Wall clock time and date at job start Mon Mar 30 2020 01:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 120.00077 * 2 1 4 4 H 1.48501 * 109.46714 * 240.00197 * 3 2 1 5 5 H 1.48500 * 109.46905 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47377 * 119.99555 * 3 2 1 7 7 C 1.38799 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00070 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00157 * 0.02562 * 7 2 1 10 10 C 1.80992 * 100.00136 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47342 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47242 * 179.97438 * 11 10 9 13 13 O 1.45201 * 109.47142 * 180.02562 * 12 11 10 14 14 C 1.34222 * 116.99867 * 180.02562 * 13 12 11 15 15 O 1.20830 * 120.00323 * 359.72425 * 14 13 12 16 16 C 1.50706 * 120.00024 * 180.02562 * 14 13 12 17 17 C 1.52998 * 109.47348 * 179.72254 * 16 14 13 18 18 C 1.54258 * 110.03455 * 292.90875 * 17 16 14 19 19 C 1.54967 * 104.16246 * 217.13741 * 18 17 16 20 20 C 1.54887 * 102.77367 * 37.88475 * 19 18 17 21 21 C 1.53874 * 110.03277 * 175.68717 * 17 16 14 22 22 H 0.97002 * 119.99767 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47374 * 59.99782 * 10 9 7 24 24 H 1.09001 * 109.46950 * 300.00026 * 10 9 7 25 25 H 1.09009 * 109.46785 * 59.99953 * 11 10 9 26 26 H 1.08997 * 109.46751 * 300.00022 * 11 10 9 27 27 H 1.09009 * 109.46963 * 60.00436 * 12 11 10 28 28 H 1.09001 * 109.47306 * 300.00342 * 12 11 10 29 29 H 1.09001 * 109.46564 * 299.72723 * 16 14 13 30 30 H 1.08998 * 109.47012 * 59.71777 * 16 14 13 31 31 H 1.09006 * 110.01511 * 54.30082 * 17 16 14 32 32 H 1.09005 * 110.48463 * 335.78619 * 18 17 16 33 33 H 1.09006 * 110.48910 * 98.42335 * 18 17 16 34 34 H 1.09007 * 110.71710 * 279.57479 * 19 18 17 35 35 H 1.09001 * 110.92470 * 156.29521 * 19 18 17 36 36 H 1.09006 * 110.48348 * 203.40513 * 20 19 18 37 37 H 1.08996 * 110.59816 * 80.82043 * 20 19 18 38 38 H 1.09001 * 110.03624 * 238.57082 * 21 17 16 39 39 H 1.09006 * 110.03109 * 359.95719 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9792 -5.3243 0.0012 12 6 3.1512 -6.3078 0.0005 13 8 2.6420 -7.6676 0.0005 14 6 3.5483 -8.6576 0.0005 15 8 4.7281 -8.3967 -0.0045 16 6 3.0945 -10.0947 0.0000 17 6 4.3163 -11.0155 -0.0069 18 6 5.0721 -10.8806 -1.3448 19 6 5.5577 -12.3197 -1.6527 20 6 4.3697 -13.1914 -1.1756 21 6 3.8702 -12.4842 0.1011 22 1 -0.4850 0.8401 -0.0004 23 1 3.1244 -3.7314 0.8905 24 1 3.1243 -3.7313 -0.8895 25 1 1.3703 -5.4847 -0.8887 26 1 1.3709 -5.4840 0.8914 27 1 3.7604 -6.1476 0.8902 28 1 3.7593 -6.1479 -0.8899 29 1 2.4988 -10.2879 0.8922 30 1 2.4912 -10.2848 -0.8877 31 1 4.9775 -10.7642 0.8225 32 1 4.4009 -10.5288 -2.1284 33 1 5.9212 -10.2055 -1.2371 34 1 6.4594 -12.5520 -1.0859 35 1 5.7298 -12.4524 -2.7209 36 1 4.7067 -14.2021 -0.9448 37 1 3.5841 -13.2154 -1.9307 38 1 4.3155 -12.9459 0.9824 39 1 2.7831 -12.5409 0.1592 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805338063.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:41 Heat of formation + Delta-G solvation = -145.515022 kcal Electronic energy + Delta-G solvation = -17897.104649 eV Core-core repulsion = 14928.669121 eV Total energy + Delta-G solvation = -2968.435527 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.123 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.61944 -39.19435 -37.62326 -34.92101 -34.59247 -32.64815 -29.53516 -28.46637 -27.69508 -26.51240 -22.83838 -22.21938 -21.53051 -20.41081 -19.59112 -18.60999 -17.87539 -17.65783 -16.90687 -16.46768 -16.17039 -15.94575 -15.72621 -14.89801 -14.69618 -14.19858 -14.09256 -13.92162 -13.80341 -13.17322 -13.04038 -12.93392 -12.65368 -12.40705 -12.39140 -12.20910 -11.93980 -11.85645 -11.75946 -11.62781 -11.54512 -11.49803 -11.35114 -11.20684 -11.15053 -10.38301 -8.69705 -8.38986 -6.15920 1.20145 1.27402 1.40575 1.43940 1.52917 1.88336 2.26282 2.95362 3.27229 3.54512 3.67752 3.76085 3.82761 3.90099 3.98017 4.13783 4.29832 4.32736 4.37578 4.49246 4.57896 4.60992 4.66216 4.70849 4.82380 4.89355 4.94132 4.99864 5.07936 5.11615 5.14162 5.27996 5.34005 5.38441 5.49536 5.52118 5.53354 6.16452 6.73565 7.03186 8.70102 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.061027 B = 0.002407 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.703637 B =11628.884587 C =11889.180845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.015 3.985 3 Si 0.994 3.006 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.074 0.926 9 S -0.184 6.184 10 C -0.092 4.092 11 C -0.086 4.086 12 C 0.080 3.920 13 O -0.361 6.361 14 C 0.454 3.546 15 O -0.538 6.538 16 C -0.103 4.103 17 C -0.082 4.082 18 C -0.122 4.122 19 C -0.126 4.126 20 C -0.123 4.123 21 C -0.116 4.116 22 H 0.272 0.728 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.438 -25.837 -1.016 26.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.190 4.190 3 Si 0.816 3.184 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.690 4.690 8 H 0.092 0.908 9 S 0.044 5.956 10 C -0.241 4.241 11 C -0.124 4.124 12 C 0.005 3.995 13 O -0.278 6.278 14 C 0.299 3.701 15 O -0.428 6.428 16 C -0.140 4.140 17 C -0.100 4.100 18 C -0.159 4.159 19 C -0.164 4.164 20 C -0.161 4.161 21 C -0.154 4.154 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.147 0.853 30 H 0.143 0.857 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.483 -25.797 -1.013 26.618 hybrid contribution 1.871 1.735 0.012 2.551 sum 8.354 -24.062 -1.001 25.490 Atomic orbital electron populations 1.70140 1.07631 1.28704 1.47747 1.26074 0.96074 1.03120 0.93700 0.85058 0.77931 0.76047 0.79339 1.18968 1.19894 1.18954 1.23019 0.94828 0.91943 1.59167 0.90815 1.84615 1.13077 1.00819 1.97066 1.23070 1.00784 0.96640 1.03571 1.21104 0.97059 0.89822 1.04431 1.22970 0.96487 0.77390 1.02653 1.86486 1.40973 1.16633 1.83707 1.24639 0.84280 0.89937 0.71235 1.90651 1.19910 1.85556 1.46661 1.21787 1.00497 0.83899 1.07784 1.21643 0.94821 0.95033 0.98540 1.22452 0.99618 0.97396 0.96481 1.22532 0.98502 0.94191 1.01167 1.22373 0.97577 0.98828 0.97288 1.22201 1.02117 0.92356 0.98685 0.91871 0.91423 0.91438 0.90264 0.90225 0.91104 0.91159 0.85348 0.85657 0.91595 0.92045 0.93290 0.91726 0.91268 0.90769 0.90969 0.90941 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.54 13.22 21.65 0.29 -54.25 16 2 C 0.02 0.88 5.49 84.86 0.47 1.35 16 3 Si 0.99 43.90 29.55 68.60 2.03 45.93 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.54 -31.28 9.50 67.95 0.65 -30.63 16 8 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 9 S -0.18 -9.76 21.44 -56.49 -1.21 -10.98 16 10 C -0.09 -3.66 5.67 71.98 0.41 -3.25 16 11 C -0.09 -2.76 5.60 30.60 0.17 -2.59 16 12 C 0.08 2.28 5.47 71.98 0.39 2.68 16 13 O -0.36 -9.49 10.22 -51.34 -0.52 -10.01 16 14 C 0.45 10.82 7.74 71.24 0.55 11.37 16 15 O -0.54 -16.01 14.54 21.95 0.32 -15.70 16 16 C -0.10 -1.48 4.94 29.85 0.15 -1.33 16 17 C -0.08 -1.21 2.55 -10.07 -0.03 -1.24 16 18 C -0.12 -2.08 5.40 31.69 0.17 -1.91 16 19 C -0.13 -1.64 6.91 31.91 0.22 -1.42 16 20 C -0.12 -1.21 6.83 31.67 0.22 -0.99 16 21 C -0.12 -1.14 6.46 31.32 0.20 -0.94 16 22 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 23 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 24 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 25 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 26 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 28 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 29 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.13 1.37 8.02 -2.39 -0.02 1.35 16 31 H 0.07 1.19 7.95 -2.38 -0.02 1.17 16 32 H 0.06 1.04 7.77 -2.38 -0.02 1.03 16 33 H 0.05 1.07 7.63 -2.38 -0.02 1.05 16 34 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.08 0.59 7.67 -2.38 -0.02 0.57 16 Total: -1.00 -68.65 335.69 5.47 -63.19 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 1.00 Total: 10.73 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 3.57 Total: -28.91 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.29 Total: -54.25 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.21 Total: -25.71 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -9.76 SS G_CDS: -1.21 Total: -10.98 kcal Total: -68.65 5.47 -63.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805338063.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.329 kcal (2) G-P(sol) polarization free energy of solvation -68.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds