Wall clock time and date at job start Mon Mar 30 2020 01:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28516 * 124.43236 * 2 1 4 4 C 1.31122 * 109.07420 * 179.97438 * 3 2 1 5 5 C 1.40995 * 105.77112 * 0.22012 * 4 3 2 6 6 C 1.47667 * 127.24676 * 179.73914 * 5 4 3 7 7 O 1.21582 * 119.99757 * 352.61748 * 6 5 4 8 8 N 1.34772 * 119.99882 * 172.61687 * 6 5 4 9 9 C 1.36970 * 120.00108 * 176.68107 * 8 6 5 10 10 H 1.07998 * 119.99799 * 108.92500 * 9 8 6 11 11 C 1.38951 * 120.00183 * 288.93181 * 9 8 6 12 12 N 1.31390 * 119.99862 * 323.97545 * 11 9 8 13 13 Si 1.86801 * 119.99944 * 143.97544 * 11 9 8 14 14 H 1.48495 * 109.47239 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47094 * 120.00203 * 13 11 9 16 16 H 1.48497 * 109.47093 * 240.00029 * 13 11 9 17 17 C 1.39714 * 120.00175 * 356.68083 * 8 6 5 18 18 C 1.38975 * 120.08084 * 257.25918 * 17 8 6 19 19 C 1.38081 * 119.91744 * 179.81255 * 18 17 8 20 20 C 1.38308 * 120.08136 * 0.44040 * 19 18 17 21 21 C 1.38315 * 120.15920 * 359.79204 * 20 19 18 22 22 C 1.38079 * 120.07776 * 359.97438 * 21 20 19 23 23 N 1.28585 * 124.43328 * 179.97438 * 2 1 3 24 24 H 1.09009 * 109.46764 * 90.03013 * 1 2 3 25 25 H 1.08995 * 109.47238 * 210.02359 * 1 2 3 26 26 H 1.08992 * 109.47599 * 330.02953 * 1 2 3 27 27 H 1.08002 * 127.11276 * 179.97438 * 4 3 2 28 28 H 0.96995 * 120.00020 * 185.00970 * 12 11 9 29 29 H 1.07995 * 120.04130 * 359.97438 * 18 17 8 30 30 H 1.08002 * 119.95777 * 180.20915 * 19 18 17 31 31 H 1.07997 * 119.92233 * 179.76683 * 20 19 18 32 32 H 1.07994 * 119.96129 * 179.97438 * 21 20 19 33 33 H 1.08004 * 120.03508 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1917 1.0600 0.0000 4 6 3.4561 0.7127 0.0006 5 6 3.4662 -0.6972 -0.0043 6 6 4.6481 -1.5824 -0.0111 7 8 5.7602 -1.1106 -0.1483 8 7 4.4940 -2.9133 0.1349 9 6 5.5828 -3.7411 0.0606 10 1 5.9542 -4.2258 0.9513 11 6 6.2094 -3.9570 -1.1606 12 7 5.4967 -4.0204 -2.2626 13 14 8.0652 -4.1570 -1.2357 14 1 8.6308 -4.0460 0.1328 15 1 8.3969 -5.4894 -1.8013 16 1 8.6430 -3.0953 -2.0982 17 6 3.2237 -3.4488 0.3619 18 6 2.8557 -3.8513 1.6401 19 6 1.5979 -4.3764 1.8614 20 6 0.7081 -4.5105 0.8112 21 6 1.0726 -4.1154 -0.4632 22 6 2.3269 -3.5850 -0.6911 23 7 2.1921 -1.0606 0.0005 24 1 -0.3633 -0.0005 -1.0278 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3634 0.8902 0.5133 27 1 4.3126 1.3706 0.0003 28 1 5.9240 -4.2430 -3.1044 29 1 3.5516 -3.7511 2.4599 30 1 1.3101 -4.6863 2.8552 31 1 -0.2737 -4.9251 0.9865 32 1 0.3754 -4.2220 -1.2811 33 1 2.6110 -3.2771 -1.6866 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790368434.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:43 Heat of formation + Delta-G solvation = 105.689990 kcal Electronic energy + Delta-G solvation = -21015.748551 eV Core-core repulsion = 17851.514547 eV Total energy + Delta-G solvation = -3164.234004 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.52288 -40.89572 -39.11721 -36.29962 -34.71229 -34.14327 -33.39904 -31.57455 -30.20681 -29.02274 -27.12823 -24.83347 -23.25985 -23.24049 -22.73006 -21.27825 -19.21437 -18.63901 -17.91322 -17.85799 -17.11818 -16.87426 -16.09614 -15.94077 -15.69438 -15.41033 -14.84949 -14.50586 -14.08870 -13.81188 -13.74960 -13.59973 -13.34842 -13.26087 -12.82232 -12.74892 -12.26598 -12.13178 -11.89304 -11.85183 -11.34620 -10.95464 -10.72847 -10.32482 -9.58157 -9.47537 -9.15588 -8.41061 -6.36265 0.41848 0.69105 0.80227 0.97414 1.30200 1.42023 1.47854 1.52991 2.18152 2.51604 2.72815 2.92969 3.14161 3.17987 3.94280 4.15020 4.26108 4.31785 4.34323 4.36140 4.44924 4.55581 4.73761 4.80122 4.91351 4.98646 5.16667 5.35367 5.42190 5.70432 5.71743 5.79844 5.96411 6.20379 6.35134 6.78732 6.90783 7.20227 7.32829 7.97711 8.53637 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017861 B = 0.008548 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.302504 B = 3274.859360 C = 4287.466050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.142 5.142 3 N -0.296 5.296 4 C 0.016 3.984 5 C -0.067 4.067 6 C 0.566 3.434 7 O -0.584 6.584 8 N -0.409 5.409 9 C -0.390 4.390 10 H 0.072 0.928 11 C 0.050 3.950 12 N -0.856 5.856 13 Si 0.963 3.037 14 H -0.263 1.263 15 H -0.264 1.264 16 H -0.284 1.284 17 C 0.144 3.856 18 C -0.145 4.145 19 C -0.114 4.114 20 C -0.122 4.122 21 C -0.114 4.114 22 C -0.089 4.089 23 N -0.230 5.230 24 H 0.109 0.891 25 H 0.119 0.881 26 H 0.128 0.872 27 H 0.215 0.785 28 H 0.275 0.725 29 H 0.101 0.899 30 H 0.146 0.854 31 H 0.156 0.844 32 H 0.138 0.862 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.740 2.947 4.505 15.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.046 5.046 3 N -0.137 5.137 4 C -0.166 4.166 5 C -0.229 4.229 6 C 0.354 3.646 7 O -0.465 6.465 8 N -0.126 5.126 9 C -0.515 4.515 10 H 0.089 0.911 11 C -0.160 4.160 12 N -0.486 5.486 13 Si 0.786 3.214 14 H -0.187 1.187 15 H -0.189 1.189 16 H -0.210 1.210 17 C 0.055 3.945 18 C -0.164 4.164 19 C -0.132 4.132 20 C -0.140 4.140 21 C -0.132 4.132 22 C -0.109 4.109 23 N -0.079 5.079 24 H 0.127 0.873 25 H 0.137 0.863 26 H 0.146 0.854 27 H 0.232 0.768 28 H 0.084 0.916 29 H 0.119 0.881 30 H 0.164 0.836 31 H 0.174 0.826 32 H 0.156 0.844 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.536 3.195 4.216 16.412 hybrid contribution 2.353 -0.023 -0.520 2.410 sum -13.183 3.172 3.695 14.054 Atomic orbital electron populations 1.22715 0.67174 1.07877 1.06899 1.48807 1.10632 0.98863 1.46326 1.73851 1.03231 1.16120 1.20538 1.24962 0.95108 0.93234 1.03276 1.23257 0.91840 0.95346 1.12414 1.17671 0.85937 0.82458 0.78557 1.90562 1.26354 1.75346 1.54203 1.40675 1.05113 1.03097 1.63734 1.18834 1.07446 1.31033 0.94223 0.91091 1.26307 1.03206 0.91892 0.94645 1.70116 1.38029 1.39631 1.00873 0.85427 0.79365 0.77647 0.78955 1.18727 1.18853 1.21007 1.18342 0.85647 0.97044 0.93500 1.21267 0.97945 1.02092 0.95122 1.21162 0.92264 0.99291 1.00471 1.21320 1.00503 1.00458 0.91728 1.21125 0.94800 0.98964 0.98346 1.20985 0.94635 0.98741 0.96525 1.74915 1.02500 1.14600 1.15911 0.87289 0.86304 0.85366 0.76828 0.91600 0.88058 0.83579 0.82591 0.84387 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.49 11.55 127.77 1.48 2.97 16 2 N -0.14 -4.36 4.34 -206.55 -0.90 -5.26 16 3 N -0.30 -9.84 12.00 -56.12 -0.67 -10.52 16 4 C 0.02 0.63 12.05 85.47 1.03 1.66 16 5 C -0.07 -3.04 6.85 42.21 0.29 -2.76 16 6 C 0.57 31.09 7.50 86.73 0.65 31.74 16 7 O -0.58 -35.20 16.75 -3.97 -0.07 -35.27 16 8 N -0.41 -22.44 2.43 -462.10 -1.12 -23.57 16 9 C -0.39 -22.92 8.32 84.06 0.70 -22.22 16 10 H 0.07 4.16 8.03 -2.91 -0.02 4.14 16 11 C 0.05 2.88 5.08 84.93 0.43 3.31 16 12 N -0.86 -50.03 13.83 21.66 0.30 -49.73 16 13 Si 0.96 46.09 29.68 68.60 2.04 48.13 16 14 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 15 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 16 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 17 C 0.14 6.77 3.46 38.24 0.13 6.90 16 18 C -0.14 -5.81 9.96 22.41 0.22 -5.59 16 19 C -0.11 -3.41 10.04 22.25 0.22 -3.19 16 20 C -0.12 -3.26 10.04 22.30 0.22 -3.03 16 21 C -0.11 -3.62 10.04 22.25 0.22 -3.40 16 22 C -0.09 -3.83 7.74 22.41 0.17 -3.65 16 23 N -0.23 -8.92 8.34 -48.19 -0.40 -9.32 16 24 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.22 7.21 8.06 -2.91 -0.02 7.19 16 28 H 0.27 14.92 8.32 -92.71 -0.77 14.15 16 29 H 0.10 4.15 8.06 -2.91 -0.02 4.13 16 30 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 31 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 32 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 33 H 0.08 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -77.21 300.43 6.08 -71.13 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 1.13 Total: 11.67 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 5.78 Total: 2.73 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -2.80 Total: -98.40 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.07 Total: -35.27 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.04 Total: 48.13 kcal Total: -77.21 6.08 -71.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790368434.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.824 kcal (2) G-P(sol) polarization free energy of solvation -77.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds