Wall clock time and date at job start Mon Mar 30 2020 01:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99854 * 2 1 4 4 H 1.48502 * 109.47435 * 273.56652 * 3 2 1 5 5 H 1.48498 * 109.47440 * 33.56991 * 3 2 1 6 6 H 1.48501 * 109.47074 * 153.56951 * 3 2 1 7 7 C 1.37878 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99519 * 6.13320 * 7 2 1 9 9 C 1.50694 * 120.00046 * 186.13025 * 7 2 1 10 10 O 1.45202 * 112.84870 * 65.52096 * 9 7 2 11 11 C 1.34232 * 116.99914 * 65.33046 * 10 9 7 12 12 O 1.20829 * 120.00077 * 359.58311 * 11 10 9 13 13 C 1.50697 * 119.99766 * 179.59272 * 11 10 9 14 14 H 1.09000 * 112.50605 * 313.63551 * 13 11 10 15 15 C 1.52892 * 113.21813 * 183.76197 * 13 11 10 16 16 C 1.51424 * 84.72836 * 244.76064 * 15 13 11 17 17 C 1.38954 * 145.52757 * 179.97438 * 16 15 13 18 18 C 1.37978 * 120.32296 * 180.02562 * 17 16 15 19 19 C 1.38235 * 120.17940 * 359.97438 * 18 17 16 20 20 C 1.38172 * 119.74704 * 359.97438 * 19 18 17 21 21 C 1.38236 * 120.12928 * 0.02604 * 20 19 18 22 22 C 1.53777 * 113.61529 * 196.71475 * 9 7 2 23 23 C 1.53956 * 87.01921 * 89.23009 * 22 9 7 24 24 C 1.53781 * 87.11131 * 25.36589 * 23 22 9 25 25 H 0.97003 * 119.99929 * 359.97438 * 1 2 3 26 26 H 1.08995 * 113.99026 * 358.70824 * 15 13 11 27 27 H 1.09004 * 113.98684 * 130.81970 * 15 13 11 28 28 H 1.07998 * 119.83662 * 0.03275 * 17 16 15 29 29 H 1.07999 * 119.90661 * 179.97438 * 18 17 16 30 30 H 1.07999 * 120.12489 * 180.02562 * 19 18 17 31 31 H 1.08004 * 119.93790 * 179.97438 * 20 19 18 32 32 H 1.09001 * 113.61692 * 203.74949 * 22 9 7 33 33 H 1.09005 * 113.61495 * 334.65565 * 22 9 7 34 34 H 1.08992 * 113.54307 * 270.81374 * 23 22 9 35 35 H 1.08999 * 113.66660 * 139.93032 * 23 22 9 36 36 H 1.09005 * 113.61436 * 220.09139 * 24 23 22 37 37 H 1.08996 * 113.61691 * 89.18341 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4212 2.0900 -1.3973 5 1 1.4864 2.6297 0.7742 6 1 3.5824 1.4196 0.6232 7 6 2.0046 -1.1941 -0.0005 8 1 1.4691 -2.1266 -0.1009 9 6 3.5051 -1.1978 0.1388 10 8 3.9525 -0.7112 1.4316 11 6 3.6264 -1.4471 2.5059 12 8 2.9819 -2.4602 2.3712 13 6 4.0641 -1.0095 3.8799 14 1 5.1129 -0.7139 3.9093 15 6 3.6889 -2.0053 4.9777 16 6 2.8032 -0.8903 5.4926 17 6 1.8965 -0.5079 6.4738 18 6 1.3426 0.7557 6.4560 19 6 1.6868 1.6514 5.4609 20 6 2.5886 1.2769 4.4834 21 6 3.1442 0.0113 4.5000 22 6 4.1592 -2.5251 -0.2798 23 6 4.2417 -1.9429 -1.7026 24 6 4.2358 -0.5507 -1.0495 25 1 -0.4850 0.8401 0.0004 26 1 3.1411 -2.8761 4.6177 27 1 4.5124 -2.2609 5.6445 28 1 1.6242 -1.2031 7.2540 29 1 0.6383 1.0457 7.2217 30 1 1.2530 2.6404 5.4482 31 1 2.8593 1.9741 3.7042 32 1 5.1331 -2.6958 0.1792 33 1 3.4944 -3.3849 -0.1967 34 1 3.3579 -2.1451 -2.3076 35 1 5.1722 -2.1791 -2.2188 36 1 3.6327 0.1812 -1.5869 37 1 5.2305 -0.1806 -0.8013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810858997.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:36 Heat of formation + Delta-G solvation = 8.666482 kcal Electronic energy + Delta-G solvation = -21252.576521 eV Core-core repulsion = 18155.382854 eV Total energy + Delta-G solvation = -3097.193667 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.71286 -39.21986 -37.29119 -35.08457 -34.37387 -32.34610 -30.60088 -27.63247 -26.67650 -25.29567 -24.96912 -22.90735 -21.91373 -20.77003 -19.21525 -18.58977 -17.36638 -16.60894 -16.19981 -15.46567 -15.24004 -15.03386 -14.54000 -14.09390 -13.80194 -13.55561 -12.92107 -12.87350 -12.62865 -12.34626 -11.96648 -11.77171 -11.68743 -11.47857 -11.10203 -10.99054 -10.78166 -10.62914 -10.30602 -10.14349 -9.99854 -9.81237 -9.56059 -9.03298 -8.79135 -8.63013 -8.55687 -8.33213 -6.20853 -4.27428 1.47694 1.57643 3.16618 3.23901 3.34255 3.48410 3.70906 4.00651 4.35036 4.37803 4.59175 4.74275 5.10290 5.19052 5.27643 5.36964 5.46044 5.50129 5.66541 5.71655 5.80718 5.82818 5.86660 6.03943 6.12142 6.24517 6.30357 6.36065 6.38012 6.55337 6.63234 6.66853 6.83457 6.91077 6.94151 7.15615 7.23961 7.51795 7.79779 8.39112 8.85495 8.97621 9.41036 10.89495 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.019448 B = 0.007906 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.397792 B = 3540.890176 C = 4315.576913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.086 3.914 3 Si 0.862 3.138 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.235 1.235 7 C -0.506 4.506 8 H 0.084 0.916 9 C 0.199 3.801 10 O -0.365 6.365 11 C 0.474 3.526 12 O -0.490 6.490 13 C -0.046 4.046 14 H 0.117 0.883 15 C -0.061 4.061 16 C -0.119 4.119 17 C -0.102 4.102 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.077 4.077 21 C -0.113 4.113 22 C -0.145 4.145 23 C -0.124 4.124 24 C -0.133 4.133 25 H 0.267 0.733 26 H 0.113 0.887 27 H 0.098 0.902 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.489 1.276 9.403 12.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.120 4.120 3 Si 0.689 3.311 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.158 1.158 7 C -0.543 4.543 8 H 0.102 0.898 9 C 0.165 3.835 10 O -0.282 6.282 11 C 0.315 3.685 12 O -0.376 6.376 13 C -0.065 4.065 14 H 0.135 0.865 15 C -0.097 4.097 16 C -0.119 4.119 17 C -0.120 4.120 18 C -0.135 4.135 19 C -0.137 4.137 20 C -0.095 4.095 21 C -0.114 4.114 22 C -0.183 4.183 23 C -0.162 4.162 24 C -0.170 4.170 25 H 0.076 0.924 26 H 0.132 0.868 27 H 0.117 0.883 28 H 0.135 0.865 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.137 0.863 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.118 1.076 9.306 12.396 hybrid contribution 0.068 1.075 -0.111 1.083 sum 8.186 2.151 9.194 12.497 Atomic orbital electron populations 1.69932 1.06492 1.27410 1.47526 1.25008 0.94665 0.99413 0.92909 0.87092 0.82467 0.83201 0.78367 1.20554 1.21722 1.15776 1.20791 0.87355 0.95187 1.50959 0.89774 1.21668 0.94696 0.90856 0.76233 1.86565 1.71583 1.52881 1.17210 1.22368 0.77651 0.82237 0.86228 1.90585 1.35071 1.25393 1.86600 1.21076 1.00385 0.94010 0.91060 0.86494 1.21775 0.97546 0.96393 0.93996 1.22323 0.97155 0.96904 0.95539 1.20458 0.96920 0.96236 0.98392 1.20923 0.99968 0.93575 0.98987 1.20976 0.97938 0.99895 0.94920 1.20271 0.96139 0.94820 0.98290 1.21145 0.98953 0.94127 0.97128 1.23352 0.99494 0.99309 0.96144 1.22521 1.01000 0.96436 0.96223 1.23275 0.99479 0.97309 0.96966 0.92363 0.86849 0.88327 0.86493 0.85855 0.85600 0.86267 0.91868 0.91105 0.89553 0.92411 0.91397 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.98 13.96 55.43 0.77 -26.21 16 2 C 0.09 2.49 5.47 -17.82 -0.10 2.39 16 3 Si 0.86 21.58 24.55 -169.99 -4.17 17.40 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.23 -5.63 5.61 56.52 0.32 -5.32 16 7 C -0.51 -14.51 7.77 -34.44 -0.27 -14.77 16 8 H 0.08 2.68 8.05 -52.48 -0.42 2.26 16 9 C 0.20 4.83 0.23 -90.96 -0.02 4.81 16 10 O -0.36 -8.66 8.22 -39.26 -0.32 -8.99 16 11 C 0.47 10.62 7.02 36.00 0.25 10.87 16 12 O -0.49 -12.25 14.12 -18.75 -0.26 -12.52 16 13 C -0.05 -0.80 4.25 -96.59 -0.41 -1.21 16 14 H 0.12 1.66 8.14 -51.93 -0.42 1.24 16 15 C -0.06 -0.90 7.91 -27.58 -0.22 -1.12 16 16 C -0.12 -1.95 7.32 -107.60 -0.79 -2.74 16 17 C -0.10 -1.48 10.05 -39.41 -0.40 -1.88 16 18 C -0.12 -1.62 10.03 -39.68 -0.40 -2.01 16 19 C -0.12 -1.80 10.06 -39.61 -0.40 -2.20 16 20 C -0.08 -1.36 10.04 -39.61 -0.40 -1.76 16 21 C -0.11 -2.06 7.06 -104.55 -0.74 -2.80 16 22 C -0.15 -3.08 6.51 -25.83 -0.17 -3.25 16 23 C -0.12 -2.37 7.81 -25.83 -0.20 -2.58 16 24 C -0.13 -2.82 6.01 -25.92 -0.16 -2.97 16 25 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 26 H 0.11 1.84 7.03 -51.93 -0.37 1.47 16 27 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 31 H 0.12 2.07 8.06 -52.48 -0.42 1.65 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.58 8.09 -51.93 -0.42 1.16 16 34 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.51 5.59 -51.93 -0.29 1.21 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 306.34 15.07 4.62 4.62 Total: -1.00 -33.27 306.34 -8.72 -41.99 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -4.95 Total: 4.92 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -4.40 Total: -21.21 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.77 Total: -26.21 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.59 Total: -21.51 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.17 Total: 17.40 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.27 -8.72 -41.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810858997.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.653 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds