145 25 H 0.086 0.914 26 H 0.202 0.798 27 H 0.255 0.745 28 H 0.189 0.811 29 H 0.203 0.797 30 H 0.173 0.827 31 H 0.163 0.837 32 H 0.186 0.814 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.985 -14.195 -0.535 14.240 hybrid contribution 0.948 0.299 -0.125 1.001 sum 1.933 -13.896 -0.660 14.046 Atomic orbital electron populations 1.70407 1.08474 1.29053 1.37436 1.26867 0.96426 1.04308 0.94083 0.84595 0.78486 0.74173 0.79051 1.18882 1.20218 1.16668 1.20609 0.93351 0.81123 1.53675 0.84295 1.44816 1.03580 1.05106 1.40309 1.22025 0.98823 0.84700 1.17926 1.17362 0.92658 0.84452 1.20381 1.42562 1.10047 1.02853 1.70242 1.17973 0.83821 0.89340 0.78056 1.90808 1.25864 1.76662 1.52319 1.22120 1.02233 0.90664 1.11033 1.21245 0.87923 1.00813 0.89446 1.18561 0.95909 0.97139 0.99756 1.21603 0.90870 1.04245 1.03427 1.20985 1.00021 1.02641 1.01966 1.22289 0.83837 1.03747 1.04688 1.42413 1.07681 1.29267 1.30116 0.74961 1.24140 0.98930 0.90896 1.09098 1.78136 0.92177 1.16807 1.27398 0.91446 0.79757 0.74503 0.81149 0.79737 0.82690 0.83655 0.81421 0.81596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.14 11.83 21.66 0.26 -47.88 16 2 C -0.01 -0.28 5.50 84.95 0.47 0.19 16 3 Si 1.02 38.82 29.56 68.60 2.03 40.85 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 5 H -0.28 -10.51 7.11 99.48 0.71 -9.80 16 6 H -0.24 -8.41 7.11 99.48 0.71 -7.71 16 7 C -0.36 -19.05 10.24 84.01 0.86 -18.18 16 8 H 0.14 6.43 7.84 -2.91 -0.02 6.41 16 9 N -0.17 -9.44 3.74 -190.00 -0.71 -10.15 16 10 C -0.08 -3.91 11.50 83.38 0.96 -2.95 16 11 C -0.04 -1.90 6.90 37.76 0.26 -1.64 16 12 N -0.61 -20.33 5.45 -312.03 -1.70 -22.03 16 13 C 0.51 16.73 6.99 85.05 0.59 17.32 16 14 O -0.57 -23.15 8.75 -4.70 -0.04 -23.19 16 15 C -0.24 -5.12 9.85 22.47 0.22 -4.90 16 16 C 0.03 0.52 9.96 22.51 0.22 0.75 16 17 C 0.00 -0.03 5.37 39.08 0.21 0.18 16 18 C -0.18 -4.71 10.86 22.66 0.25 -4.46 16 19 C -0.23 -6.49 10.81 22.01 0.24 -6.25 16 20 C -0.01 -0.24 11.90 83.45 0.99 0.75 16 21 N -0.50 -15.42 3.91 -187.33 -0.73 -16.15 16 22 H 0.41 13.07 7.31 -92.71 -0.68 12.40 16 23 C -0.06 -2.99 10.85 85.43 0.93 -2.07 16 24 N -0.31 -18.98 10.41 -56.45 -0.59 -19.57 16 25 H 0.28 14.79 8.31 -92.70 -0.77 14.02 16 26 H 0.19 6.75 8.06 -2.91 -0.02 6.72 16 27 H 0.42 10.01 8.78 -92.70 -0.81 9.20 16 28 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 29 H 0.19 1.98 8.06 -2.91 -0.02 1.95 16 30 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 31 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 32 H 0.17 4.33 8.06 -2.91 -0.02 4.30 16 33 H 0.17 9.10 5.91 -2.91 -0.02 9.08 16 Total: -1.00 -77.41 292.17 4.39 -73.02 By element: Atomic # 1 Polarization: 46.69 SS G_CDS: -0.32 Total: 46.37 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 6.20 Total: -21.27 kcal Atomic # 7 Polarization: -112.31 SS G_CDS: -3.47 Total: -115.79 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.04 Total: -23.19 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -77.41 4.39 -73.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783592958.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.505 kcal (2) G-P(sol) polarization free energy of solvation -77.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds