Wall clock time and date at job start Mon Mar 30 2020 01:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 116.99954 * 2 1 4 4 O 1.20823 * 120.00048 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99817 * 179.97438 * 3 2 1 6 6 H 1.09005 * 115.54919 * 298.94266 * 5 3 2 7 7 C 1.53003 * 117.51885 * 153.23908 * 5 3 2 8 8 C 1.52999 * 117.50157 * 84.60959 * 5 3 2 9 9 H 1.08996 * 117.50359 * 215.02688 * 8 5 3 10 10 C 1.50708 * 117.49445 * 0.02653 * 8 5 3 11 11 O 1.20822 * 119.99870 * 86.52685 * 10 8 5 12 12 O 1.34227 * 119.99847 * 266.52600 * 10 8 5 13 13 C 1.45200 * 116.99955 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.47221 * 179.97438 * 13 12 10 15 15 O 1.42902 * 109.46776 * 64.99972 * 14 13 12 16 16 C 1.42894 * 113.99738 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46928 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00099 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99839 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00497 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99789 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47203 * 60.00199 * 21 19 17 23 23 H 1.48507 * 109.47025 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47365 * 299.99696 * 21 19 17 25 25 H 1.08997 * 109.46777 * 59.99798 * 1 2 3 26 26 H 1.09000 * 109.47358 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47218 * 299.99902 * 1 2 3 28 28 H 1.09000 * 117.49779 * 145.02927 * 7 5 3 29 29 H 1.08995 * 117.49934 * 0.02562 * 7 5 3 30 30 H 1.09009 * 109.47010 * 60.00122 * 13 12 10 31 31 H 1.08993 * 109.47479 * 299.99884 * 13 12 10 32 32 H 1.08999 * 109.46906 * 305.00706 * 14 13 12 33 33 H 1.08995 * 109.47080 * 185.00037 * 14 13 12 34 34 H 1.09004 * 109.47021 * 299.99738 * 16 15 14 35 35 H 1.09000 * 109.47300 * 60.00196 * 16 15 14 36 36 H 0.97001 * 120.00733 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0603 0.8243 0.8615 7 6 4.2091 2.5216 -0.6104 8 6 4.2790 1.1842 -1.3502 9 1 5.2417 0.6738 -1.3781 10 6 3.4222 1.0235 -2.5796 11 8 2.9728 1.9982 -3.1343 12 8 3.1585 -0.2025 -3.0582 13 6 2.3269 -0.2816 -4.2459 14 6 2.1381 -1.7480 -4.6395 15 8 1.4032 -2.4246 -3.6177 16 6 1.1713 -3.8085 -3.8881 17 6 0.3920 -4.4186 -2.7516 18 1 0.1032 -3.8105 -1.9071 19 6 0.0488 -5.7534 -2.7894 20 7 0.4009 -6.4941 -3.8175 21 14 -0.9165 -6.5099 -1.3803 22 1 -2.2179 -5.8087 -1.2391 23 1 -1.1577 -7.9481 -1.6614 24 1 -0.1419 -6.3743 -0.1206 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 5.1260 2.8913 -0.1514 29 1 3.5435 3.2853 -1.0125 30 1 2.8091 0.2545 -5.0634 31 1 1.3554 0.1676 -4.0398 32 1 3.1130 -2.2205 -4.7592 33 1 1.5892 -1.8041 -5.5795 34 1 0.6024 -3.9077 -4.8126 35 1 2.1263 -4.3234 -3.9920 36 1 0.1597 -7.4333 -3.8440 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815204822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:11 Heat of formation + Delta-G solvation = -190.227038 kcal Electronic energy + Delta-G solvation = -21234.034822 eV Core-core repulsion = 17685.074471 eV Total energy + Delta-G solvation = -3548.960351 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.05182 -40.04587 -37.65255 -36.80093 -36.17176 -35.79957 -32.78109 -30.22487 -28.12534 -27.03442 -25.63340 -24.40805 -22.45552 -22.02233 -20.92721 -20.21912 -18.43610 -17.28296 -17.00780 -16.87603 -16.41039 -16.22693 -15.61780 -15.28854 -14.93883 -14.65407 -14.30087 -13.80407 -13.31272 -13.11104 -12.93350 -12.62315 -12.25525 -11.99664 -11.99242 -11.45096 -11.19963 -11.10773 -10.94310 -10.84798 -10.76222 -10.70349 -10.57536 -10.45141 -10.38954 -10.06592 -9.15314 -8.88282 -8.22152 -6.12794 -4.14421 1.89817 2.11937 2.44203 2.67492 3.30425 3.33481 3.36704 3.38621 4.18719 4.25288 4.30666 4.53592 4.68919 4.78403 4.92309 5.18772 5.23816 5.24433 5.31063 5.32325 5.36140 5.42308 5.71249 5.77591 5.83741 5.90155 6.05624 6.38973 6.51241 7.04486 7.38969 7.67958 7.74832 7.77093 8.11612 8.51528 8.97435 9.50110 10.98784 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.019559 B = 0.004940 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.234844 B = 5666.093693 C = 6625.002103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.338 6.338 3 C 0.480 3.520 4 O -0.500 6.500 5 C -0.137 4.137 6 H 0.156 0.844 7 C -0.114 4.114 8 C -0.139 4.139 9 H 0.155 0.845 10 C 0.481 3.519 11 O -0.504 6.504 12 O -0.329 6.329 13 C 0.074 3.926 14 C 0.062 3.938 15 O -0.388 6.388 16 C 0.195 3.805 17 C -0.513 4.513 18 H 0.066 0.934 19 C 0.057 3.943 20 N -0.899 5.899 21 Si 0.907 3.093 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.063 0.937 26 H 0.111 0.889 27 H 0.060 0.940 28 H 0.127 0.873 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.005 0.995 35 H 0.007 0.993 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.044 14.420 5.538 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.253 6.253 3 C 0.322 3.678 4 O -0.388 6.388 5 C -0.156 4.156 6 H 0.174 0.826 7 C -0.150 4.150 8 C -0.158 4.158 9 H 0.172 0.828 10 C 0.323 3.677 11 O -0.393 6.393 12 O -0.244 6.244 13 C 0.000 4.000 14 C -0.015 4.015 15 O -0.308 6.308 16 C 0.120 3.880 17 C -0.551 4.551 18 H 0.084 0.916 19 C -0.144 4.144 20 N -0.538 5.538 21 Si 0.734 3.266 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.081 0.919 26 H 0.130 0.870 27 H 0.079 0.921 28 H 0.145 0.855 29 H 0.138 0.862 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.023 0.977 35 H 0.025 0.975 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.552 14.852 5.428 17.524 hybrid contribution -0.643 -0.716 0.235 0.991 sum 6.909 14.135 5.663 16.722 Atomic orbital electron populations 1.23363 0.75308 1.04783 1.01999 1.86587 1.24054 1.31775 1.82884 1.22526 0.90360 0.82046 0.72832 1.90673 1.66664 1.36576 1.44854 1.21872 0.89109 1.06128 0.98473 0.82631 1.23263 1.03012 0.90292 0.98475 1.21886 1.00852 1.04819 0.88208 0.82778 1.22464 0.78620 0.81823 0.84783 1.90674 1.49462 1.40381 1.58781 1.86608 1.63832 1.30187 1.43812 1.23267 0.94185 0.98050 0.84482 1.22309 0.96835 0.90031 0.92357 1.87928 1.74079 1.26117 1.42712 1.20230 0.95478 0.75330 0.96914 1.20984 1.34676 0.94389 1.05095 0.91570 1.24934 0.96249 0.96692 0.96540 1.69944 1.46592 1.07413 1.29866 0.86409 0.80254 0.77862 0.82031 1.20053 1.21156 1.19941 0.91860 0.87036 0.92134 0.85524 0.86202 0.90307 0.90675 0.93099 0.91910 0.97695 0.97510 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.56 101.05 1.07 1.62 16 2 O -0.34 -5.48 10.57 -39.25 -0.41 -5.89 16 3 C 0.48 7.22 6.65 36.00 0.24 7.46 16 4 O -0.50 -8.56 16.34 -18.75 -0.31 -8.86 16 5 C -0.14 -1.46 6.29 -91.77 -0.58 -2.04 16 6 H 0.16 1.11 8.14 -51.93 -0.42 0.69 16 7 C -0.11 -1.03 9.55 -26.73 -0.26 -1.28 16 8 C -0.14 -1.50 6.30 -91.77 -0.58 -2.08 16 9 H 0.15 1.15 8.14 -51.93 -0.42 0.73 16 10 C 0.48 7.39 6.70 36.01 0.24 7.63 16 11 O -0.50 -8.78 16.16 -18.75 -0.30 -9.08 16 12 O -0.33 -5.63 10.19 -42.01 -0.43 -6.06 16 13 C 0.07 1.20 5.84 37.16 0.22 1.42 16 14 C 0.06 1.14 6.33 37.16 0.24 1.37 16 15 O -0.39 -9.32 10.30 -38.80 -0.40 -9.72 16 16 C 0.19 5.26 5.69 36.01 0.20 5.47 16 17 C -0.51 -14.88 9.43 -34.44 -0.32 -15.20 16 18 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 21 Si 0.91 21.49 29.54 -169.99 -5.02 16.47 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 26 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 28 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.12 1.36 7.57 -51.93 -0.39 0.97 16 30 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 31 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 35 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 327.87 15.07 4.94 4.94 Total: -1.00 -35.42 327.87 -5.83 -41.25 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -5.01 Total: -3.12 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 0.37 Total: 5.90 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.74 Total: -25.82 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -1.85 Total: -39.62 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.42 -5.83 -41.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815204822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.977 kcal (2) G-P(sol) polarization free energy of solvation -35.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds