Wall clock time and date at job start Mon Mar 30 2020 01:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86804 * 119.99633 * 2 1 4 4 H 1.48502 * 109.46887 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47245 * 300.00392 * 3 2 1 6 6 H 1.48494 * 109.46923 * 60.00841 * 3 2 1 7 7 C 1.38793 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00053 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00014 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99881 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46958 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47123 * 180.02562 * 11 10 9 13 13 O 1.45198 * 109.47372 * 180.02562 * 12 11 10 14 14 C 1.34230 * 117.00173 * 180.02562 * 13 12 11 15 15 O 1.20818 * 119.99983 * 0.27497 * 14 13 12 16 16 C 1.50706 * 119.99763 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.46573 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.46997 * 180.02562 * 17 16 14 19 19 C 1.53787 * 113.61211 * 274.14009 * 18 17 16 20 20 C 1.53953 * 87.01614 * 220.04422 * 19 18 17 21 21 C 1.53770 * 113.61593 * 176.53186 * 18 17 16 22 22 H 0.96997 * 120.00221 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.46661 * 60.00164 * 10 9 7 24 24 H 1.08998 * 109.47192 * 300.00212 * 10 9 7 25 25 H 1.08997 * 109.47391 * 60.00311 * 11 10 9 26 26 H 1.08998 * 109.47405 * 300.00158 * 11 10 9 27 27 H 1.09003 * 109.46945 * 60.00578 * 12 11 10 28 28 H 1.08998 * 109.47020 * 300.00285 * 12 11 10 29 29 H 1.09000 * 109.47161 * 299.99883 * 16 14 13 30 30 H 1.09001 * 109.46740 * 60.00026 * 16 14 13 31 31 H 1.09000 * 109.47486 * 299.99934 * 17 16 14 32 32 H 1.09001 * 109.47362 * 60.00657 * 17 16 14 33 33 H 1.08998 * 112.84682 * 45.33228 * 18 17 16 34 34 H 1.08996 * 113.61334 * 334.56317 * 19 18 17 35 35 H 1.08998 * 113.61327 * 105.46988 * 19 18 17 36 36 H 1.08997 * 113.53988 * 270.81322 * 20 19 18 37 37 H 1.09003 * 113.66384 * 139.93346 * 20 19 18 38 38 H 1.09001 * 113.61377 * 254.52911 * 21 18 17 39 39 H 1.08997 * 113.61844 * 25.34687 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9794 -5.3242 0.0001 12 6 3.1514 -6.3076 0.0008 13 8 2.6423 -7.6674 0.0008 14 6 3.5487 -8.6575 0.0018 15 8 4.7283 -8.3966 0.0078 16 6 3.0948 -10.0946 0.0025 17 6 4.3167 -11.0153 0.0030 18 6 3.8560 -12.4743 0.0030 19 6 3.5730 -13.0309 1.4084 20 6 4.2363 -14.3377 0.9368 21 6 5.0116 -13.4852 -0.0817 22 1 -0.4850 0.8400 0.0004 23 1 3.1245 -3.7312 0.8895 24 1 3.1245 -3.7313 -0.8905 25 1 1.3706 -5.4846 -0.8896 26 1 1.3710 -5.4840 0.8903 27 1 3.7599 -6.1472 0.8908 28 1 3.7602 -6.1480 -0.8892 29 1 2.4949 -10.2857 0.8923 30 1 2.4958 -10.2868 -0.8877 31 1 4.9162 -10.8240 -0.8870 32 1 4.9160 -10.8232 0.8930 33 1 3.0554 -12.6653 -0.7116 34 1 4.1244 -12.5218 2.1988 35 1 2.5111 -13.1349 1.6312 36 1 3.5392 -15.0390 0.4784 37 1 4.8717 -14.8026 1.6906 38 1 5.1094 -13.9556 -1.0601 39 1 5.9574 -13.1002 0.2993 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805484924.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:15 Heat of formation + Delta-G solvation = -103.942225 kcal Electronic energy + Delta-G solvation = -17532.081545 eV Core-core repulsion = 14565.448750 eV Total energy + Delta-G solvation = -2966.632795 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.123 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.53265 -39.21866 -36.77281 -33.58680 -33.07282 -32.44855 -27.64256 -26.17029 -25.89915 -25.34904 -22.72735 -21.33368 -20.61164 -19.80338 -17.75776 -17.35278 -16.84145 -16.40890 -15.95776 -15.16845 -14.83756 -14.81626 -14.29677 -14.08716 -13.38014 -13.20913 -12.84885 -12.80990 -12.64086 -12.29207 -12.10880 -11.76381 -11.37362 -11.33140 -11.14700 -10.98913 -10.93865 -10.89952 -10.71498 -10.66374 -10.49777 -10.36610 -10.27100 -9.62328 -9.09101 -8.35815 -6.57038 -6.25513 -3.96494 2.16731 2.60529 3.20139 3.22051 3.29351 3.54475 4.17011 4.19308 4.25630 4.34152 4.47556 4.59730 4.80026 4.91289 5.10153 5.12924 5.14973 5.20065 5.23692 5.32037 5.38879 5.40212 5.40800 5.49879 5.54113 5.54618 5.68383 5.77799 5.86196 5.91206 5.94323 6.14667 6.17949 6.45076 6.48201 6.68195 7.58861 7.73300 8.34565 9.21030 10.82716 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.073067 B = 0.002187 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.116016 B =12798.815345 C =13033.899720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.518 4.518 8 H 0.074 0.926 9 S -0.125 6.125 10 C -0.114 4.114 11 C -0.098 4.098 12 C 0.072 3.928 13 O -0.357 6.357 14 C 0.457 3.543 15 O -0.513 6.513 16 C -0.113 4.113 17 C -0.099 4.099 18 C -0.112 4.112 19 C -0.140 4.140 20 C -0.144 4.144 21 C -0.137 4.137 22 H 0.267 0.733 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.462 -25.790 0.578 26.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.666 4.666 8 H 0.092 0.908 9 S 0.104 5.896 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.003 4.003 13 O -0.274 6.274 14 C 0.301 3.699 15 O -0.402 6.402 16 C -0.150 4.150 17 C -0.137 4.137 18 C -0.130 4.130 19 C -0.178 4.178 20 C -0.182 4.182 21 C -0.175 4.175 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.525 -25.733 0.582 26.326 hybrid contribution 1.954 1.455 -0.011 2.436 sum 7.479 -24.278 0.571 25.410 Atomic orbital electron populations 1.70027 1.05924 1.27305 1.47226 1.25025 0.95107 0.99148 0.94538 0.86088 0.79651 0.81738 0.77901 1.19581 1.20541 1.20537 1.22742 0.94633 0.90663 1.58546 0.90782 1.84653 1.08847 0.99272 1.96875 1.23182 1.03405 0.96388 1.03326 1.21280 0.96470 0.91584 1.04277 1.23254 0.97704 0.76821 1.02506 1.86486 1.40490 1.16980 1.83429 1.23790 0.84727 0.89037 0.72391 1.90661 1.18791 1.85201 1.45500 1.21415 1.00691 0.87072 1.05869 1.21434 0.96053 0.92364 1.03818 1.22585 0.98839 0.93570 0.98022 1.23052 1.01047 0.96913 0.96763 1.22840 0.99616 0.96590 0.99112 1.22932 0.97765 0.97154 0.99639 0.92300 0.91751 0.91744 0.90372 0.90377 0.91231 0.91240 0.87688 0.87737 0.90857 0.90860 0.88958 0.89978 0.91393 0.90274 0.91554 0.91520 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.91 13.22 55.49 0.73 -25.18 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.84 9.50 30.94 0.29 -14.55 16 8 H 0.07 2.06 7.80 -52.49 -0.41 1.65 16 9 S -0.12 -3.25 21.44 -107.50 -2.30 -5.56 16 10 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 11 C -0.10 -1.61 5.60 -26.73 -0.15 -1.76 16 12 C 0.07 1.07 5.47 37.16 0.20 1.27 16 13 O -0.36 -4.96 10.22 -39.26 -0.40 -5.36 16 14 C 0.46 5.76 7.96 36.01 0.29 6.05 16 15 O -0.51 -7.92 15.73 -18.74 -0.29 -8.22 16 16 C -0.11 -0.92 5.81 -27.88 -0.16 -1.08 16 17 C -0.10 -0.78 4.33 -26.73 -0.12 -0.89 16 18 C -0.11 -0.69 3.64 -89.81 -0.33 -1.01 16 19 C -0.14 -0.83 7.65 -25.83 -0.20 -1.02 16 20 C -0.14 -0.80 8.09 -25.83 -0.21 -1.01 16 21 C -0.14 -0.83 7.64 -25.92 -0.20 -1.02 16 22 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.06 1.28 8.14 -51.91 -0.42 0.85 16 24 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 25 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 32 H 0.07 0.64 7.83 -51.93 -0.41 0.23 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.50 7.92 -51.93 -0.41 0.09 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 LS Contribution 342.21 15.07 5.16 5.16 Total: -1.00 -32.04 342.21 -9.29 -41.33 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -6.70 Total: -3.50 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -0.46 Total: -15.21 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.73 Total: -25.18 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.70 Total: -13.58 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -2.30 Total: -5.56 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.04 -9.29 -41.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805484924.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.611 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds