Wall clock time and date at job start Mon Mar 30 2020 01:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 120.00077 * 2 1 4 4 H 1.48501 * 109.46714 * 240.00197 * 3 2 1 5 5 H 1.48500 * 109.46905 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47377 * 119.99555 * 3 2 1 7 7 C 1.38799 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00070 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00157 * 0.02562 * 7 2 1 10 10 C 1.80992 * 100.00136 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47342 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47242 * 179.97438 * 11 10 9 13 13 O 1.45201 * 109.47142 * 180.02562 * 12 11 10 14 14 C 1.34222 * 116.99867 * 180.02562 * 13 12 11 15 15 O 1.20830 * 120.00323 * 359.72425 * 14 13 12 16 16 C 1.50706 * 120.00024 * 180.02562 * 14 13 12 17 17 C 1.52998 * 109.47348 * 179.72254 * 16 14 13 18 18 C 1.54258 * 110.03455 * 292.90875 * 17 16 14 19 19 C 1.54967 * 104.16246 * 217.13741 * 18 17 16 20 20 C 1.54887 * 102.77367 * 37.88475 * 19 18 17 21 21 C 1.53874 * 110.03277 * 175.68717 * 17 16 14 22 22 H 0.97002 * 119.99767 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47374 * 59.99782 * 10 9 7 24 24 H 1.09001 * 109.46950 * 300.00026 * 10 9 7 25 25 H 1.09009 * 109.46785 * 59.99953 * 11 10 9 26 26 H 1.08997 * 109.46751 * 300.00022 * 11 10 9 27 27 H 1.09009 * 109.46963 * 60.00436 * 12 11 10 28 28 H 1.09001 * 109.47306 * 300.00342 * 12 11 10 29 29 H 1.09001 * 109.46564 * 299.72723 * 16 14 13 30 30 H 1.08998 * 109.47012 * 59.71777 * 16 14 13 31 31 H 1.09006 * 110.01511 * 54.30082 * 17 16 14 32 32 H 1.09005 * 110.48463 * 335.78619 * 18 17 16 33 33 H 1.09006 * 110.48910 * 98.42335 * 18 17 16 34 34 H 1.09007 * 110.71710 * 279.57479 * 19 18 17 35 35 H 1.09001 * 110.92470 * 156.29521 * 19 18 17 36 36 H 1.09006 * 110.48348 * 203.40513 * 20 19 18 37 37 H 1.08996 * 110.59816 * 80.82043 * 20 19 18 38 38 H 1.09001 * 110.03624 * 238.57082 * 21 17 16 39 39 H 1.09006 * 110.03109 * 359.95719 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9792 -5.3243 0.0012 12 6 3.1512 -6.3078 0.0005 13 8 2.6420 -7.6676 0.0005 14 6 3.5483 -8.6576 0.0005 15 8 4.7281 -8.3967 -0.0045 16 6 3.0945 -10.0947 0.0000 17 6 4.3163 -11.0155 -0.0069 18 6 5.0721 -10.8806 -1.3448 19 6 5.5577 -12.3197 -1.6527 20 6 4.3697 -13.1914 -1.1756 21 6 3.8702 -12.4842 0.1011 22 1 -0.4850 0.8401 -0.0004 23 1 3.1244 -3.7314 0.8905 24 1 3.1243 -3.7313 -0.8895 25 1 1.3703 -5.4847 -0.8887 26 1 1.3709 -5.4840 0.8914 27 1 3.7604 -6.1476 0.8902 28 1 3.7593 -6.1479 -0.8899 29 1 2.4988 -10.2879 0.8922 30 1 2.4912 -10.2848 -0.8877 31 1 4.9775 -10.7642 0.8225 32 1 4.4009 -10.5288 -2.1284 33 1 5.9212 -10.2055 -1.2371 34 1 6.4594 -12.5520 -1.0859 35 1 5.7298 -12.4524 -2.7209 36 1 4.7067 -14.2021 -0.9448 37 1 3.5841 -13.2154 -1.9307 38 1 4.3155 -12.9459 0.9824 39 1 2.7831 -12.5409 0.1592 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805338063.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:41 Heat of formation + Delta-G solvation = -129.294515 kcal Electronic energy + Delta-G solvation = -17896.401275 eV Core-core repulsion = 14928.669121 eV Total energy + Delta-G solvation = -2967.732153 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.123 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.61013 -38.50174 -36.55556 -33.51644 -32.44780 -31.95196 -28.97613 -27.27920 -25.88469 -25.25189 -21.49894 -21.21898 -20.94602 -19.77089 -17.76244 -17.34105 -16.87076 -16.62442 -15.56240 -15.28265 -14.84712 -14.82108 -14.25321 -13.81660 -13.64500 -13.30721 -12.91086 -12.63521 -12.31579 -12.11217 -11.59004 -11.42306 -11.34311 -11.28696 -11.12567 -11.10471 -10.96973 -10.94589 -10.90337 -10.75180 -10.68630 -10.39416 -10.26663 -9.63517 -9.07248 -8.36518 -6.56942 -6.24927 -3.96132 2.18307 2.61352 3.21727 3.22786 3.27311 3.54328 4.19717 4.21876 4.26525 4.38674 4.73432 4.85835 4.94732 5.10468 5.13217 5.13842 5.18913 5.20244 5.29878 5.35173 5.39970 5.45575 5.49502 5.50863 5.59812 5.68066 5.77836 5.79782 5.90819 5.98652 6.00960 6.14411 6.17848 6.45076 6.49228 6.68408 7.58486 7.75183 8.34356 9.21232 10.83162 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.061027 B = 0.002407 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.703637 B =11628.884587 C =11889.180845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.073 0.927 9 S -0.124 6.124 10 C -0.114 4.114 11 C -0.098 4.098 12 C 0.073 3.927 13 O -0.358 6.358 14 C 0.457 3.543 15 O -0.509 6.509 16 C -0.109 4.109 17 C -0.082 4.082 18 C -0.118 4.118 19 C -0.127 4.127 20 C -0.125 4.125 21 C -0.121 4.121 22 H 0.268 0.732 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.048 -24.675 -1.049 25.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.667 4.667 8 H 0.091 0.909 9 S 0.104 5.896 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.002 4.002 13 O -0.275 6.275 14 C 0.300 3.700 15 O -0.397 6.397 16 C -0.146 4.146 17 C -0.101 4.101 18 C -0.156 4.156 19 C -0.164 4.164 20 C -0.163 4.163 21 C -0.158 4.158 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.098 -24.613 -1.046 25.378 hybrid contribution 1.957 1.471 0.029 2.448 sum 8.055 -23.142 -1.017 24.525 Atomic orbital electron populations 1.70012 1.05921 1.27517 1.47042 1.25023 0.95111 0.99130 0.94525 0.86198 0.79215 0.81085 0.78883 1.19908 1.20795 1.19904 1.22653 0.94554 0.90688 1.58795 0.90897 1.84645 1.08829 0.99225 1.96886 1.23180 1.03407 0.96393 1.03308 1.21283 0.96487 0.91597 1.04261 1.23244 0.97675 0.76828 1.02480 1.86485 1.40519 1.16970 1.83486 1.23741 0.84789 0.88935 0.72517 1.90654 1.18662 1.85123 1.45257 1.21609 1.00050 0.87202 1.05765 1.21646 0.95158 0.93596 0.99682 1.22462 1.00397 0.96797 0.95922 1.22530 0.97964 0.95115 1.00829 1.22363 0.98031 0.98640 0.97258 1.22216 1.01094 0.94156 0.98383 0.92194 0.91764 0.91759 0.90394 0.90383 0.91253 0.91252 0.87731 0.87664 0.90012 0.91863 0.90707 0.91565 0.91659 0.91790 0.91589 0.91487 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -14.87 9.50 30.94 0.29 -14.57 16 8 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.12 -3.24 21.44 -107.50 -2.30 -5.54 16 10 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 11 C -0.10 -1.62 5.60 -26.73 -0.15 -1.77 16 12 C 0.07 1.07 5.47 37.16 0.20 1.27 16 13 O -0.36 -4.95 10.22 -39.24 -0.40 -5.35 16 14 C 0.46 5.71 7.74 36.01 0.28 5.99 16 15 O -0.51 -7.63 14.54 -18.75 -0.27 -7.90 16 16 C -0.11 -0.90 4.94 -27.88 -0.14 -1.04 16 17 C -0.08 -0.67 2.55 -89.51 -0.23 -0.90 16 18 C -0.12 -1.04 5.40 -25.03 -0.14 -1.17 16 19 C -0.13 -0.90 6.91 -24.70 -0.17 -1.07 16 20 C -0.13 -0.76 6.83 -25.07 -0.17 -0.94 16 21 C -0.12 -0.75 6.46 -25.61 -0.17 -0.92 16 22 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 24 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 25 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 28 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.11 0.73 8.02 -51.93 -0.42 0.32 16 31 H 0.08 0.76 7.95 -51.93 -0.41 0.35 16 32 H 0.06 0.56 7.77 -51.93 -0.40 0.16 16 33 H 0.07 0.79 7.63 -51.93 -0.40 0.39 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.36 7.67 -51.93 -0.40 -0.03 16 LS Contribution 335.69 15.07 5.06 5.06 Total: -1.00 -31.72 335.69 -9.12 -40.84 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -6.64 Total: -3.17 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -0.27 Total: -15.27 kcal Atomic # 7 Polarization: -25.92 SS G_CDS: 0.73 Total: -25.19 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.67 Total: -13.25 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.30 Total: -5.54 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.72 -9.12 -40.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805338063.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.456 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds