Wall clock time and date at job start Mon Mar 30 2020 00:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86794 * 119.99780 * 2 1 4 4 H 1.48498 * 109.47527 * 274.97945 * 3 2 1 5 5 H 1.48507 * 109.47412 * 34.98011 * 3 2 1 6 6 H 1.48504 * 109.47189 * 154.98194 * 3 2 1 7 7 C 1.38989 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99724 * 174.03891 * 7 2 1 9 9 N 1.37314 * 119.99795 * 354.31110 * 7 2 1 10 10 C 1.36496 * 126.06526 * 185.48951 * 9 7 2 11 11 C 1.35703 * 107.50247 * 179.97438 * 10 9 7 12 12 N 1.40521 * 126.08251 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99295 * 180.02562 * 12 11 10 14 14 O 1.21803 * 120.00417 * 359.97438 * 13 12 11 15 15 C 1.41508 * 119.99261 * 179.97438 * 13 12 11 16 16 C 1.35620 * 119.99538 * 180.02562 * 15 13 12 17 17 C 1.41678 * 119.99828 * 179.97438 * 16 15 13 18 18 C 1.38280 * 126.25708 * 179.97438 * 17 16 15 19 19 C 1.39801 * 107.07797 * 179.97438 * 18 17 16 20 20 C 1.35498 * 107.90961 * 0.02562 * 19 18 17 21 21 N 1.35768 * 108.90785 * 359.75095 * 20 19 18 22 22 H 0.96998 * 125.69353 * 180.24465 * 21 20 19 23 23 C 1.40668 * 107.83090 * 359.97438 * 11 10 9 24 24 N 1.30903 * 108.38608 * 359.73930 * 23 11 10 25 25 H 0.96997 * 120.00133 * 359.97438 * 1 2 3 26 26 H 1.07998 * 126.24828 * 359.94188 * 10 9 7 27 27 H 0.96991 * 120.00036 * 359.97438 * 12 11 10 28 28 H 1.07996 * 120.00196 * 359.97438 * 15 13 12 29 29 H 1.07996 * 120.00267 * 359.97438 * 16 15 13 30 30 H 1.07995 * 126.46434 * 359.97438 * 18 17 16 31 31 H 1.07994 * 126.04105 * 180.02562 * 19 18 17 32 32 H 1.07998 * 125.54665 * 180.02562 * 20 19 18 33 33 H 1.08001 * 125.80997 * 180.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.3891 2.1073 -1.3947 5 1 1.5009 2.6200 0.8027 6 1 3.5931 1.4121 0.5921 7 6 2.0079 -1.2037 0.0005 8 1 3.0835 -1.2061 -0.0966 9 7 1.3265 -2.3898 0.1190 10 6 1.8855 -3.6293 0.2391 11 6 0.8720 -4.5270 0.3307 12 7 1.0091 -5.9188 0.4677 13 6 -0.0868 -6.6991 0.5474 14 8 -1.1960 -6.1980 0.5012 15 6 0.0512 -8.1007 0.6848 16 6 -1.0516 -8.8861 0.7646 17 6 -0.9134 -10.2894 0.9016 18 6 -1.9434 -11.2074 0.9946 19 6 -1.3575 -12.4709 1.1160 20 6 -0.0123 -12.3101 1.0964 21 7 0.2710 -10.9892 0.9613 22 1 1.1594 -10.6026 0.9165 23 6 -0.3402 -3.8163 0.2653 24 7 -0.0657 -2.5420 0.1451 25 1 -0.4850 0.8400 0.0004 26 1 2.9416 -3.8544 0.2573 27 1 1.8924 -6.3178 0.5041 28 1 1.0347 -8.5451 0.7254 29 1 -2.0351 -8.4418 0.7236 30 1 -3.0010 -10.9894 0.9768 31 1 -1.8841 -13.4092 1.2089 32 1 0.7161 -13.1039 1.1713 33 1 -1.3291 -4.2480 0.3115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783592959.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:49 Heat of formation + Delta-G solvation = 114.318159 kcal Electronic energy + Delta-G solvation = -18893.328376 eV Core-core repulsion = 15729.468517 eV Total energy + Delta-G solvation = -3163.859859 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.28231 -39.89970 -38.63852 -34.31360 -33.66914 -33.10811 -31.27447 -30.24870 -28.90838 -27.47990 -25.02576 -23.54546 -21.23197 -20.81502 -20.45699 -19.57550 -19.28372 -17.85389 -17.27258 -16.41989 -15.43744 -15.21636 -14.65103 -14.34335 -14.30255 -13.95817 -13.91396 -13.51708 -13.11593 -12.87717 -12.56757 -12.28260 -12.02854 -11.66428 -11.39447 -11.25937 -10.93683 -10.52050 -10.39769 -10.04705 -9.20152 -9.18944 -9.13322 -8.77793 -8.03642 -7.81612 -6.63514 -6.54655 -4.20156 0.67979 2.37176 2.87551 2.98752 3.00276 3.05893 3.11344 3.49265 3.73399 3.90259 3.96995 4.52091 4.78888 4.82180 4.97401 5.02884 5.03368 5.14316 5.27537 5.58104 5.78213 5.92891 6.16349 6.23457 6.29143 6.54403 6.71428 6.81574 6.94945 7.01335 7.17996 7.24937 7.28384 7.88535 8.23971 8.32900 8.67026 8.93127 9.40469 9.69881 10.41681 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.077654 B = 0.002836 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.485763 B = 9870.350270 C =10216.917072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.324 4.324 8 H 0.116 0.884 9 N -0.143 5.143 10 C -0.086 4.086 11 C -0.059 4.059 12 N -0.620 5.620 13 C 0.532 3.468 14 O -0.546 6.546 15 C -0.224 4.224 16 C 0.009 3.991 17 C 0.015 3.985 18 C -0.150 4.150 19 C -0.207 4.207 20 C 0.006 3.994 21 N -0.546 5.546 22 H 0.416 0.584 23 C -0.031 4.031 24 N -0.262 5.262 25 H 0.275 0.725 26 H 0.145 0.855 27 H 0.395 0.605 28 H 0.110 0.890 29 H 0.151 0.849 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.166 0.834 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.455 -19.382 1.903 19.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.133 0.867 9 N 0.089 4.911 10 C -0.237 4.237 11 C -0.165 4.165 12 N -0.261 5.261 13 C 0.323 3.677 14 O -0.427 6.427 15 C -0.246 4.246 16 C -0.012 4.012 17 C -0.095 4.095 18 C -0.175 4.175 19 C -0.232 4.232 20 C -0.129 4.129 21 N -0.140 5.140 22 H 0.254 0.746 23 C -0.207 4.207 24 N -0.093 5.093 25 H 0.085 0.915 26 H 0.162 0.838 27 H 0.228 0.772 28 H 0.128 0.872 29 H 0.169 0.831 30 H 0.162 0.838 31 H 0.157 0.843 32 H 0.184 0.816 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.148 -17.595 1.747 17.811 hybrid contribution 1.889 -0.305 0.078 1.915 sum 4.037 -17.900 1.825 18.440 Atomic orbital electron populations 1.70224 1.06156 1.27963 1.35238 1.25646 0.95687 1.00270 0.95512 0.85825 0.79492 0.80084 0.78817 1.19676 1.20035 1.18776 1.19861 0.92103 0.80725 1.52897 0.86662 1.44547 1.04030 1.03666 1.38857 1.21270 0.96791 0.85854 1.19740 1.17297 0.94299 0.81867 1.23019 1.42484 1.08190 1.05278 1.70180 1.16749 0.84671 0.86836 0.79490 1.90726 1.25191 1.75434 1.51302 1.21759 0.98632 0.94313 1.09915 1.20800 1.00450 0.88886 0.91061 1.18360 0.85348 0.92263 1.13555 1.21525 0.98217 0.92054 1.05725 1.20873 0.93149 0.98283 1.10869 1.22013 0.97644 0.85225 1.07981 1.42203 1.08309 1.07046 1.56466 0.74622 1.24154 0.98127 0.90803 1.07596 1.78244 0.90243 1.15157 1.25626 0.91473 0.83766 0.77184 0.87161 0.83107 0.83825 0.84347 0.81645 0.80581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.79 11.83 55.50 0.66 -21.13 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.11 16 3 Si 0.93 19.10 29.55 -169.99 -5.02 14.07 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.32 -8.68 10.24 -14.82 -0.15 -8.83 16 8 H 0.12 2.76 7.84 -52.49 -0.41 2.35 16 9 N -0.14 -4.01 3.74 -11.41 -0.04 -4.05 16 10 C -0.09 -2.06 11.49 -16.38 -0.19 -2.24 16 11 C -0.06 -1.40 6.90 -83.86 -0.58 -1.97 16 12 N -0.62 -11.36 5.45 -12.62 -0.07 -11.43 16 13 C 0.53 9.64 7.53 -15.01 -0.11 9.53 16 14 O -0.55 -12.05 13.25 5.10 0.07 -11.98 16 15 C -0.22 -2.92 9.39 -39.27 -0.37 -3.29 16 16 C 0.01 0.11 9.40 -39.21 -0.37 -0.26 16 17 C 0.02 0.16 6.74 -83.90 -0.57 -0.40 16 18 C -0.15 -1.53 10.86 -38.98 -0.42 -1.95 16 19 C -0.21 -1.81 10.81 -39.98 -0.43 -2.24 16 20 C 0.01 0.05 11.90 -16.79 -0.20 -0.15 16 21 N -0.55 -4.55 5.94 -10.56 -0.06 -4.61 16 22 H 0.42 2.47 7.87 -40.82 -0.32 2.15 16 23 C -0.03 -0.85 10.85 -17.03 -0.18 -1.03 16 24 N -0.26 -7.77 10.41 30.80 0.32 -7.45 16 25 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.14 2.88 8.06 -52.49 -0.42 2.45 16 27 H 0.40 5.51 8.78 -40.82 -0.36 5.15 16 28 H 0.11 1.04 6.93 -52.49 -0.36 0.67 16 29 H 0.15 1.98 7.46 -52.49 -0.39 1.59 16 30 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 31 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.17 0.70 8.06 -52.49 -0.42 0.27 16 33 H 0.18 4.73 5.91 -52.49 -0.31 4.42 16 LS Contribution 298.44 15.07 4.50 4.50 Total: -1.00 -35.32 298.44 -6.31 -41.63 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -2.98 Total: 12.19 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -3.67 Total: -11.74 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.80 Total: -48.67 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.07 Total: -11.98 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -35.32 -6.31 -41.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783592959.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.950 kcal (2) G-P(sol) polarization free energy of solvation -35.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds