Wall clock time and date at job start Mon Mar 30 2020 00:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86794 * 119.99780 * 2 1 4 4 H 1.48498 * 109.47527 * 274.97945 * 3 2 1 5 5 H 1.48507 * 109.47412 * 34.98011 * 3 2 1 6 6 H 1.48504 * 109.47189 * 154.98194 * 3 2 1 7 7 C 1.38989 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99724 * 174.03891 * 7 2 1 9 9 N 1.37314 * 119.99795 * 354.31110 * 7 2 1 10 10 C 1.36496 * 126.06526 * 185.48951 * 9 7 2 11 11 C 1.35703 * 107.50247 * 179.97438 * 10 9 7 12 12 N 1.40521 * 126.08251 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99295 * 180.02562 * 12 11 10 14 14 O 1.21803 * 120.00417 * 359.97438 * 13 12 11 15 15 C 1.41508 * 119.99261 * 179.97438 * 13 12 11 16 16 C 1.35620 * 119.99538 * 180.02562 * 15 13 12 17 17 C 1.41678 * 119.99828 * 179.97438 * 16 15 13 18 18 C 1.38280 * 126.25708 * 179.97438 * 17 16 15 19 19 C 1.39801 * 107.07797 * 179.97438 * 18 17 16 20 20 C 1.35498 * 107.90961 * 0.02562 * 19 18 17 21 21 N 1.35768 * 108.90785 * 359.75095 * 20 19 18 22 22 H 0.96998 * 125.69353 * 180.24465 * 21 20 19 23 23 C 1.40668 * 107.83090 * 359.97438 * 11 10 9 24 24 N 1.30903 * 108.38608 * 359.73930 * 23 11 10 25 25 H 0.96997 * 120.00133 * 359.97438 * 1 2 3 26 26 H 1.07998 * 126.24828 * 359.94188 * 10 9 7 27 27 H 0.96991 * 120.00036 * 359.97438 * 12 11 10 28 28 H 1.07996 * 120.00196 * 359.97438 * 15 13 12 29 29 H 1.07996 * 120.00267 * 359.97438 * 16 15 13 30 30 H 1.07995 * 126.46434 * 359.97438 * 18 17 16 31 31 H 1.07994 * 126.04105 * 180.02562 * 19 18 17 32 32 H 1.07998 * 125.54665 * 180.02562 * 20 19 18 33 33 H 1.08001 * 125.80997 * 180.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.3891 2.1073 -1.3947 5 1 1.5009 2.6200 0.8027 6 1 3.5931 1.4121 0.5921 7 6 2.0079 -1.2037 0.0005 8 1 3.0835 -1.2061 -0.0966 9 7 1.3265 -2.3898 0.1190 10 6 1.8855 -3.6293 0.2391 11 6 0.8720 -4.5270 0.3307 12 7 1.0091 -5.9188 0.4677 13 6 -0.0868 -6.6991 0.5474 14 8 -1.1960 -6.1980 0.5012 15 6 0.0512 -8.1007 0.6848 16 6 -1.0516 -8.8861 0.7646 17 6 -0.9134 -10.2894 0.9016 18 6 -1.9434 -11.2074 0.9946 19 6 -1.3575 -12.4709 1.1160 20 6 -0.0123 -12.3101 1.0964 21 7 0.2710 -10.9892 0.9613 22 1 1.1594 -10.6026 0.9165 23 6 -0.3402 -3.8163 0.2653 24 7 -0.0657 -2.5420 0.1451 25 1 -0.4850 0.8400 0.0004 26 1 2.9416 -3.8544 0.2573 27 1 1.8924 -6.3178 0.5041 28 1 1.0347 -8.5451 0.7254 29 1 -2.0351 -8.4418 0.7236 30 1 -3.0010 -10.9894 0.9768 31 1 -1.8841 -13.4092 1.2089 32 1 0.7161 -13.1039 1.1713 33 1 -1.3291 -4.2480 0.3115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783592959.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:49 Heat of formation + Delta-G solvation = 89.145735 kcal Electronic energy + Delta-G solvation = -18894.419934 eV Core-core repulsion = 15729.468517 eV Total energy + Delta-G solvation = -3164.951417 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.02162 -41.67377 -40.27934 -35.97619 -34.95566 -34.76278 -32.25120 -31.96907 -30.23163 -28.94020 -26.84427 -24.76964 -22.84649 -22.03318 -21.36580 -21.15019 -20.59327 -19.36103 -18.42867 -17.80323 -17.37903 -16.76234 -16.08225 -15.84994 -15.22866 -15.20888 -14.97787 -14.91657 -14.72139 -14.47455 -13.50866 -13.32178 -13.25458 -13.16221 -12.93470 -12.88645 -12.83520 -12.07849 -11.85131 -11.26475 -11.00857 -10.84902 -10.73194 -10.10100 -9.87017 -8.72800 -8.47805 -8.38701 -6.23878 -0.30365 1.26780 1.39624 1.55283 1.58503 1.78176 2.03513 2.08633 2.32817 2.38092 2.43015 2.79936 2.98163 3.08401 3.98235 4.03905 4.40166 4.43343 4.46649 4.47122 4.54974 4.65383 4.96904 5.00198 5.04131 5.24418 5.30116 5.38606 5.44528 5.51371 5.96246 5.97103 6.09205 6.33192 6.67570 6.73811 6.81693 7.43786 7.48918 7.68754 8.52285 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.077654 B = 0.002836 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.485763 B = 9870.350270 C =10216.917072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.008 4.008 3 Si 1.021 2.979 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.243 1.243 7 C -0.355 4.355 8 H 0.142 0.858 9 N -0.169 5.169 10 C -0.082 4.082 11 C -0.044 4.044 12 N -0.614 5.614 13 C 0.532 3.468 14 O -0.595 6.595 15 C -0.245 4.245 16 C 0.035 3.965 17 C -0.021 4.021 18 C -0.154 4.154 19 C -0.229 4.229 20 C 0.032 3.968 21 N -0.538 5.538 22 H 0.429 0.571 23 C -0.062 4.062 24 N -0.312 5.312 25 H 0.276 0.724 26 H 0.189 0.811 27 H 0.419 0.581 28 H 0.152 0.848 29 H 0.133 0.867 30 H 0.147 0.853 31 H 0.157 0.843 32 H 0.206 0.794 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.372 -21.861 2.219 22.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.166 1.166 7 C -0.486 4.486 8 H 0.159 0.841 9 N 0.062 4.938 10 C -0.233 4.233 11 C -0.151 4.151 12 N -0.258 5.258 13 C 0.325 3.675 14 O -0.479 6.479 15 C -0.267 4.267 16 C 0.014 3.986 17 C -0.130 4.130 18 C -0.179 4.179 19 C -0.253 4.253 20 C -0.104 4.104 21 N -0.133 5.133 22 H 0.269 0.731 23 C -0.237 4.237 24 N -0.144 5.144 25 H 0.086 0.914 26 H 0.206 0.794 27 H 0.257 0.743 28 H 0.170 0.830 29 H 0.150 0.850 30 H 0.165 0.835 31 H 0.175 0.825 32 H 0.223 0.777 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 5.118 -20.125 2.064 20.868 hybrid contribution 0.877 0.067 0.005 0.880 sum 5.996 -20.058 2.069 21.037 Atomic orbital electron populations 1.70411 1.08532 1.29128 1.37289 1.26927 0.96469 1.04455 0.94118 0.84564 0.78473 0.74016 0.79033 1.18905 1.20210 1.16565 1.20631 0.93422 0.81019 1.53496 0.84106 1.44854 1.03573 1.05218 1.40134 1.22015 0.98792 0.84597 1.17862 1.17386 0.92800 0.84365 1.20529 1.42399 1.09829 1.03011 1.70568 1.17565 0.83664 0.88674 0.77555 1.90707 1.27117 1.76687 1.53373 1.21551 1.00815 0.91115 1.13188 1.20773 0.99593 0.90019 0.88238 1.18159 0.86768 0.91458 1.16653 1.21869 0.98677 0.93015 1.04387 1.21230 0.94041 0.98380 1.11618 1.22732 0.98119 0.85465 1.04095 1.42250 1.08245 1.07263 1.55567 0.73131 1.24189 0.99139 0.91078 1.09268 1.78132 0.92240 1.16570 1.27443 0.91386 0.79385 0.74339 0.83024 0.84967 0.83533 0.82543 0.77678 0.81630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.72 11.83 21.66 0.26 -48.47 16 2 C -0.01 -0.44 5.50 84.95 0.47 0.03 16 3 Si 1.02 39.14 29.55 68.60 2.03 41.16 16 4 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 5 H -0.28 -10.55 7.11 99.48 0.71 -9.85 16 6 H -0.24 -8.39 7.11 99.48 0.71 -7.68 16 7 C -0.35 -19.13 10.24 84.01 0.86 -18.27 16 8 H 0.14 6.55 7.84 -2.91 -0.02 6.53 16 9 N -0.17 -9.62 3.74 -190.00 -0.71 -10.33 16 10 C -0.08 -3.91 11.49 83.38 0.96 -2.96 16 11 C -0.04 -2.12 6.90 37.75 0.26 -1.86 16 12 N -0.61 -22.01 5.45 -312.03 -1.70 -23.71 16 13 C 0.53 19.36 7.53 85.05 0.64 20.00 16 14 O -0.59 -27.52 13.25 -4.68 -0.06 -27.58 16 15 C -0.25 -6.07 9.39 22.47 0.21 -5.86 16 16 C 0.03 0.84 9.40 22.51 0.21 1.06 16 17 C -0.02 -0.40 6.74 39.08 0.26 -0.14 16 18 C -0.15 -2.87 10.86 22.66 0.25 -2.62 16 19 C -0.23 -3.26 10.81 22.01 0.24 -3.02 16 20 C 0.03 0.34 11.90 83.45 0.99 1.33 16 21 N -0.54 -7.03 5.94 -187.32 -1.11 -8.15 16 22 H 0.43 3.33 7.87 -92.71 -0.73 2.60 16 23 C -0.06 -3.51 10.85 85.42 0.93 -2.58 16 24 N -0.31 -19.44 10.41 -56.46 -0.59 -20.03 16 25 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16 26 H 0.19 6.97 8.06 -2.91 -0.02 6.95 16 27 H 0.42 10.69 8.78 -92.72 -0.81 9.87 16 28 H 0.15 2.37 6.93 -2.91 -0.02 2.35 16 29 H 0.13 3.64 7.46 -2.91 -0.02 3.62 16 30 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 32 H 0.21 0.50 8.06 -2.91 -0.02 0.48 16 33 H 0.17 9.60 5.91 -2.91 -0.02 9.58 16 Total: -1.00 -82.37 298.44 4.02 -78.35 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: -0.37 Total: 33.64 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 6.28 Total: -14.89 kcal Atomic # 7 Polarization: -106.83 SS G_CDS: -3.86 Total: -110.68 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.06 Total: -27.58 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.16 kcal Total: -82.37 4.02 -78.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783592959.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.496 kcal (2) G-P(sol) polarization free energy of solvation -82.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds