Wall clock time and date at job start Mon Mar 30 2020 01:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 120.00025 * 2 1 4 4 H 1.48505 * 109.46938 * 269.99432 * 3 2 1 5 5 H 1.48495 * 109.47378 * 30.00159 * 3 2 1 6 6 H 1.48510 * 109.47062 * 150.00056 * 3 2 1 7 7 C 1.38805 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00250 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99554 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99769 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47241 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47278 * 179.97438 * 11 10 9 13 13 O 1.45192 * 109.47109 * 180.02562 * 12 11 10 14 14 C 1.34230 * 117.00018 * 180.02562 * 13 12 11 15 15 O 1.20826 * 120.00015 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00046 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.52992 * 109.47482 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47482 * 179.97438 * 18 17 16 20 20 C 1.53002 * 117.50015 * 243.74696 * 19 18 17 21 21 C 1.53008 * 117.50075 * 175.09104 * 19 18 17 22 22 H 0.97004 * 119.99685 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47089 * 59.99606 * 10 9 7 24 24 H 1.09008 * 109.46987 * 300.00321 * 10 9 7 25 25 H 1.09005 * 109.46784 * 59.99884 * 11 10 9 26 26 H 1.08998 * 109.46854 * 300.00340 * 11 10 9 27 27 H 1.09001 * 109.46829 * 59.99637 * 12 11 10 28 28 H 1.08998 * 109.47230 * 300.00373 * 12 11 10 29 29 H 1.09002 * 109.47060 * 299.99765 * 16 14 13 30 30 H 1.09001 * 109.47380 * 59.99853 * 16 14 13 31 31 H 1.09002 * 109.47153 * 299.99998 * 17 16 14 32 32 H 1.08998 * 109.47533 * 59.99628 * 17 16 14 33 33 H 1.09002 * 109.47103 * 300.00247 * 18 17 16 34 34 H 1.09001 * 109.47066 * 60.00169 * 18 17 16 35 35 H 1.08997 * 115.55067 * 29.41999 * 19 18 17 36 36 H 1.09000 * 117.49856 * 359.97438 * 20 19 18 37 37 H 1.08999 * 117.49661 * 145.01806 * 20 19 18 38 38 H 1.08999 * 117.49506 * 214.98514 * 21 19 18 39 39 H 1.09002 * 117.49810 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5157 -3.8915 0.0029 11 6 1.9792 -5.3243 0.0036 12 6 3.1512 -6.3078 0.0038 13 8 2.6420 -7.6675 0.0038 14 6 3.5483 -8.6576 0.0045 15 8 4.7281 -8.3968 0.0047 16 6 3.0944 -10.0947 0.0040 17 6 4.3163 -11.0155 0.0044 18 6 3.8555 -12.4744 0.0045 19 6 5.0773 -13.3952 0.0042 20 6 5.2800 -14.2998 -1.2130 21 6 4.8278 -14.9003 0.1204 22 1 -0.4850 0.8401 -0.0004 23 1 3.1244 -3.7306 0.8928 24 1 3.1244 -3.7321 -0.8872 25 1 1.3708 -5.4848 -0.8865 26 1 1.3703 -5.4838 0.8934 27 1 3.7600 -6.1473 0.8936 28 1 3.7598 -6.1481 -0.8863 29 1 2.4942 -10.2864 0.8934 30 1 2.4958 -10.2863 -0.8865 31 1 4.9161 -10.8236 -0.8853 32 1 4.9153 -10.8240 0.8946 33 1 3.2559 -12.6660 0.8943 34 1 3.2563 -12.6662 -0.8857 35 1 5.9684 -12.9941 0.4870 36 1 4.5426 -14.2392 -2.0134 37 1 6.3044 -14.4940 -1.5307 38 1 5.5549 -15.4893 0.6794 39 1 3.7931 -15.2344 0.1974 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812602196.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:20 Heat of formation + Delta-G solvation = -117.256310 kcal Electronic energy + Delta-G solvation = -17282.794043 eV Core-core repulsion = 14315.583906 eV Total energy + Delta-G solvation = -2967.210137 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.123 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.53421 -38.68941 -37.87087 -35.00370 -34.75412 -34.57766 -29.65543 -28.04502 -27.27047 -23.94905 -23.18168 -22.70690 -21.48399 -21.28983 -19.58438 -18.63983 -17.92999 -17.46074 -16.90676 -16.58456 -16.25650 -16.07097 -15.49748 -15.18626 -14.90211 -14.17661 -14.12087 -13.87136 -13.41421 -13.18240 -13.06477 -12.94887 -12.72225 -12.60692 -12.39581 -12.38243 -12.34878 -11.98232 -11.81136 -11.70416 -11.50721 -11.40929 -11.15796 -11.04083 -10.71166 -10.37598 -8.69211 -8.39046 -6.15755 1.18266 1.27723 1.39219 1.44327 1.53717 1.88112 2.26266 2.94532 2.95493 3.27470 3.61250 3.69500 3.83118 3.98124 4.02486 4.06843 4.11964 4.16579 4.20810 4.31094 4.40179 4.52274 4.66180 4.69208 4.73474 4.82297 4.87789 4.90853 5.00430 5.09520 5.13473 5.23335 5.27959 5.33251 5.38913 5.47359 5.51908 6.16760 6.71359 7.03414 8.70291 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.078475 B = 0.002063 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.717538 B =13569.209614 C =13811.783323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.017 3.983 3 Si 0.994 3.006 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.074 0.926 9 S -0.184 6.184 10 C -0.093 4.093 11 C -0.085 4.085 12 C 0.079 3.921 13 O -0.360 6.360 14 C 0.455 3.545 15 O -0.546 6.546 16 C -0.107 4.107 17 C -0.102 4.102 18 C -0.082 4.082 19 C -0.165 4.165 20 C -0.187 4.187 21 C -0.179 4.179 22 H 0.272 0.728 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.264 -26.984 -0.257 27.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.189 4.189 3 Si 0.816 3.184 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.188 1.188 7 C -0.690 4.690 8 H 0.092 0.908 9 S 0.045 5.955 10 C -0.242 4.242 11 C -0.124 4.124 12 C 0.004 3.996 13 O -0.276 6.276 14 C 0.300 3.700 15 O -0.436 6.436 16 C -0.144 4.144 17 C -0.139 4.139 18 C -0.119 4.119 19 C -0.183 4.183 20 C -0.224 4.224 21 C -0.216 4.216 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.312 -26.946 -0.253 27.677 hybrid contribution 1.937 1.578 -0.017 2.499 sum 8.250 -25.368 -0.270 26.677 Atomic orbital electron populations 1.70144 1.07632 1.28639 1.47790 1.26059 0.96051 1.03077 0.93674 0.85011 0.78148 0.76369 0.78843 1.19268 1.19818 1.18834 1.23066 0.94853 0.91995 1.59125 0.90823 1.84610 1.13042 1.00782 1.97063 1.23080 1.00809 0.96671 1.03593 1.21101 0.97038 0.89779 1.04473 1.22985 0.96532 0.77379 1.02707 1.86485 1.40900 1.16641 1.83614 1.24700 0.84156 0.90104 0.70999 1.90658 1.20175 1.85687 1.47087 1.21593 1.01044 0.83695 1.08107 1.21358 0.95962 0.93882 1.02746 1.21133 0.95849 0.91558 1.03366 1.22381 1.00483 0.92262 1.03157 1.23133 1.02743 1.04568 0.91971 1.23052 1.02977 0.95216 1.00394 0.91869 0.91423 0.91411 0.90208 0.90199 0.91087 0.91102 0.85253 0.85351 0.92271 0.92144 0.90137 0.90506 0.88486 0.88257 0.88976 0.88621 0.88001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.39 13.22 21.65 0.29 -54.11 16 2 C 0.02 0.94 5.49 84.86 0.47 1.41 16 3 Si 0.99 43.86 29.55 68.60 2.03 45.89 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.54 -31.31 9.50 67.96 0.65 -30.66 16 8 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 9 S -0.18 -9.69 21.44 -56.49 -1.21 -10.90 16 10 C -0.09 -3.69 5.67 71.98 0.41 -3.28 16 11 C -0.09 -2.73 5.60 30.59 0.17 -2.56 16 12 C 0.08 2.24 5.47 71.98 0.39 2.63 16 13 O -0.36 -9.32 10.22 -51.41 -0.53 -9.84 16 14 C 0.46 10.70 7.96 71.24 0.57 11.27 16 15 O -0.55 -16.46 15.73 21.97 0.35 -16.11 16 16 C -0.11 -1.43 5.81 29.85 0.17 -1.26 16 17 C -0.10 -1.41 4.46 30.59 0.14 -1.28 16 18 C -0.08 -0.81 5.50 30.59 0.17 -0.64 16 19 C -0.16 -1.91 5.73 -10.79 -0.06 -1.97 16 20 C -0.19 -2.02 10.18 30.62 0.31 -1.71 16 21 C -0.18 -1.78 10.25 30.62 0.31 -1.46 16 22 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 23 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 24 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 25 H 0.08 2.53 8.14 -2.38 -0.02 2.52 16 26 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 28 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 29 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 32 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 33 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.63 7.87 -2.39 -0.02 0.61 16 35 H 0.10 1.26 8.08 -2.39 -0.02 1.24 16 36 H 0.10 0.96 8.03 -2.39 -0.02 0.94 16 37 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -69.24 347.09 5.61 -63.63 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.00 Total: 10.97 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 3.69 Total: -29.52 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.29 Total: -54.11 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.18 Total: -25.95 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -9.69 SS G_CDS: -1.21 Total: -10.90 kcal Total: -69.24 5.61 -63.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812602196.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.629 kcal (2) G-P(sol) polarization free energy of solvation -69.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds