Wall clock time and date at job start Mon Mar 30 2020 01:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99992 * 2 1 4 4 H 1.48498 * 109.46691 * 269.14058 * 3 2 1 5 5 H 1.48502 * 109.47113 * 29.13685 * 3 2 1 6 6 H 1.48491 * 109.47144 * 149.14083 * 3 2 1 7 7 C 1.37871 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00258 * 5.93243 * 7 2 1 9 9 C 1.50698 * 120.00266 * 185.92507 * 7 2 1 10 10 O 1.45200 * 112.84843 * 63.50240 * 9 7 2 11 11 C 1.34226 * 116.99965 * 65.43344 * 10 9 7 12 12 O 1.20827 * 120.00032 * 4.87029 * 11 10 9 13 13 C 1.50697 * 120.00100 * 184.86048 * 11 10 9 14 14 H 1.09001 * 112.50807 * 41.89633 * 13 11 10 15 15 C 1.52886 * 113.16642 * 171.79473 * 13 11 10 16 16 C 1.51425 * 84.73264 * 115.22722 * 15 13 11 17 17 C 1.38946 * 145.53193 * 180.02562 * 16 15 13 18 18 C 1.37978 * 120.32294 * 179.73345 * 17 16 15 19 19 C 1.38241 * 120.18055 * 0.48380 * 18 17 16 20 20 C 1.38179 * 119.74356 * 359.48257 * 19 18 17 21 21 C 1.38236 * 120.12703 * 0.27397 * 20 19 18 22 22 C 1.53776 * 113.61813 * 194.70151 * 9 7 2 23 23 C 1.53952 * 87.02143 * 89.22949 * 22 9 7 24 24 C 1.53780 * 87.10984 * 25.36368 * 23 22 9 25 25 H 0.96999 * 119.99962 * 0.02562 * 1 2 3 26 26 H 1.09006 * 113.99424 * 229.17411 * 15 13 11 27 27 H 1.09001 * 113.98882 * 1.28312 * 15 13 11 28 28 H 1.08003 * 119.83863 * 359.93595 * 17 16 15 29 29 H 1.08009 * 119.91022 * 180.24493 * 18 17 16 30 30 H 1.07997 * 120.12628 * 179.76197 * 19 18 17 31 31 H 1.07994 * 119.93499 * 180.30431 * 20 19 18 32 32 H 1.09000 * 113.61881 * 203.75304 * 22 9 7 33 33 H 1.09004 * 113.61368 * 334.64821 * 22 9 7 34 34 H 1.08998 * 113.53580 * 270.81378 * 23 22 9 35 35 H 1.09001 * 113.74192 * 139.94989 * 23 22 9 36 36 H 1.08998 * 113.61215 * 220.09001 * 24 23 22 37 37 H 1.09000 * 113.61345 * 89.18907 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5148 2.0359 -1.3999 5 1 1.4376 2.6579 0.6817 6 1 3.5374 1.4455 0.7181 7 6 2.0045 -1.1940 0.0005 8 1 1.4689 -2.1269 -0.0957 9 6 3.5055 -1.1975 0.1353 10 8 3.9586 -0.6638 1.4073 11 6 3.6356 -1.3586 2.5094 12 8 3.0725 -2.4230 2.4092 13 6 3.9754 -0.8114 3.8718 14 1 3.7805 0.2580 3.9524 15 6 3.3659 -1.6229 5.0151 16 6 4.8035 -1.9343 5.3747 17 6 5.6450 -2.6042 6.2542 18 6 7.0139 -2.5408 6.0933 19 6 7.5587 -1.8010 5.0603 20 6 6.7266 -1.1334 4.1822 21 6 5.3548 -1.2003 4.3394 22 6 4.1542 -2.5416 -0.2351 23 6 4.2338 -2.0138 -1.6791 24 6 4.2343 -0.5980 -1.0789 25 1 -0.4850 0.8400 -0.0004 26 1 2.8440 -1.0195 5.7579 27 1 2.7933 -2.4904 4.6867 28 1 5.2255 -3.1801 7.0659 29 1 7.6617 -3.0674 6.7786 30 1 8.6304 -1.7489 4.9375 31 1 7.1487 -0.5586 3.3712 32 1 5.1289 -2.6981 0.2270 33 1 3.4870 -3.3956 -0.1174 34 1 3.3473 -2.2359 -2.2732 35 1 5.1614 -2.2719 -2.1902 36 1 3.6318 0.1150 -1.6416 37 1 5.2311 -0.2220 -0.8480 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810858998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:37 Heat of formation + Delta-G solvation = -10.260586 kcal Electronic energy + Delta-G solvation = -21024.379843 eV Core-core repulsion = 17926.365436 eV Total energy + Delta-G solvation = -3098.014406 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.13952 -40.86035 -38.97434 -36.48206 -36.07423 -34.56537 -31.75471 -29.07128 -28.50057 -26.75639 -26.67027 -24.61898 -23.21912 -22.07031 -20.67012 -20.50930 -19.18828 -18.03108 -17.72472 -17.32823 -17.07082 -16.33767 -16.02986 -15.62826 -15.39367 -15.19552 -14.89472 -13.99840 -13.96049 -13.79798 -13.57560 -13.36494 -13.04634 -12.96318 -12.89627 -12.80487 -12.43815 -12.05154 -11.96201 -11.84703 -11.69190 -11.59118 -11.27295 -11.01637 -10.69589 -10.56228 -9.79560 -9.56755 -8.43912 -6.57039 0.29454 0.41394 1.27925 1.29571 1.47897 1.54793 2.10528 2.30431 2.80810 2.95357 3.08012 3.41058 3.43626 3.77568 3.82506 3.99557 4.10998 4.15068 4.20310 4.24061 4.41829 4.58135 4.68811 4.73692 4.78865 4.80503 4.89436 4.95347 5.01047 5.10097 5.13482 5.18904 5.45233 5.51113 5.54541 5.59373 5.72358 5.82839 6.04406 6.27494 6.53879 7.09429 7.19239 8.70818 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.023064 B = 0.006244 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.730341 B = 4483.198322 C = 4844.183209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.031 3.969 3 Si 0.925 3.075 4 H -0.258 1.258 5 H -0.291 1.291 6 H -0.218 1.218 7 C -0.514 4.514 8 H 0.029 0.971 9 C 0.179 3.821 10 O -0.366 6.366 11 C 0.468 3.532 12 O -0.529 6.529 13 C -0.052 4.052 14 H 0.130 0.870 15 C -0.059 4.059 16 C -0.129 4.129 17 C -0.108 4.108 18 C -0.110 4.110 19 C -0.118 4.118 20 C -0.095 4.095 21 C -0.146 4.146 22 C -0.141 4.141 23 C -0.109 4.109 24 C -0.128 4.128 25 H 0.271 0.729 26 H 0.129 0.871 27 H 0.091 0.909 28 H 0.140 0.860 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.128 0.872 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.539 -0.090 10.180 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.169 4.169 3 Si 0.747 3.253 4 H -0.183 1.183 5 H -0.217 1.217 6 H -0.140 1.140 7 C -0.551 4.551 8 H 0.047 0.953 9 C 0.145 3.855 10 O -0.284 6.284 11 C 0.312 3.688 12 O -0.418 6.418 13 C -0.071 4.071 14 H 0.148 0.852 15 C -0.095 4.095 16 C -0.129 4.129 17 C -0.126 4.126 18 C -0.128 4.128 19 C -0.135 4.135 20 C -0.113 4.113 21 C -0.146 4.146 22 C -0.179 4.179 23 C -0.147 4.147 24 C -0.165 4.165 25 H 0.080 0.920 26 H 0.147 0.853 27 H 0.110 0.890 28 H 0.158 0.842 29 H 0.178 0.822 30 H 0.177 0.823 31 H 0.146 0.854 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.080 0.920 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 16.246 -0.337 10.090 19.127 hybrid contribution -0.909 0.513 -0.335 1.096 sum 15.336 0.176 9.755 18.177 Atomic orbital electron populations 1.70067 1.08413 1.28668 1.49575 1.25889 0.95385 1.03313 0.92349 0.86123 0.81282 0.77853 0.80032 1.18328 1.21749 1.13984 1.20817 0.89842 0.93148 1.51273 0.95288 1.21728 0.92597 0.93257 0.77917 1.86551 1.71076 1.53889 1.16837 1.23359 0.75037 0.82978 0.87456 1.90555 1.39354 1.23882 1.88050 1.21209 0.93723 1.03277 0.88843 0.85190 1.21780 0.93258 0.99874 0.94604 1.22404 0.96151 0.97786 0.96521 1.20873 0.93306 0.99256 0.99180 1.21434 0.94310 0.98567 0.98471 1.21405 1.00827 0.96791 0.94524 1.20561 0.90421 1.00089 1.00250 1.21235 0.93413 1.01391 0.98538 1.23293 0.99377 0.97171 0.98011 1.22477 1.02692 0.94673 0.94819 1.23297 1.00322 0.98052 0.94841 0.92021 0.85331 0.89033 0.84195 0.82202 0.82287 0.85384 0.90215 0.93959 0.90921 0.87905 0.91961 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.41 13.96 21.45 0.30 -58.11 16 2 C 0.03 1.84 5.47 84.65 0.46 2.30 16 3 Si 0.92 43.77 24.63 68.60 1.69 45.46 16 4 H -0.26 -11.41 7.05 99.48 0.70 -10.71 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 6 H -0.22 -9.66 5.73 99.48 0.57 -9.09 16 7 C -0.51 -30.39 7.90 25.60 0.20 -30.19 16 8 H 0.03 1.97 8.05 -2.91 -0.02 1.95 16 9 C 0.18 8.72 0.24 -11.02 0.00 8.72 16 10 O -0.37 -17.31 7.96 -51.38 -0.41 -17.72 16 11 C 0.47 21.48 6.99 71.24 0.50 21.98 16 12 O -0.53 -27.75 14.16 21.96 0.31 -27.44 16 13 C -0.05 -1.81 4.26 -14.66 -0.06 -1.88 16 14 H 0.13 4.11 8.14 -2.39 -0.02 4.09 16 15 C -0.06 -1.79 7.91 30.04 0.24 -1.55 16 16 C -0.13 -3.68 7.32 -21.79 -0.16 -3.84 16 17 C -0.11 -2.44 10.05 22.38 0.22 -2.21 16 18 C -0.11 -2.04 10.03 22.21 0.22 -1.82 16 19 C -0.12 -2.32 10.06 22.26 0.22 -2.09 16 20 C -0.10 -2.47 10.04 22.26 0.22 -2.24 16 21 C -0.15 -4.52 7.05 -19.82 -0.14 -4.66 16 22 C -0.14 -6.11 6.37 31.18 0.20 -5.91 16 23 C -0.11 -4.03 7.81 31.18 0.24 -3.79 16 24 C -0.13 -5.14 6.20 31.12 0.19 -4.95 16 25 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 26 H 0.13 3.04 8.14 -2.38 -0.02 3.02 16 27 H 0.09 3.20 7.05 -2.39 -0.02 3.18 16 28 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 29 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 30 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 31 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 32 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.04 2.02 8.09 -2.38 -0.02 2.01 16 34 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.06 2.60 5.83 -2.39 -0.01 2.59 16 37 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -74.76 306.67 5.38 -69.38 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.92 Total: 20.54 kcal Atomic # 6 Polarization: -34.69 SS G_CDS: 2.57 Total: -32.13 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.30 Total: -58.11 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: -0.10 Total: -45.15 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.69 Total: 45.46 kcal Total: -74.76 5.38 -69.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810858998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.119 kcal (2) G-P(sol) polarization free energy of solvation -74.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds