Wall clock time and date at job start Mon Mar 30 2020 01:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 120.00025 * 2 1 4 4 H 1.48505 * 109.46938 * 269.99432 * 3 2 1 5 5 H 1.48495 * 109.47378 * 30.00159 * 3 2 1 6 6 H 1.48510 * 109.47062 * 150.00056 * 3 2 1 7 7 C 1.38805 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00250 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99554 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99769 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47241 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47278 * 179.97438 * 11 10 9 13 13 O 1.45192 * 109.47109 * 180.02562 * 12 11 10 14 14 C 1.34230 * 117.00018 * 180.02562 * 13 12 11 15 15 O 1.20826 * 120.00015 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00046 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.52992 * 109.47482 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47482 * 179.97438 * 18 17 16 20 20 C 1.53002 * 117.50015 * 243.74696 * 19 18 17 21 21 C 1.53008 * 117.50075 * 175.09104 * 19 18 17 22 22 H 0.97004 * 119.99685 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47089 * 59.99606 * 10 9 7 24 24 H 1.09008 * 109.46987 * 300.00321 * 10 9 7 25 25 H 1.09005 * 109.46784 * 59.99884 * 11 10 9 26 26 H 1.08998 * 109.46854 * 300.00340 * 11 10 9 27 27 H 1.09001 * 109.46829 * 59.99637 * 12 11 10 28 28 H 1.08998 * 109.47230 * 300.00373 * 12 11 10 29 29 H 1.09002 * 109.47060 * 299.99765 * 16 14 13 30 30 H 1.09001 * 109.47380 * 59.99853 * 16 14 13 31 31 H 1.09002 * 109.47153 * 299.99998 * 17 16 14 32 32 H 1.08998 * 109.47533 * 59.99628 * 17 16 14 33 33 H 1.09002 * 109.47103 * 300.00247 * 18 17 16 34 34 H 1.09001 * 109.47066 * 60.00169 * 18 17 16 35 35 H 1.08997 * 115.55067 * 29.41999 * 19 18 17 36 36 H 1.09000 * 117.49856 * 359.97438 * 20 19 18 37 37 H 1.08999 * 117.49661 * 145.01806 * 20 19 18 38 38 H 1.08999 * 117.49506 * 214.98514 * 21 19 18 39 39 H 1.09002 * 117.49810 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5157 -3.8915 0.0029 11 6 1.9792 -5.3243 0.0036 12 6 3.1512 -6.3078 0.0038 13 8 2.6420 -7.6675 0.0038 14 6 3.5483 -8.6576 0.0045 15 8 4.7281 -8.3968 0.0047 16 6 3.0944 -10.0947 0.0040 17 6 4.3163 -11.0155 0.0044 18 6 3.8555 -12.4744 0.0045 19 6 5.0773 -13.3952 0.0042 20 6 5.2800 -14.2998 -1.2130 21 6 4.8278 -14.9003 0.1204 22 1 -0.4850 0.8401 -0.0004 23 1 3.1244 -3.7306 0.8928 24 1 3.1244 -3.7321 -0.8872 25 1 1.3708 -5.4848 -0.8865 26 1 1.3703 -5.4838 0.8934 27 1 3.7600 -6.1473 0.8936 28 1 3.7598 -6.1481 -0.8863 29 1 2.4942 -10.2864 0.8934 30 1 2.4958 -10.2863 -0.8865 31 1 4.9161 -10.8236 -0.8853 32 1 4.9153 -10.8240 0.8946 33 1 3.2559 -12.6660 0.8943 34 1 3.2563 -12.6662 -0.8857 35 1 5.9684 -12.9941 0.4870 36 1 4.5426 -14.2392 -2.0134 37 1 6.3044 -14.4940 -1.5307 38 1 5.5549 -15.4893 0.6794 39 1 3.7931 -15.2344 0.1974 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812602196.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:21 Heat of formation + Delta-G solvation = -101.216721 kcal Electronic energy + Delta-G solvation = -17282.098514 eV Core-core repulsion = 14315.583906 eV Total energy + Delta-G solvation = -2966.514609 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.123 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.49298 -38.17365 -36.81017 -34.22369 -33.46086 -32.44822 -28.92545 -26.44927 -25.43963 -23.17052 -22.72318 -21.33496 -20.87617 -20.53832 -17.76563 -17.34998 -16.90767 -16.46552 -15.90642 -15.40120 -14.82610 -14.75915 -14.43421 -14.25659 -13.37341 -13.15484 -12.84114 -12.68518 -12.39965 -12.10599 -12.05486 -11.92224 -11.47490 -11.32770 -11.23053 -11.13735 -10.98365 -10.91436 -10.70020 -10.65283 -10.44416 -10.28047 -10.25287 -9.63225 -9.08148 -8.36265 -6.57017 -6.25302 -3.96356 2.15849 2.59029 3.21029 3.21952 3.28510 3.39797 3.54315 4.18943 4.19945 4.43880 4.51716 4.56793 4.69858 4.83018 4.92148 5.10092 5.12674 5.19510 5.19969 5.24534 5.27596 5.36607 5.37659 5.42129 5.49516 5.54441 5.71069 5.77205 5.78041 5.86221 5.91506 6.00390 6.17305 6.44896 6.47631 6.67939 7.58617 7.72494 8.34371 9.21092 10.82846 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.078475 B = 0.002063 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.717538 B =13569.209614 C =13811.783323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.073 0.927 9 S -0.124 6.124 10 C -0.115 4.115 11 C -0.098 4.098 12 C 0.072 3.928 13 O -0.357 6.357 14 C 0.458 3.542 15 O -0.512 6.512 16 C -0.115 4.115 17 C -0.106 4.106 18 C -0.089 4.089 19 C -0.153 4.153 20 C -0.182 4.182 21 C -0.183 4.183 22 H 0.268 0.732 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.893 -26.071 -0.251 26.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.667 4.667 8 H 0.092 0.908 9 S 0.104 5.896 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.003 4.003 13 O -0.274 6.274 14 C 0.301 3.699 15 O -0.401 6.401 16 C -0.152 4.152 17 C -0.144 4.144 18 C -0.126 4.126 19 C -0.171 4.171 20 C -0.219 4.219 21 C -0.220 4.220 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.948 -26.011 -0.247 26.683 hybrid contribution 2.024 1.409 -0.018 2.466 sum 7.972 -24.602 -0.265 25.863 Atomic orbital electron populations 1.70020 1.05927 1.27407 1.47117 1.25020 0.95100 0.99125 0.94515 0.86145 0.79436 0.81427 0.78393 1.20238 1.20719 1.19668 1.22703 0.94604 0.90689 1.58703 0.90835 1.84647 1.08820 0.99235 1.96882 1.23185 1.03419 0.96392 1.03330 1.21282 0.96468 0.91583 1.04279 1.23255 0.97709 0.76792 1.02522 1.86483 1.40474 1.16989 1.83431 1.23743 0.84727 0.89008 0.72434 1.90667 1.18772 1.85193 1.45449 1.21426 1.00628 0.87266 1.05928 1.21414 0.96255 0.92700 1.04040 1.21183 0.95938 0.93148 1.02370 1.22342 1.00403 0.91657 1.02707 1.23059 1.02493 1.04591 0.91739 1.22982 1.02415 0.95828 1.00776 0.92247 0.91740 0.91751 0.90375 0.90367 0.91219 0.91226 0.87641 0.87678 0.90808 0.90876 0.91224 0.91504 0.87676 0.88745 0.88953 0.88929 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.88 13.22 55.49 0.73 -25.15 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.52 -14.87 9.50 30.94 0.29 -14.58 16 8 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 9 S -0.12 -3.23 21.44 -107.50 -2.30 -5.53 16 10 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 11 C -0.10 -1.61 5.60 -26.73 -0.15 -1.76 16 12 C 0.07 1.06 5.47 37.16 0.20 1.26 16 13 O -0.36 -4.92 10.22 -39.26 -0.40 -5.32 16 14 C 0.46 5.71 7.96 36.01 0.29 6.00 16 15 O -0.51 -7.87 15.73 -18.75 -0.29 -8.17 16 16 C -0.11 -0.91 5.81 -27.88 -0.16 -1.07 16 17 C -0.11 -0.81 4.46 -26.74 -0.12 -0.93 16 18 C -0.09 -0.53 5.50 -26.74 -0.15 -0.68 16 19 C -0.15 -0.98 5.73 -90.62 -0.52 -1.50 16 20 C -0.18 -1.09 10.18 -26.69 -0.27 -1.36 16 21 C -0.18 -1.05 10.25 -26.69 -0.27 -1.32 16 22 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 24 H 0.06 1.27 8.14 -51.91 -0.42 0.85 16 25 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 28 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 29 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 32 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.36 7.87 -51.93 -0.41 -0.05 16 35 H 0.11 0.70 8.08 -51.93 -0.42 0.28 16 36 H 0.09 0.53 8.03 -51.93 -0.42 0.11 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 347.09 15.07 5.23 5.23 Total: -1.00 -32.14 347.09 -9.51 -41.65 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -6.70 Total: -3.12 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -0.74 Total: -16.10 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.73 Total: -25.15 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.70 Total: -13.49 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -2.30 Total: -5.53 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.14 -9.51 -41.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812602196.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.567 kcal (2) G-P(sol) polarization free energy of solvation -32.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds