Wall clock time and date at job start Mon Mar 30 2020 01:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99854 * 2 1 4 4 H 1.48502 * 109.47435 * 273.56652 * 3 2 1 5 5 H 1.48498 * 109.47440 * 33.56991 * 3 2 1 6 6 H 1.48501 * 109.47074 * 153.56951 * 3 2 1 7 7 C 1.37878 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99519 * 6.13320 * 7 2 1 9 9 C 1.50694 * 120.00046 * 186.13025 * 7 2 1 10 10 O 1.45202 * 112.84870 * 65.52096 * 9 7 2 11 11 C 1.34232 * 116.99914 * 65.33046 * 10 9 7 12 12 O 1.20829 * 120.00077 * 359.58311 * 11 10 9 13 13 C 1.50697 * 119.99766 * 179.59272 * 11 10 9 14 14 H 1.09000 * 112.50605 * 313.63551 * 13 11 10 15 15 C 1.52892 * 113.21813 * 183.76197 * 13 11 10 16 16 C 1.51424 * 84.72836 * 244.76064 * 15 13 11 17 17 C 1.38954 * 145.52757 * 179.97438 * 16 15 13 18 18 C 1.37978 * 120.32296 * 180.02562 * 17 16 15 19 19 C 1.38235 * 120.17940 * 359.97438 * 18 17 16 20 20 C 1.38172 * 119.74704 * 359.97438 * 19 18 17 21 21 C 1.38236 * 120.12928 * 0.02604 * 20 19 18 22 22 C 1.53777 * 113.61529 * 196.71475 * 9 7 2 23 23 C 1.53956 * 87.01921 * 89.23009 * 22 9 7 24 24 C 1.53781 * 87.11131 * 25.36589 * 23 22 9 25 25 H 0.97003 * 119.99929 * 359.97438 * 1 2 3 26 26 H 1.08995 * 113.99026 * 358.70824 * 15 13 11 27 27 H 1.09004 * 113.98684 * 130.81970 * 15 13 11 28 28 H 1.07998 * 119.83662 * 0.03275 * 17 16 15 29 29 H 1.07999 * 119.90661 * 179.97438 * 18 17 16 30 30 H 1.07999 * 120.12489 * 180.02562 * 19 18 17 31 31 H 1.08004 * 119.93790 * 179.97438 * 20 19 18 32 32 H 1.09001 * 113.61692 * 203.74949 * 22 9 7 33 33 H 1.09005 * 113.61495 * 334.65565 * 22 9 7 34 34 H 1.08992 * 113.54307 * 270.81374 * 23 22 9 35 35 H 1.08999 * 113.66660 * 139.93032 * 23 22 9 36 36 H 1.09005 * 113.61436 * 220.09139 * 24 23 22 37 37 H 1.08996 * 113.61691 * 89.18341 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4212 2.0900 -1.3973 5 1 1.4864 2.6297 0.7742 6 1 3.5824 1.4196 0.6232 7 6 2.0046 -1.1941 -0.0005 8 1 1.4691 -2.1266 -0.1009 9 6 3.5051 -1.1978 0.1388 10 8 3.9525 -0.7112 1.4316 11 6 3.6264 -1.4471 2.5059 12 8 2.9819 -2.4602 2.3712 13 6 4.0641 -1.0095 3.8799 14 1 5.1129 -0.7139 3.9093 15 6 3.6889 -2.0053 4.9777 16 6 2.8032 -0.8903 5.4926 17 6 1.8965 -0.5079 6.4738 18 6 1.3426 0.7557 6.4560 19 6 1.6868 1.6514 5.4609 20 6 2.5886 1.2769 4.4834 21 6 3.1442 0.0113 4.5000 22 6 4.1592 -2.5251 -0.2798 23 6 4.2417 -1.9429 -1.7026 24 6 4.2358 -0.5507 -1.0495 25 1 -0.4850 0.8401 0.0004 26 1 3.1411 -2.8761 4.6177 27 1 4.5124 -2.2609 5.6445 28 1 1.6242 -1.2031 7.2540 29 1 0.6383 1.0457 7.2217 30 1 1.2530 2.6404 5.4482 31 1 2.8593 1.9741 3.7042 32 1 5.1331 -2.6958 0.1792 33 1 3.4944 -3.3849 -0.1967 34 1 3.3579 -2.1451 -2.3076 35 1 5.1722 -2.1791 -2.2188 36 1 3.6327 0.1812 -1.5869 37 1 5.2305 -0.1806 -0.8013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810858997.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:35 Heat of formation + Delta-G solvation = -10.663189 kcal Electronic energy + Delta-G solvation = -21253.414718 eV Core-core repulsion = 18155.382854 eV Total energy + Delta-G solvation = -3098.031864 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.12043 -40.85559 -38.97703 -36.47963 -36.07713 -34.56572 -31.78231 -29.10812 -28.47714 -26.74404 -26.67786 -24.59871 -23.27878 -22.09683 -20.64449 -20.52246 -19.15978 -18.01821 -17.76058 -17.37692 -17.03777 -16.32428 -16.10581 -15.62120 -15.42862 -15.17359 -14.92322 -14.05999 -14.00402 -13.67636 -13.57323 -13.37469 -13.13771 -12.98248 -12.86676 -12.83226 -12.38485 -12.01044 -11.97350 -11.83323 -11.71620 -11.60628 -11.26033 -11.04570 -10.68802 -10.56767 -9.82562 -9.58119 -8.45175 -6.56735 0.26531 0.37339 1.24273 1.26997 1.49338 1.50587 2.08080 2.27524 2.77036 2.95300 3.09192 3.41699 3.45758 3.77993 3.83968 4.00946 4.11551 4.12970 4.14772 4.22734 4.42973 4.58059 4.64326 4.75786 4.76227 4.81346 4.89923 4.98275 5.02176 5.10874 5.11820 5.20340 5.40583 5.50283 5.52176 5.60294 5.68670 5.83952 6.01380 6.28602 6.53875 7.10576 7.19672 8.69910 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.019448 B = 0.007906 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.397792 B = 3540.890176 C = 4315.576913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.030 3.970 3 Si 0.924 3.076 4 H -0.261 1.261 5 H -0.293 1.293 6 H -0.217 1.217 7 C -0.510 4.510 8 H 0.027 0.973 9 C 0.178 3.822 10 O -0.367 6.367 11 C 0.465 3.535 12 O -0.528 6.528 13 C -0.045 4.045 14 H 0.151 0.849 15 C -0.047 4.047 16 C -0.131 4.131 17 C -0.108 4.108 18 C -0.112 4.112 19 C -0.127 4.127 20 C -0.106 4.106 21 C -0.153 4.153 22 C -0.142 4.142 23 C -0.109 4.109 24 C -0.128 4.128 25 H 0.269 0.731 26 H 0.094 0.906 27 H 0.144 0.856 28 H 0.147 0.853 29 H 0.160 0.840 30 H 0.149 0.851 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.057 0.943 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.945 2.408 10.797 15.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.170 4.170 3 Si 0.747 3.253 4 H -0.186 1.186 5 H -0.219 1.219 6 H -0.139 1.139 7 C -0.547 4.547 8 H 0.045 0.955 9 C 0.144 3.856 10 O -0.285 6.285 11 C 0.308 3.692 12 O -0.417 6.417 13 C -0.063 4.063 14 H 0.168 0.832 15 C -0.084 4.084 16 C -0.131 4.131 17 C -0.125 4.125 18 C -0.130 4.130 19 C -0.145 4.145 20 C -0.124 4.124 21 C -0.153 4.153 22 C -0.179 4.179 23 C -0.146 4.146 24 C -0.165 4.165 25 H 0.078 0.922 26 H 0.112 0.888 27 H 0.162 0.838 28 H 0.164 0.836 29 H 0.178 0.822 30 H 0.167 0.833 31 H 0.128 0.872 32 H 0.108 0.892 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.075 0.925 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.595 2.200 10.696 15.216 hybrid contribution -0.787 0.624 -0.458 1.104 sum 9.808 2.824 10.239 14.457 Atomic orbital electron populations 1.70077 1.08438 1.28432 1.49964 1.25885 0.95364 1.03296 0.92468 0.86133 0.81662 0.78216 0.79335 1.18633 1.21945 1.13917 1.20843 0.90178 0.92963 1.50714 0.95453 1.21733 0.92460 0.94077 0.77370 1.86531 1.71320 1.53169 1.17443 1.23444 0.76624 0.81482 0.87629 1.90572 1.36759 1.27073 1.87290 1.21277 1.02121 0.94961 0.87988 0.83157 1.21811 0.98433 0.94723 0.93390 1.22620 0.97786 0.96905 0.95782 1.20902 0.95963 0.97118 0.98544 1.21405 0.99606 0.92933 0.99032 1.21350 0.97210 1.01363 0.94531 1.20504 0.97599 0.94982 0.99309 1.21388 1.00469 0.94971 0.98508 1.23343 0.99751 0.96904 0.97929 1.22468 1.02695 0.94505 0.94971 1.23318 1.00338 0.97997 0.94896 0.92237 0.88788 0.83837 0.83560 0.82232 0.83295 0.87163 0.89223 0.93796 0.91160 0.87669 0.92471 0.87922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.99 13.96 21.45 0.30 -59.69 16 2 C 0.03 1.82 5.47 84.65 0.46 2.28 16 3 Si 0.92 45.01 24.55 68.60 1.68 46.69 16 4 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.22 -9.85 5.61 99.48 0.56 -9.29 16 7 C -0.51 -30.58 7.77 25.60 0.20 -30.38 16 8 H 0.03 1.88 8.05 -2.91 -0.02 1.86 16 9 C 0.18 8.61 0.23 -11.02 0.00 8.61 16 10 O -0.37 -17.20 8.22 -51.44 -0.42 -17.62 16 11 C 0.46 20.90 7.02 71.23 0.50 21.40 16 12 O -0.53 -27.36 14.12 21.95 0.31 -27.05 16 13 C -0.04 -1.50 4.25 -14.66 -0.06 -1.56 16 14 H 0.15 3.89 8.14 -2.39 -0.02 3.87 16 15 C -0.05 -1.32 7.91 30.04 0.24 -1.08 16 16 C -0.13 -4.08 7.32 -21.79 -0.16 -4.24 16 17 C -0.11 -2.86 10.05 22.38 0.22 -2.63 16 18 C -0.11 -2.80 10.03 22.21 0.22 -2.58 16 19 C -0.13 -3.62 10.06 22.25 0.22 -3.40 16 20 C -0.11 -3.69 10.04 22.25 0.22 -3.46 16 21 C -0.15 -5.45 7.06 -19.82 -0.14 -5.59 16 22 C -0.14 -5.92 6.51 31.18 0.20 -5.72 16 23 C -0.11 -3.94 7.81 31.18 0.24 -3.70 16 24 C -0.13 -5.13 6.01 31.12 0.19 -4.94 16 25 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 26 H 0.09 3.03 7.03 -2.39 -0.02 3.01 16 27 H 0.14 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 29 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 30 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 31 H 0.11 3.87 8.06 -2.91 -0.02 3.84 16 32 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.04 2.03 8.09 -2.38 -0.02 2.01 16 34 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 36 H 0.06 2.41 5.59 -2.38 -0.01 2.40 16 37 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -77.77 306.34 5.35 -72.42 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.92 Total: 22.26 kcal Atomic # 6 Polarization: -39.57 SS G_CDS: 2.56 Total: -37.01 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: 0.30 Total: -59.69 kcal Atomic # 8 Polarization: -44.56 SS G_CDS: -0.11 Total: -44.67 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.68 Total: 46.69 kcal Total: -77.77 5.35 -72.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810858997.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.757 kcal (2) G-P(sol) polarization free energy of solvation -77.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds