Wall clock time and date at job start Mon Mar 30 2020 01:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38159 * 119.55273 * 2 1 4 4 C 1.39810 * 118.99578 * 180.02562 * 3 2 1 5 5 C 1.48118 * 120.92381 * 180.02562 * 4 3 2 6 6 O 1.21552 * 119.99675 * 359.97003 * 5 4 3 7 7 N 1.34778 * 120.00420 * 179.97438 * 5 4 3 8 8 C 1.40498 * 119.99985 * 180.02562 * 7 5 4 9 9 C 1.40663 * 126.08763 * 359.68223 * 8 7 5 10 10 N 1.30903 * 108.38458 * 179.81839 * 9 8 7 11 11 N 1.40067 * 108.41392 * 0.44739 * 10 9 8 12 12 C 1.37318 * 126.06559 * 179.67988 * 11 10 9 13 13 H 1.08003 * 119.99874 * 180.02562 * 12 11 10 14 14 C 1.38992 * 119.99961 * 0.04039 * 12 11 10 15 15 N 1.31292 * 120.00101 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99732 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46907 * 90.00121 * 16 14 12 18 18 H 1.48505 * 109.47393 * 209.99941 * 16 14 12 19 19 H 1.48498 * 109.47464 * 329.99895 * 16 14 12 20 20 C 1.35706 * 126.08368 * 180.02562 * 8 7 5 21 21 C 1.39849 * 118.15717 * 0.02562 * 4 3 2 22 22 C 1.38114 * 119.00080 * 359.97438 * 21 4 3 23 23 N 1.31805 * 119.54961 * 180.02562 * 2 1 3 24 24 H 1.09008 * 109.47245 * 269.98376 * 1 2 3 25 25 H 1.09008 * 109.47078 * 29.97528 * 1 2 3 26 26 H 1.08993 * 109.47357 * 149.97874 * 1 2 3 27 27 H 1.07999 * 120.50100 * 0.04279 * 3 2 1 28 28 H 0.96999 * 119.99203 * 359.97438 * 7 5 4 29 29 H 1.08001 * 125.80864 * 359.97039 * 9 8 7 30 30 H 0.97000 * 120.00205 * 180.02562 * 15 14 12 31 31 H 1.08002 * 126.24814 * 359.97012 * 20 8 7 32 32 H 1.08004 * 120.50301 * 180.02562 * 21 4 3 33 33 H 1.07999 * 119.55714 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2018 0.0000 4 6 3.5865 1.1883 -0.0005 5 6 4.3599 2.4514 0.0000 6 8 3.7795 3.5194 0.0004 7 7 5.7073 2.4167 0.0000 8 6 6.4409 3.6149 0.0010 9 6 5.9041 4.9151 -0.0041 10 7 6.8947 5.7708 0.0028 11 7 8.0982 5.0544 0.0022 12 6 9.3607 5.5947 0.0020 13 1 10.2251 4.9472 0.0011 14 6 9.5259 6.9747 0.0032 15 7 8.4750 7.7617 0.0051 16 14 11.2432 7.7096 0.0037 17 1 11.6981 7.9056 -1.3963 18 1 11.2214 9.0185 0.7049 19 1 12.1755 6.7891 0.7028 20 6 7.7936 3.7240 0.0007 21 6 4.2344 -0.0511 -0.0016 22 6 3.4741 -1.2041 -0.0016 23 7 2.1570 -1.1466 -0.0005 24 1 -0.3634 -0.0003 1.0277 25 1 -0.3634 0.8903 -0.5135 26 1 -0.3634 -0.8897 -0.5141 27 1 1.6493 2.1377 0.0007 28 1 6.1704 1.5644 0.0000 29 1 4.8534 5.1649 -0.0101 30 1 8.5904 8.7249 0.0056 31 1 8.5001 2.9071 -0.0001 32 1 5.3130 -0.1058 -0.0017 33 1 3.9652 -2.1660 -0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789919148.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:27 Heat of formation + Delta-G solvation = 61.181885 kcal Electronic energy + Delta-G solvation = -19294.743135 eV Core-core repulsion = 16128.579115 eV Total energy + Delta-G solvation = -3166.164020 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.96571 -41.27300 -39.88485 -36.08477 -35.16667 -33.99467 -33.38262 -32.23877 -29.73382 -28.56566 -27.07742 -25.38861 -23.80056 -22.92305 -21.81467 -21.20046 -19.41888 -18.72998 -17.61677 -17.41114 -16.69077 -16.49272 -16.33122 -16.26470 -15.59539 -15.42195 -14.99787 -14.98939 -14.74074 -14.20037 -13.50102 -13.35672 -13.31936 -13.08153 -12.92644 -12.87669 -12.66187 -12.09043 -11.94206 -11.19067 -11.06382 -10.94559 -10.84372 -10.50145 -10.13424 -9.96140 -8.59018 -8.48512 -6.26458 -0.36069 0.07652 1.24886 1.40107 1.57841 1.60824 1.87837 1.93525 2.20179 2.44582 2.84596 2.84912 3.08151 3.34884 3.57546 3.74976 3.95656 4.03271 4.38330 4.42644 4.55880 4.62037 4.74306 4.79775 4.95177 4.97190 5.00285 5.13191 5.18043 5.26154 5.36186 5.64399 5.93347 6.26115 6.59893 6.70508 6.91155 7.21839 7.43383 7.63928 8.50818 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.057589 B = 0.003354 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.089818 B = 8346.066577 C = 8817.009734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.119 3.881 3 C -0.132 4.132 4 C -0.086 4.086 5 C 0.537 3.463 6 O -0.569 6.569 7 N -0.601 5.601 8 C -0.051 4.051 9 C -0.058 4.058 10 N -0.310 5.310 11 N -0.166 5.166 12 C -0.353 4.353 13 H 0.144 0.856 14 C -0.007 4.007 15 N -0.824 5.824 16 Si 1.020 2.980 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.243 1.243 20 C -0.076 4.076 21 C -0.144 4.144 22 C 0.105 3.895 23 N -0.489 5.489 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.140 0.860 28 H 0.421 0.579 29 H 0.167 0.833 30 H 0.277 0.723 31 H 0.193 0.807 32 H 0.169 0.831 33 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.551 -17.436 0.023 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.018 4.018 3 C -0.153 4.153 4 C -0.097 4.097 5 C 0.325 3.675 6 O -0.449 6.449 7 N -0.246 5.246 8 C -0.157 4.157 9 C -0.233 4.233 10 N -0.142 5.142 11 N 0.065 4.935 12 C -0.484 4.484 13 H 0.161 0.839 14 C -0.219 4.219 15 N -0.452 5.452 16 Si 0.839 3.161 17 H -0.189 1.189 18 H -0.203 1.203 19 H -0.166 1.166 20 C -0.226 4.226 21 C -0.164 4.164 22 C -0.052 4.052 23 N -0.199 5.199 24 H 0.109 0.891 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.157 0.843 28 H 0.259 0.741 29 H 0.184 0.816 30 H 0.086 0.914 31 H 0.210 0.790 32 H 0.186 0.814 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -6.171 -15.998 0.034 17.147 hybrid contribution 0.883 0.428 -0.007 0.981 sum -5.288 -15.570 0.027 16.443 Atomic orbital electron populations 1.20813 0.86378 1.04516 1.04242 1.21664 0.98658 0.87138 0.94371 1.22198 0.93317 1.00619 0.99178 1.20235 0.94628 0.92839 1.02007 1.18633 0.81954 0.89169 0.77715 1.90661 1.70359 1.32382 1.51449 1.42225 1.04955 1.07174 1.70212 1.17305 0.90082 0.86219 1.22101 1.24176 0.99215 0.90823 1.09099 1.78169 0.88996 1.19511 1.27520 1.44874 1.05469 1.03059 1.40049 1.20668 0.80914 0.92926 1.53903 0.83893 1.26909 1.04524 0.96375 0.94078 1.70397 1.32498 1.05168 1.37116 0.84575 0.74498 0.77786 0.79242 1.18888 1.20301 1.16590 1.22017 0.94692 0.88198 1.17706 1.22651 1.03155 0.91381 0.99211 1.23336 0.88664 0.99611 0.93583 1.67497 1.11331 1.29403 1.11715 0.89130 0.89484 0.89574 0.84257 0.74086 0.81625 0.91354 0.79043 0.81365 0.78330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.53 10.17 71.24 0.72 -0.81 16 2 C 0.12 2.56 6.78 42.54 0.29 2.85 16 3 C -0.13 -3.39 9.31 22.63 0.21 -3.18 16 4 C -0.09 -2.31 5.91 -19.88 -0.12 -2.42 16 5 C 0.54 19.23 7.77 86.87 0.67 19.91 16 6 O -0.57 -25.50 13.59 -3.88 -0.05 -25.55 16 7 N -0.60 -20.56 5.42 -306.29 -1.66 -22.22 16 8 C -0.05 -2.32 6.90 37.76 0.26 -2.06 16 9 C -0.06 -3.18 10.85 85.42 0.93 -2.25 16 10 N -0.31 -18.74 10.39 -56.46 -0.59 -19.32 16 11 N -0.17 -9.14 3.74 -189.99 -0.71 -9.85 16 12 C -0.35 -18.43 10.25 84.01 0.86 -17.57 16 13 H 0.14 6.39 7.83 -2.91 -0.02 6.37 16 14 C -0.01 -0.37 5.50 84.95 0.47 0.10 16 15 N -0.82 -47.45 11.81 21.66 0.26 -47.20 16 16 Si 1.02 38.09 29.55 68.60 2.03 40.12 16 17 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 18 H -0.28 -10.34 7.11 99.48 0.71 -9.63 16 19 H -0.24 -8.16 7.11 99.48 0.71 -7.45 16 20 C -0.08 -3.42 11.49 83.38 0.96 -2.46 16 21 C -0.14 -2.67 9.62 22.63 0.22 -2.45 16 22 C 0.10 1.75 11.17 84.66 0.95 2.70 16 23 N -0.49 -10.31 10.25 -184.06 -1.89 -12.19 16 24 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.09 1.12 8.08 -2.38 -0.02 1.10 16 26 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.14 3.70 7.74 -2.91 -0.02 3.68 16 28 H 0.42 10.05 6.97 -92.71 -0.65 9.41 16 29 H 0.17 9.22 5.92 -2.91 -0.02 9.21 16 30 H 0.28 14.65 8.31 -92.71 -0.77 13.88 16 31 H 0.19 6.63 8.06 -2.91 -0.02 6.61 16 32 H 0.17 2.00 6.54 -2.91 -0.02 1.98 16 33 H 0.20 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -77.90 295.56 4.32 -73.57 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.52 Total: 30.30 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 6.42 Total: -7.66 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -4.59 Total: -110.78 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.05 Total: -25.55 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Total: -77.90 4.32 -73.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789919148.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.754 kcal (2) G-P(sol) polarization free energy of solvation -77.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds