Wall clock time and date at job start Mon Mar 30 2020 01:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86804 * 119.99633 * 2 1 4 4 H 1.48502 * 109.46887 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47245 * 300.00392 * 3 2 1 6 6 H 1.48494 * 109.46923 * 60.00841 * 3 2 1 7 7 C 1.38793 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00053 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00014 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99881 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46958 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47123 * 180.02562 * 11 10 9 13 13 O 1.45198 * 109.47372 * 180.02562 * 12 11 10 14 14 C 1.34230 * 117.00173 * 180.02562 * 13 12 11 15 15 O 1.20818 * 119.99983 * 0.27497 * 14 13 12 16 16 C 1.50706 * 119.99763 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.46573 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.46997 * 180.02562 * 17 16 14 19 19 C 1.53787 * 113.61211 * 274.14009 * 18 17 16 20 20 C 1.53953 * 87.01614 * 220.04422 * 19 18 17 21 21 C 1.53770 * 113.61593 * 176.53186 * 18 17 16 22 22 H 0.96997 * 120.00221 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.46661 * 60.00164 * 10 9 7 24 24 H 1.08998 * 109.47192 * 300.00212 * 10 9 7 25 25 H 1.08997 * 109.47391 * 60.00311 * 11 10 9 26 26 H 1.08998 * 109.47405 * 300.00158 * 11 10 9 27 27 H 1.09003 * 109.46945 * 60.00578 * 12 11 10 28 28 H 1.08998 * 109.47020 * 300.00285 * 12 11 10 29 29 H 1.09000 * 109.47161 * 299.99883 * 16 14 13 30 30 H 1.09001 * 109.46740 * 60.00026 * 16 14 13 31 31 H 1.09000 * 109.47486 * 299.99934 * 17 16 14 32 32 H 1.09001 * 109.47362 * 60.00657 * 17 16 14 33 33 H 1.08998 * 112.84682 * 45.33228 * 18 17 16 34 34 H 1.08996 * 113.61334 * 334.56317 * 19 18 17 35 35 H 1.08998 * 113.61327 * 105.46988 * 19 18 17 36 36 H 1.08997 * 113.53988 * 270.81322 * 20 19 18 37 37 H 1.09003 * 113.66384 * 139.93346 * 20 19 18 38 38 H 1.09001 * 113.61377 * 254.52911 * 21 18 17 39 39 H 1.08997 * 113.61844 * 25.34687 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9794 -5.3242 0.0001 12 6 3.1514 -6.3076 0.0008 13 8 2.6423 -7.6674 0.0008 14 6 3.5487 -8.6575 0.0018 15 8 4.7283 -8.3966 0.0078 16 6 3.0948 -10.0946 0.0025 17 6 4.3167 -11.0153 0.0030 18 6 3.8560 -12.4743 0.0030 19 6 3.5730 -13.0309 1.4084 20 6 4.2363 -14.3377 0.9368 21 6 5.0116 -13.4852 -0.0817 22 1 -0.4850 0.8400 0.0004 23 1 3.1245 -3.7312 0.8895 24 1 3.1245 -3.7313 -0.8905 25 1 1.3706 -5.4846 -0.8896 26 1 1.3710 -5.4840 0.8903 27 1 3.7599 -6.1472 0.8908 28 1 3.7602 -6.1480 -0.8892 29 1 2.4949 -10.2857 0.8923 30 1 2.4958 -10.2868 -0.8877 31 1 4.9162 -10.8240 -0.8870 32 1 4.9160 -10.8232 0.8930 33 1 3.0554 -12.6653 -0.7116 34 1 4.1244 -12.5218 2.1988 35 1 2.5111 -13.1349 1.6312 36 1 3.5392 -15.0390 0.4784 37 1 4.8717 -14.8026 1.6906 38 1 5.1094 -13.9556 -1.0601 39 1 5.9574 -13.1002 0.2993 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805484924.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:15 Heat of formation + Delta-G solvation = -120.106935 kcal Electronic energy + Delta-G solvation = -17532.782500 eV Core-core repulsion = 14565.448750 eV Total energy + Delta-G solvation = -2967.333750 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.123 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.56302 -39.74083 -37.88440 -34.93385 -34.59830 -33.82959 -28.67184 -27.80468 -26.87026 -26.37126 -23.46418 -22.70099 -21.49739 -20.28796 -19.58574 -18.63962 -17.90265 -17.44236 -16.91272 -16.52013 -16.18604 -16.10876 -15.40048 -15.10047 -14.83135 -14.20105 -13.98357 -13.86954 -13.63554 -13.26858 -13.13703 -12.98645 -12.93017 -12.62413 -12.42466 -12.38751 -12.29421 -11.95757 -11.71768 -11.51896 -11.47072 -11.36329 -11.17181 -11.00148 -10.94932 -10.37524 -8.69510 -8.39486 -6.16137 1.17672 1.27647 1.37959 1.44280 1.54310 1.88015 2.25782 2.95066 3.27165 3.61761 3.64953 3.77846 3.82878 3.93059 3.97850 4.02294 4.12568 4.21061 4.30138 4.33336 4.48713 4.63926 4.66114 4.68507 4.84412 4.92848 4.94466 4.99993 5.02409 5.12053 5.13117 5.19047 5.27409 5.38973 5.45396 5.48820 5.69512 6.16769 6.70853 7.03125 8.70127 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.073067 B = 0.002187 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.116016 B =12798.815345 C =13033.899720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.016 3.984 3 Si 0.995 3.005 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.541 4.541 8 H 0.074 0.926 9 S -0.184 6.184 10 C -0.092 4.092 11 C -0.086 4.086 12 C 0.079 3.921 13 O -0.360 6.360 14 C 0.455 3.545 15 O -0.545 6.545 16 C -0.105 4.105 17 C -0.095 4.095 18 C -0.107 4.107 19 C -0.142 4.142 20 C -0.143 4.143 21 C -0.142 4.142 22 H 0.272 0.728 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.870 -26.687 0.499 27.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.689 4.689 8 H 0.092 0.908 9 S 0.044 5.956 10 C -0.241 4.241 11 C -0.124 4.124 12 C 0.004 3.996 13 O -0.277 6.277 14 C 0.301 3.699 15 O -0.436 6.436 16 C -0.142 4.142 17 C -0.133 4.133 18 C -0.125 4.125 19 C -0.179 4.179 20 C -0.180 4.180 21 C -0.180 4.180 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.143 0.857 30 H 0.146 0.854 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.124 0.876 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.925 -26.651 0.503 27.306 hybrid contribution 1.850 1.623 0.015 2.461 sum 7.775 -25.028 0.518 26.213 Atomic orbital electron populations 1.70148 1.07630 1.28585 1.47888 1.26068 0.96066 1.03113 0.93708 0.84951 0.78374 0.76614 0.78336 1.18766 1.19620 1.19615 1.23090 0.94840 0.91956 1.58973 0.90826 1.84618 1.13068 1.00822 1.97057 1.23075 1.00795 0.96648 1.03596 1.21100 0.97036 0.89792 1.04468 1.22989 0.96540 0.77372 1.02708 1.86488 1.40913 1.16650 1.83608 1.24712 0.84165 0.90081 0.70988 1.90652 1.20151 1.85678 1.47094 1.21577 1.01134 0.83650 1.07878 1.21388 0.95744 0.93506 1.02622 1.22585 0.99188 0.92155 0.98599 1.23063 1.01503 0.96965 0.96382 1.22855 0.99627 0.96574 0.98933 1.22961 0.97564 0.97368 1.00070 0.91871 0.91423 0.91402 0.90197 0.90225 0.91101 0.91074 0.85661 0.85382 0.92031 0.92205 0.87647 0.90556 0.90589 0.89427 0.91517 0.91077 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.46 13.22 21.65 0.29 -54.18 16 2 C 0.02 0.88 5.49 84.86 0.47 1.35 16 3 Si 1.00 43.94 29.55 68.60 2.03 45.97 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.54 -31.22 9.50 67.95 0.65 -30.58 16 8 H 0.07 4.10 7.80 -2.91 -0.02 4.08 16 9 S -0.18 -9.74 21.44 -56.49 -1.21 -10.95 16 10 C -0.09 -3.68 5.67 71.98 0.41 -3.27 16 11 C -0.09 -2.74 5.60 30.59 0.17 -2.57 16 12 C 0.08 2.25 5.47 71.98 0.39 2.64 16 13 O -0.36 -9.42 10.22 -51.41 -0.53 -9.95 16 14 C 0.46 10.84 7.96 71.24 0.57 11.41 16 15 O -0.55 -16.52 15.73 21.99 0.35 -16.18 16 16 C -0.11 -1.48 5.81 29.85 0.17 -1.30 16 17 C -0.09 -1.36 4.33 30.60 0.13 -1.23 16 18 C -0.11 -1.11 3.64 -10.27 -0.04 -1.15 16 19 C -0.14 -1.41 7.65 31.18 0.24 -1.17 16 20 C -0.14 -1.34 8.09 31.18 0.25 -1.09 16 21 C -0.14 -1.52 7.64 31.12 0.24 -1.29 16 22 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 23 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 24 H 0.07 2.65 8.14 -2.40 -0.02 2.63 16 25 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 28 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 32 H 0.06 1.02 7.83 -2.39 -0.02 1.00 16 33 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 0.85 7.92 -2.39 -0.02 0.83 16 35 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 0.90 8.10 -2.39 -0.02 0.88 16 Total: -1.00 -68.85 342.21 5.57 -63.28 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 1.00 Total: 10.25 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: 3.65 Total: -28.24 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.29 Total: -54.18 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.18 Total: -26.12 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -9.74 SS G_CDS: -1.21 Total: -10.95 kcal Total: -68.85 5.57 -63.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805484924.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.830 kcal (2) G-P(sol) polarization free energy of solvation -68.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds