Wall clock time and date at job start Mon Mar 30 2020 01:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99992 * 2 1 4 4 H 1.48498 * 109.46691 * 269.14058 * 3 2 1 5 5 H 1.48502 * 109.47113 * 29.13685 * 3 2 1 6 6 H 1.48491 * 109.47144 * 149.14083 * 3 2 1 7 7 C 1.37871 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00258 * 5.93243 * 7 2 1 9 9 C 1.50698 * 120.00266 * 185.92507 * 7 2 1 10 10 O 1.45200 * 112.84843 * 63.50240 * 9 7 2 11 11 C 1.34226 * 116.99965 * 65.43344 * 10 9 7 12 12 O 1.20827 * 120.00032 * 4.87029 * 11 10 9 13 13 C 1.50697 * 120.00100 * 184.86048 * 11 10 9 14 14 H 1.09001 * 112.50807 * 41.89633 * 13 11 10 15 15 C 1.52886 * 113.16642 * 171.79473 * 13 11 10 16 16 C 1.51425 * 84.73264 * 115.22722 * 15 13 11 17 17 C 1.38946 * 145.53193 * 180.02562 * 16 15 13 18 18 C 1.37978 * 120.32294 * 179.73345 * 17 16 15 19 19 C 1.38241 * 120.18055 * 0.48380 * 18 17 16 20 20 C 1.38179 * 119.74356 * 359.48257 * 19 18 17 21 21 C 1.38236 * 120.12703 * 0.27397 * 20 19 18 22 22 C 1.53776 * 113.61813 * 194.70151 * 9 7 2 23 23 C 1.53952 * 87.02143 * 89.22949 * 22 9 7 24 24 C 1.53780 * 87.10984 * 25.36368 * 23 22 9 25 25 H 0.96999 * 119.99962 * 0.02562 * 1 2 3 26 26 H 1.09006 * 113.99424 * 229.17411 * 15 13 11 27 27 H 1.09001 * 113.98882 * 1.28312 * 15 13 11 28 28 H 1.08003 * 119.83863 * 359.93595 * 17 16 15 29 29 H 1.08009 * 119.91022 * 180.24493 * 18 17 16 30 30 H 1.07997 * 120.12628 * 179.76197 * 19 18 17 31 31 H 1.07994 * 119.93499 * 180.30431 * 20 19 18 32 32 H 1.09000 * 113.61881 * 203.75304 * 22 9 7 33 33 H 1.09004 * 113.61368 * 334.64821 * 22 9 7 34 34 H 1.08998 * 113.53580 * 270.81378 * 23 22 9 35 35 H 1.09001 * 113.74192 * 139.94989 * 23 22 9 36 36 H 1.08998 * 113.61215 * 220.09001 * 24 23 22 37 37 H 1.09000 * 113.61345 * 89.18907 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5148 2.0359 -1.3999 5 1 1.4376 2.6579 0.6817 6 1 3.5374 1.4455 0.7181 7 6 2.0045 -1.1940 0.0005 8 1 1.4689 -2.1269 -0.0957 9 6 3.5055 -1.1975 0.1353 10 8 3.9586 -0.6638 1.4073 11 6 3.6356 -1.3586 2.5094 12 8 3.0725 -2.4230 2.4092 13 6 3.9754 -0.8114 3.8718 14 1 3.7805 0.2580 3.9524 15 6 3.3659 -1.6229 5.0151 16 6 4.8035 -1.9343 5.3747 17 6 5.6450 -2.6042 6.2542 18 6 7.0139 -2.5408 6.0933 19 6 7.5587 -1.8010 5.0603 20 6 6.7266 -1.1334 4.1822 21 6 5.3548 -1.2003 4.3394 22 6 4.1542 -2.5416 -0.2351 23 6 4.2338 -2.0138 -1.6791 24 6 4.2343 -0.5980 -1.0789 25 1 -0.4850 0.8400 -0.0004 26 1 2.8440 -1.0195 5.7579 27 1 2.7933 -2.4904 4.6867 28 1 5.2255 -3.1801 7.0659 29 1 7.6617 -3.0674 6.7786 30 1 8.6304 -1.7489 4.9375 31 1 7.1487 -0.5586 3.3712 32 1 5.1289 -2.6981 0.2270 33 1 3.4870 -3.3956 -0.1174 34 1 3.3473 -2.2359 -2.2732 35 1 5.1614 -2.2719 -2.1902 36 1 3.6318 0.1150 -1.6416 37 1 5.2311 -0.2220 -0.8480 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810858998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:38 Heat of formation + Delta-G solvation = 7.833775 kcal Electronic energy + Delta-G solvation = -21023.595212 eV Core-core repulsion = 17926.365436 eV Total energy + Delta-G solvation = -3097.229776 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.80834 -39.25531 -37.30969 -35.16777 -34.39428 -32.37944 -30.76302 -27.71106 -26.72327 -25.34113 -24.93786 -22.97365 -21.95796 -20.86397 -19.28328 -18.58337 -17.40208 -16.73796 -16.16810 -15.49813 -15.25248 -15.17494 -14.60707 -14.08307 -13.88411 -13.58175 -13.01384 -12.90928 -12.79212 -12.41042 -12.08875 -11.77850 -11.70434 -11.36793 -11.12677 -10.98424 -10.93484 -10.64636 -10.39565 -10.20856 -9.99988 -9.79957 -9.58495 -9.04908 -8.80597 -8.77407 -8.60063 -8.44987 -6.23905 -4.31292 1.32184 1.40761 3.10594 3.23739 3.34649 3.48681 3.66183 3.91136 4.28378 4.35993 4.47072 4.70997 5.01961 5.06956 5.12856 5.38700 5.50734 5.51576 5.61152 5.64385 5.69962 5.74995 5.84694 5.94258 6.07479 6.17937 6.27295 6.37986 6.38970 6.39557 6.49026 6.65422 6.78539 6.84517 6.95850 6.99751 7.24356 7.50463 7.77244 8.36442 8.82616 8.95897 9.37974 10.86214 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.023064 B = 0.006244 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.730341 B = 4483.198322 C = 4844.183209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.084 3.916 3 Si 0.862 3.138 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.234 1.234 7 C -0.508 4.508 8 H 0.085 0.915 9 C 0.199 3.801 10 O -0.364 6.364 11 C 0.478 3.522 12 O -0.492 6.492 13 C -0.047 4.047 14 H 0.119 0.881 15 C -0.061 4.061 16 C -0.115 4.115 17 C -0.102 4.102 18 C -0.118 4.118 19 C -0.123 4.123 20 C -0.082 4.082 21 C -0.116 4.116 22 C -0.143 4.143 23 C -0.125 4.125 24 C -0.134 4.134 25 H 0.267 0.733 26 H 0.101 0.899 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.678 -1.025 9.098 15.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.121 4.121 3 Si 0.689 3.311 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.157 1.157 7 C -0.545 4.545 8 H 0.103 0.897 9 C 0.165 3.835 10 O -0.281 6.281 11 C 0.319 3.681 12 O -0.379 6.379 13 C -0.066 4.066 14 H 0.137 0.863 15 C -0.098 4.098 16 C -0.115 4.115 17 C -0.120 4.120 18 C -0.136 4.136 19 C -0.141 4.141 20 C -0.100 4.100 21 C -0.116 4.116 22 C -0.181 4.181 23 C -0.163 4.163 24 C -0.171 4.171 25 H 0.077 0.923 26 H 0.119 0.881 27 H 0.133 0.867 28 H 0.136 0.864 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.368 -1.264 9.011 15.354 hybrid contribution 0.282 0.957 -0.086 1.001 sum 12.650 -0.307 8.925 15.484 Atomic orbital electron populations 1.69930 1.06497 1.27535 1.47492 1.25021 0.94686 0.99479 0.92922 0.87098 0.82229 0.82886 0.78914 1.20298 1.21772 1.15658 1.20807 0.87283 0.95216 1.51200 0.89717 1.21672 0.94599 0.90522 0.76708 1.86581 1.71225 1.53755 1.16578 1.22308 0.76276 0.83426 0.86137 1.90574 1.37733 1.22170 1.87406 1.21074 0.91353 1.02573 0.91622 0.86345 1.21808 0.92503 1.00632 0.94850 1.22418 0.96700 0.96770 0.95615 1.20507 0.92703 0.99711 0.99119 1.20944 0.94511 0.99615 0.98520 1.20972 0.99377 0.98195 0.95509 1.20267 0.91012 0.99449 0.99263 1.21268 0.93186 0.99500 0.97645 1.23321 0.99535 0.99343 0.95858 1.22529 1.00987 0.96408 0.96334 1.23272 0.99485 0.97322 0.97068 0.92278 0.88098 0.86672 0.86409 0.85866 0.85606 0.86043 0.91978 0.91147 0.89578 0.92469 0.91202 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.40 13.96 55.43 0.77 -25.63 16 2 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 3 Si 0.86 21.15 24.63 -169.99 -4.19 16.96 16 4 H -0.28 -6.58 7.05 56.52 0.40 -6.18 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.23 -5.52 5.73 56.52 0.32 -5.20 16 7 C -0.51 -14.34 7.90 -34.44 -0.27 -14.61 16 8 H 0.08 2.66 8.05 -52.48 -0.42 2.23 16 9 C 0.20 4.81 0.24 -90.96 -0.02 4.79 16 10 O -0.36 -8.63 7.96 -39.25 -0.31 -8.95 16 11 C 0.48 10.70 6.99 36.00 0.25 10.95 16 12 O -0.49 -12.25 14.16 -18.75 -0.27 -12.51 16 13 C -0.05 -0.83 4.26 -96.59 -0.41 -1.24 16 14 H 0.12 1.89 8.14 -51.93 -0.42 1.47 16 15 C -0.06 -0.93 7.91 -27.59 -0.22 -1.15 16 16 C -0.11 -1.71 7.32 -107.59 -0.79 -2.50 16 17 C -0.10 -1.30 10.05 -39.41 -0.40 -1.69 16 18 C -0.12 -1.34 10.03 -39.68 -0.40 -1.74 16 19 C -0.12 -1.45 10.06 -39.60 -0.40 -1.85 16 20 C -0.08 -1.16 10.04 -39.60 -0.40 -1.55 16 21 C -0.12 -1.86 7.05 -104.55 -0.74 -2.60 16 22 C -0.14 -3.09 6.37 -25.83 -0.16 -3.26 16 23 C -0.13 -2.42 7.81 -25.83 -0.20 -2.62 16 24 C -0.13 -2.85 6.20 -25.92 -0.16 -3.01 16 25 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.12 1.91 7.05 -51.93 -0.37 1.54 16 28 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 29 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 30 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.07 1.61 8.09 -51.93 -0.42 1.19 16 34 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.54 5.83 -51.93 -0.30 1.24 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 306.67 15.07 4.62 4.62 Total: -1.00 -32.22 306.67 -8.73 -40.96 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.95 Total: 4.30 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -4.41 Total: -19.76 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.77 Total: -25.63 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.58 Total: -21.46 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.19 Total: 16.96 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.22 -8.73 -40.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810858998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.791 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds