Wall clock time and date at job start Mon Mar 30 2020 00:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48502 * 109.47245 * 270.00062 * 3 2 1 5 5 H 1.48508 * 109.47285 * 30.00279 * 3 2 1 6 6 H 1.48499 * 109.47170 * 150.00222 * 3 2 1 7 7 C 1.37874 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99350 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 O 1.20824 * 120.00141 * 0.02562 * 13 12 11 15 15 O 1.34226 * 119.99900 * 180.02562 * 13 12 11 16 16 C 1.45203 * 116.99798 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46837 * 179.97438 * 16 15 13 18 18 H 1.08996 * 110.48376 * 54.29849 * 17 16 15 19 19 C 1.54078 * 110.53986 * 176.98256 * 17 16 15 20 20 O 1.46080 * 103.73688 * 118.56321 * 19 17 16 21 21 C 1.33718 * 109.21395 * 0.11284 * 20 19 17 22 22 O 1.21426 * 123.07563 * 179.97438 * 21 20 19 23 23 O 1.33712 * 113.84242 * 359.92471 * 21 20 19 24 24 H 0.96998 * 120.00187 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.46894 * 60.00012 * 9 7 2 26 26 H 1.09001 * 109.46436 * 299.99731 * 9 7 2 27 27 H 1.09001 * 109.46741 * 59.99975 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 29 29 H 1.09001 * 109.46652 * 60.00345 * 11 10 9 30 30 H 1.08992 * 109.47514 * 300.00434 * 11 10 9 31 31 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 32 32 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 33 33 H 1.08993 * 109.47391 * 299.99599 * 16 15 13 34 34 H 1.09000 * 109.47246 * 59.99772 * 16 15 13 35 35 H 1.09000 * 110.54411 * 237.20311 * 19 17 16 36 36 H 1.09001 * 110.54286 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 6 1.7211 -7.4551 -0.0018 14 8 0.5129 -7.4551 -0.0018 15 8 2.3923 -8.6175 -0.0018 16 6 1.6015 -9.8353 -0.0012 17 6 2.5336 -11.0487 -0.0020 18 1 3.2391 -10.9882 0.8266 19 6 1.7204 -12.3551 0.0746 20 8 2.0599 -13.0482 -1.1657 21 6 2.9218 -12.3024 -1.8649 22 8 3.3712 -12.6420 -2.9406 23 8 3.2428 -11.1480 -1.2714 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6248 -2.5570 0.8898 27 1 2.8726 -3.6046 0.8877 28 1 2.8713 -3.6039 -0.8923 29 1 0.8528 -5.0446 -0.8905 30 1 0.8546 -5.0450 0.8894 31 1 3.1007 -6.0922 -0.8922 32 1 3.1019 -6.0922 0.8878 33 1 0.9731 -9.8600 0.8889 34 1 0.9723 -9.8603 -0.8910 35 1 2.0239 -12.9445 0.9398 36 1 0.6526 -12.1393 0.1126 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805697434.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:20 Heat of formation + Delta-G solvation = -259.433050 kcal Electronic energy + Delta-G solvation = -19906.541080 eV Core-core repulsion = 16354.579731 eV Total energy + Delta-G solvation = -3551.961349 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.27285 -41.56884 -39.05332 -38.09819 -37.65779 -36.62280 -34.66516 -33.15820 -31.61337 -28.32752 -27.18948 -24.66069 -24.36616 -23.74133 -22.07438 -21.47197 -19.29016 -18.84283 -18.61551 -18.58740 -18.35433 -17.78777 -17.20451 -16.76615 -16.47365 -16.08510 -15.32269 -15.27008 -14.89653 -14.57619 -14.41514 -13.95111 -13.72423 -13.65632 -13.45442 -13.28538 -12.83350 -12.55860 -12.35892 -12.32468 -12.19327 -12.17723 -11.91570 -11.76661 -11.61443 -11.37680 -11.28863 -11.04524 -10.54139 -8.18573 -6.30047 1.03601 1.13819 1.38412 1.41464 1.42983 1.46743 1.54094 2.00001 2.42383 2.86963 3.12272 3.14646 3.41277 3.77797 3.85299 4.00947 4.07828 4.11609 4.18017 4.39262 4.47073 4.58212 4.64976 4.80590 4.86705 5.15700 5.18980 5.32762 5.38888 5.57431 5.78948 5.89213 5.96576 6.14192 6.26201 6.67341 6.88687 7.39624 8.93545 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.053020 B = 0.002347 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.978488 B =11925.889571 C =12159.961745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.018 3.982 10 C -0.097 4.097 11 C -0.101 4.101 12 C -0.105 4.105 13 C 0.470 3.530 14 O -0.538 6.538 15 O -0.352 6.352 16 C 0.044 3.956 17 C 0.050 3.950 18 H 0.174 0.826 19 C 0.029 3.971 20 O -0.332 6.332 21 C 0.598 3.402 22 O -0.504 6.504 23 O -0.328 6.328 24 H 0.263 0.737 25 H -0.015 1.015 26 H -0.011 1.011 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.124 0.876 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.073 0.927 35 H 0.172 0.828 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.691 -26.260 5.660 27.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.019 4.019 10 C -0.135 4.135 11 C -0.138 4.138 12 C -0.142 4.142 13 C 0.315 3.685 14 O -0.428 6.428 15 O -0.269 6.269 16 C -0.029 4.029 17 C -0.005 4.005 18 H 0.191 0.809 19 C -0.043 4.043 20 O -0.250 6.250 21 C 0.406 3.594 22 O -0.400 6.400 23 O -0.247 6.247 24 H 0.071 0.929 25 H 0.004 0.996 26 H 0.007 0.993 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.142 0.858 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.091 0.909 35 H 0.189 0.811 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.424 -26.378 5.088 27.406 hybrid contribution -0.370 1.095 -0.229 1.179 sum 5.053 -25.282 4.859 26.236 Atomic orbital electron populations 1.70119 1.07978 1.27725 1.51972 1.26056 0.95770 1.03628 0.94866 0.85417 0.78728 0.78263 0.78450 1.19890 1.20960 1.18345 1.21767 0.93759 0.92297 1.50098 0.91647 1.19058 0.94690 0.93598 0.94540 1.21446 0.97905 0.92507 1.01618 1.21357 0.97446 0.93162 1.01881 1.21508 0.98907 0.85682 1.08077 1.24231 0.87002 0.86400 0.70878 1.90688 1.17068 1.88229 1.46786 1.86535 1.41450 1.14793 1.84104 1.23662 0.93033 0.80536 1.05714 1.24903 0.95788 0.94829 0.84938 0.80882 1.25455 1.04037 0.89501 0.85353 1.87469 1.57816 1.45118 1.34615 1.21380 0.76401 0.77875 0.83727 1.91141 1.56629 1.73214 1.18972 1.87561 1.64330 1.37021 1.35750 0.92867 0.99614 0.99290 0.91680 0.92124 0.93324 0.92671 0.85767 0.84817 0.85263 0.90882 0.81085 0.83687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.99 13.29 21.45 0.28 -57.71 16 2 C -0.01 -0.35 5.46 84.65 0.46 0.12 16 3 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.54 -30.71 9.11 25.60 0.23 -30.48 16 8 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.02 0.96 4.97 29.85 0.15 1.11 16 10 C -0.10 -3.73 5.15 30.59 0.16 -3.57 16 11 C -0.10 -3.26 4.50 30.59 0.14 -3.12 16 12 C -0.10 -2.31 5.81 29.85 0.17 -2.14 16 13 C 0.47 10.99 7.96 71.24 0.57 11.56 16 14 O -0.54 -16.18 15.73 21.97 0.35 -15.84 16 15 O -0.35 -6.29 10.22 -50.62 -0.52 -6.81 16 16 C 0.04 0.48 5.01 71.98 0.36 0.84 16 17 C 0.05 0.30 4.16 30.96 0.13 0.43 16 18 H 0.17 -0.06 8.14 -2.39 -0.02 -0.08 16 19 C 0.03 0.03 7.91 72.35 0.57 0.60 16 20 O -0.33 -4.41 11.12 -38.93 -0.43 -4.84 16 21 C 0.60 12.31 9.39 113.37 1.06 13.37 16 22 O -0.50 -15.18 18.04 27.80 0.50 -14.67 16 23 O -0.33 -5.67 10.82 -38.61 -0.42 -6.09 16 24 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 25 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 26 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 27 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 30 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 31 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.13 0.72 8.13 -2.39 -0.02 0.70 16 34 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 35 H 0.17 -1.22 8.14 -2.39 -0.02 -1.23 16 36 H 0.15 -0.48 7.73 -2.39 -0.02 -0.50 16 Total: -1.00 -82.92 320.88 6.87 -76.05 By element: Atomic # 1 Polarization: -6.12 SS G_CDS: 1.08 Total: -5.04 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: 4.01 Total: -11.29 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: 0.28 Total: -57.71 kcal Atomic # 8 Polarization: -47.73 SS G_CDS: -0.52 Total: -48.25 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -82.92 6.87 -76.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805697434.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.387 kcal (2) G-P(sol) polarization free energy of solvation -82.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -266.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds