Wall clock time and date at job start Mon Mar 30 2020 01:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38159 * 119.55273 * 2 1 4 4 C 1.39810 * 118.99578 * 180.02562 * 3 2 1 5 5 C 1.48118 * 120.92381 * 180.02562 * 4 3 2 6 6 O 1.21552 * 119.99675 * 359.97003 * 5 4 3 7 7 N 1.34778 * 120.00420 * 179.97438 * 5 4 3 8 8 C 1.40498 * 119.99985 * 180.02562 * 7 5 4 9 9 C 1.40663 * 126.08763 * 359.68223 * 8 7 5 10 10 N 1.30903 * 108.38458 * 179.81839 * 9 8 7 11 11 N 1.40067 * 108.41392 * 0.44739 * 10 9 8 12 12 C 1.37318 * 126.06559 * 179.67988 * 11 10 9 13 13 H 1.08003 * 119.99874 * 180.02562 * 12 11 10 14 14 C 1.38992 * 119.99961 * 0.04039 * 12 11 10 15 15 N 1.31292 * 120.00101 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99732 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46907 * 90.00121 * 16 14 12 18 18 H 1.48505 * 109.47393 * 209.99941 * 16 14 12 19 19 H 1.48498 * 109.47464 * 329.99895 * 16 14 12 20 20 C 1.35706 * 126.08368 * 180.02562 * 8 7 5 21 21 C 1.39849 * 118.15717 * 0.02562 * 4 3 2 22 22 C 1.38114 * 119.00080 * 359.97438 * 21 4 3 23 23 N 1.31805 * 119.54961 * 180.02562 * 2 1 3 24 24 H 1.09008 * 109.47245 * 269.98376 * 1 2 3 25 25 H 1.09008 * 109.47078 * 29.97528 * 1 2 3 26 26 H 1.08993 * 109.47357 * 149.97874 * 1 2 3 27 27 H 1.07999 * 120.50100 * 0.04279 * 3 2 1 28 28 H 0.96999 * 119.99203 * 359.97438 * 7 5 4 29 29 H 1.08001 * 125.80864 * 359.97039 * 9 8 7 30 30 H 0.97000 * 120.00205 * 180.02562 * 15 14 12 31 31 H 1.08002 * 126.24814 * 359.97012 * 20 8 7 32 32 H 1.08004 * 120.50301 * 180.02562 * 21 4 3 33 33 H 1.07999 * 119.55714 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2018 0.0000 4 6 3.5865 1.1883 -0.0005 5 6 4.3599 2.4514 0.0000 6 8 3.7795 3.5194 0.0004 7 7 5.7073 2.4167 0.0000 8 6 6.4409 3.6149 0.0010 9 6 5.9041 4.9151 -0.0041 10 7 6.8947 5.7708 0.0028 11 7 8.0982 5.0544 0.0022 12 6 9.3607 5.5947 0.0020 13 1 10.2251 4.9472 0.0011 14 6 9.5259 6.9747 0.0032 15 7 8.4750 7.7617 0.0051 16 14 11.2432 7.7096 0.0037 17 1 11.6981 7.9056 -1.3963 18 1 11.2214 9.0185 0.7049 19 1 12.1755 6.7891 0.7028 20 6 7.7936 3.7240 0.0007 21 6 4.2344 -0.0511 -0.0016 22 6 3.4741 -1.2041 -0.0016 23 7 2.1570 -1.1466 -0.0005 24 1 -0.3634 -0.0003 1.0277 25 1 -0.3634 0.8903 -0.5135 26 1 -0.3634 -0.8897 -0.5141 27 1 1.6493 2.1377 0.0007 28 1 6.1704 1.5644 0.0000 29 1 4.8534 5.1649 -0.0101 30 1 8.5904 8.7249 0.0056 31 1 8.5001 2.9071 -0.0001 32 1 5.3130 -0.1058 -0.0017 33 1 3.9652 -2.1660 -0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789919148.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:27 Heat of formation + Delta-G solvation = 84.860185 kcal Electronic energy + Delta-G solvation = -19293.716367 eV Core-core repulsion = 16128.579115 eV Total energy + Delta-G solvation = -3165.137252 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.66417 -39.73221 -38.38639 -34.43274 -33.52709 -32.87346 -32.40973 -30.28215 -27.98297 -27.73784 -25.32887 -24.02701 -22.87969 -21.10544 -20.31750 -19.47024 -17.82886 -17.32415 -16.45335 -15.69318 -15.52293 -15.10153 -15.00928 -14.97480 -14.28840 -14.03313 -13.72755 -13.22613 -13.21560 -12.94348 -12.57598 -12.43575 -11.81167 -11.71859 -11.49082 -11.30169 -11.01198 -10.56600 -10.30213 -9.90142 -9.89269 -9.30392 -9.22512 -9.11677 -8.87264 -8.11996 -6.77437 -6.60437 -4.27788 0.68806 0.94938 2.85250 3.02115 3.03280 3.07745 3.39024 3.55300 3.82156 3.83664 4.10720 4.39083 4.53614 4.58211 4.82707 4.92349 4.96809 4.97776 5.24696 5.36184 5.41100 5.59643 5.76506 5.86851 5.98063 6.18770 6.37951 6.49640 6.82029 6.89120 7.02586 7.17217 7.78167 7.80162 8.06292 8.19867 8.54002 8.73209 9.31678 9.60589 10.35413 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.057589 B = 0.003354 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.089818 B = 8346.066577 C = 8817.009734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.121 3.879 3 C -0.118 4.118 4 C -0.066 4.066 5 C 0.535 3.465 6 O -0.526 6.526 7 N -0.610 5.610 8 C -0.065 4.065 9 C -0.029 4.029 10 N -0.260 5.260 11 N -0.140 5.140 12 C -0.322 4.322 13 H 0.117 0.883 14 C 0.046 3.954 15 N -0.768 5.768 16 Si 0.936 3.064 17 H -0.270 1.270 18 H -0.275 1.275 19 H -0.264 1.264 20 C -0.082 4.082 21 C -0.155 4.155 22 C 0.100 3.900 23 N -0.478 5.478 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.148 0.852 28 H 0.397 0.603 29 H 0.177 0.823 30 H 0.276 0.724 31 H 0.147 0.853 32 H 0.139 0.861 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.940 -14.318 -0.009 15.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.016 4.016 3 C -0.139 4.139 4 C -0.078 4.078 5 C 0.321 3.679 6 O -0.403 6.403 7 N -0.252 5.252 8 C -0.170 4.170 9 C -0.205 4.205 10 N -0.091 5.091 11 N 0.093 4.907 12 C -0.455 4.455 13 H 0.135 0.865 14 C -0.172 4.172 15 N -0.394 5.394 16 Si 0.759 3.241 17 H -0.195 1.195 18 H -0.200 1.200 19 H -0.188 1.188 20 C -0.234 4.234 21 C -0.176 4.176 22 C -0.057 4.057 23 N -0.189 5.189 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.166 0.834 28 H 0.231 0.769 29 H 0.193 0.807 30 H 0.086 0.914 31 H 0.164 0.836 32 H 0.156 0.844 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.549 -12.807 0.002 14.866 hybrid contribution 1.467 -0.343 0.004 1.506 sum -6.082 -13.149 0.006 14.487 Atomic orbital electron populations 1.20723 0.88411 1.03637 1.03265 1.21288 0.97245 0.87865 0.95211 1.22128 0.93377 1.00084 0.98297 1.20498 0.94560 0.93682 0.99027 1.17950 0.82000 0.88216 0.79694 1.90679 1.69504 1.30193 1.49963 1.42359 1.05006 1.07780 1.70026 1.17244 0.89801 0.85567 1.24409 1.24133 0.99777 0.88992 1.07584 1.78273 0.87601 1.17474 1.25759 1.44574 1.05614 1.01809 1.38718 1.19903 0.80447 0.91770 1.53364 0.86516 1.25661 0.99882 0.96184 0.95428 1.70212 1.29434 1.04839 1.34935 0.85810 0.80328 0.78904 0.79010 1.19542 1.20039 1.18775 1.21252 0.93829 0.88328 1.19950 1.22351 1.01579 0.92716 1.00928 1.22670 0.89191 0.98305 0.95542 1.67380 1.10290 1.29503 1.11691 0.90257 0.90408 0.90396 0.83417 0.76876 0.80652 0.91368 0.83574 0.84350 0.82220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 10.17 36.01 0.37 -0.49 16 2 C 0.12 1.41 6.78 -82.63 -0.56 0.85 16 3 C -0.12 -1.54 9.31 -39.02 -0.36 -1.91 16 4 C -0.07 -0.93 5.91 -104.65 -0.62 -1.55 16 5 C 0.54 9.63 7.77 -12.20 -0.09 9.53 16 6 O -0.53 -11.35 13.59 5.32 0.07 -11.28 16 7 N -0.61 -10.84 5.42 -10.78 -0.06 -10.90 16 8 C -0.06 -1.48 6.90 -83.87 -0.58 -2.06 16 9 C -0.03 -0.77 10.85 -17.03 -0.18 -0.96 16 10 N -0.26 -7.53 10.39 30.80 0.32 -7.21 16 11 N -0.14 -3.81 3.74 -11.40 -0.04 -3.85 16 12 C -0.32 -8.43 10.25 -14.81 -0.15 -8.58 16 13 H 0.12 2.71 7.83 -52.48 -0.41 2.30 16 14 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 15 N -0.77 -21.28 11.81 55.50 0.66 -20.63 16 16 Si 0.94 18.68 29.55 -169.99 -5.02 13.66 16 17 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 18 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 20 C -0.08 -1.91 11.49 -16.39 -0.19 -2.10 16 21 C -0.16 -1.70 9.62 -39.02 -0.38 -2.07 16 22 C 0.10 1.03 11.17 -17.60 -0.20 0.83 16 23 N -0.48 -5.73 10.25 -9.53 -0.10 -5.82 16 24 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 25 H 0.08 0.55 8.08 -51.92 -0.42 0.13 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.15 1.89 7.74 -52.49 -0.41 1.48 16 28 H 0.40 5.36 6.97 -40.82 -0.28 5.08 16 29 H 0.18 4.57 5.92 -52.49 -0.31 4.25 16 30 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.15 2.79 8.06 -52.49 -0.42 2.37 16 32 H 0.14 1.14 6.54 -52.48 -0.34 0.80 16 33 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 295.56 15.07 4.45 4.45 Total: -1.00 -33.78 295.56 -5.76 -39.54 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -3.00 Total: 9.48 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -3.04 Total: -7.43 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.78 Total: -48.42 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.07 Total: -11.28 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.66 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.78 -5.76 -39.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789919148.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.402 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds