Wall clock time and date at job start Mon Mar 30 2020 01:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 C 1.50704 * 115.55143 * 34.32401 * 5 3 2 7 7 O 1.20824 * 119.99707 * 145.58581 * 6 5 3 8 8 O 1.34221 * 119.99880 * 325.58990 * 6 5 3 9 9 C 1.45201 * 117.00041 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47142 * 179.97438 * 9 8 6 11 11 O 1.42905 * 109.47246 * 65.00136 * 10 9 8 12 12 C 1.42898 * 114.00021 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47021 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99714 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99766 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99849 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00073 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47108 * 90.00675 * 17 15 13 19 19 H 1.48509 * 109.47049 * 210.00119 * 17 15 13 20 20 H 1.48497 * 109.47381 * 330.00317 * 17 15 13 21 21 C 1.53003 * 117.49920 * 248.62293 * 5 3 2 22 22 C 1.53006 * 60.00072 * 252.50611 * 21 5 3 23 23 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 24 24 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 26 26 H 1.08996 * 109.47005 * 299.99600 * 9 8 6 27 27 H 1.08999 * 109.47168 * 60.00030 * 9 8 6 28 28 H 1.09002 * 109.47467 * 184.99620 * 10 9 8 29 29 H 1.08994 * 109.47360 * 304.99941 * 10 9 8 30 30 H 1.09000 * 109.47527 * 299.99597 * 12 11 10 31 31 H 1.09003 * 109.46934 * 59.99972 * 12 11 10 32 32 H 0.96993 * 120.00308 * 179.97438 * 16 15 13 33 33 H 1.09005 * 117.49862 * 359.97438 * 21 5 3 34 34 H 1.08998 * 117.50254 * 145.01812 * 21 5 3 35 35 H 1.08993 * 117.49745 * 252.51069 * 22 21 5 36 36 H 1.08996 * 117.51467 * 107.47411 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.2740 0.1877 -0.7678 7 8 5.3017 0.4329 -1.3539 8 8 3.7625 -1.0528 -0.7999 9 6 4.4970 -2.0492 -1.5588 10 6 3.7666 -3.3913 -1.4795 11 8 2.4977 -3.2821 -2.1278 12 6 1.7307 -4.4876 -2.1108 13 6 0.4194 -4.2587 -2.8175 14 1 0.1942 -3.2894 -3.2371 15 6 -0.4931 -5.2864 -2.9272 16 7 -1.6372 -5.0868 -3.5443 17 14 -0.1038 -6.9627 -2.2008 18 1 -0.5850 -7.0176 -0.7969 19 1 -0.7811 -8.0170 -2.9977 20 1 1.3639 -7.1862 -2.2301 21 6 4.2464 1.8056 1.2630 22 6 4.2008 2.6672 -0.0006 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 4.5669 -1.7342 -2.5999 27 1 5.4991 -2.1563 -1.1434 28 1 4.3621 -4.1589 -1.9737 29 1 3.6184 -3.6631 -0.4344 30 1 2.2842 -5.2777 -2.6184 31 1 1.5403 -4.7826 -1.0789 32 1 -2.2791 -5.8098 -3.6219 33 1 3.6053 2.0981 2.0947 34 1 5.2058 1.3685 1.5398 35 1 5.1301 2.7967 -0.5551 36 1 3.5297 3.5260 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815233941.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:08 Heat of formation + Delta-G solvation = -181.913060 kcal Electronic energy + Delta-G solvation = -21278.708110 eV Core-core repulsion = 17730.108280 eV Total energy + Delta-G solvation = -3548.599830 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.16350 -40.00419 -37.78409 -36.94523 -36.19013 -35.71507 -32.71642 -30.45017 -28.25172 -27.59469 -25.75211 -23.06974 -22.94275 -21.98487 -21.78782 -19.98826 -18.69483 -17.36569 -16.95655 -16.68915 -16.55657 -16.17155 -15.75148 -15.33079 -14.82447 -14.66449 -14.34060 -13.80074 -13.24997 -13.13046 -13.02862 -12.57287 -12.47079 -12.00776 -11.90891 -11.73318 -11.54971 -11.20526 -11.07561 -10.90942 -10.75698 -10.63575 -10.62240 -10.50977 -10.33304 -9.89468 -9.22347 -8.91533 -8.52110 -6.14448 -4.13620 1.68316 2.15519 2.52191 2.63516 3.21984 3.29439 3.30091 3.30221 4.10926 4.26045 4.32435 4.44635 4.52997 4.63260 5.11052 5.12525 5.16808 5.19680 5.33306 5.36025 5.44705 5.46570 5.65226 5.67523 5.76608 5.90574 5.94402 6.39742 6.45053 6.54587 6.95430 7.55586 7.63842 7.73367 7.94845 8.61886 8.97124 9.44604 10.98497 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.023089 B = 0.004762 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.422311 B = 5878.786599 C = 6733.305680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.322 6.322 3 C 0.502 3.498 4 O -0.505 6.505 5 C -0.158 4.158 6 C 0.504 3.496 7 O -0.506 6.506 8 O -0.317 6.317 9 C 0.072 3.928 10 C 0.059 3.941 11 O -0.373 6.373 12 C 0.168 3.832 13 C -0.518 4.518 14 H 0.082 0.918 15 C 0.073 3.927 16 N -0.895 5.895 17 Si 0.875 3.125 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.267 1.267 21 C -0.118 4.118 22 C -0.108 4.108 23 H 0.065 0.935 24 H 0.113 0.887 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.003 0.997 31 H 0.000 1.000 32 H 0.267 0.733 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.092 10.767 10.889 19.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.236 6.236 3 C 0.344 3.656 4 O -0.395 6.395 5 C -0.161 4.161 6 C 0.346 3.654 7 O -0.396 6.396 8 O -0.231 6.231 9 C -0.001 4.001 10 C -0.019 4.019 11 O -0.292 6.292 12 C 0.093 3.907 13 C -0.556 4.556 14 H 0.100 0.900 15 C -0.129 4.129 16 N -0.533 5.533 17 Si 0.702 3.298 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.155 4.155 22 C -0.145 4.145 23 H 0.083 0.917 24 H 0.132 0.868 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.021 0.979 31 H 0.018 0.982 32 H 0.077 0.923 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.899 11.121 10.546 19.403 hybrid contribution -0.015 -1.355 0.271 1.382 sum 11.884 9.766 10.817 18.805 Atomic orbital electron populations 1.23417 0.75096 1.05052 1.01947 1.86676 1.23932 1.30701 1.82297 1.21747 0.88779 0.82379 0.72652 1.90664 1.66069 1.36617 1.46102 1.20566 0.89884 0.97649 1.07973 1.21709 0.82533 0.83020 0.78109 1.90660 1.23904 1.82691 1.42300 1.86689 1.52151 1.18124 1.66150 1.23260 0.94047 0.86370 0.96439 1.22374 0.88193 0.93363 0.97921 1.87992 1.27247 1.36980 1.76976 1.20625 0.91658 0.82934 0.95453 1.20866 0.98269 1.00319 1.36114 0.89951 1.24758 0.94688 0.98496 0.94960 1.69871 1.07876 1.33062 1.42539 0.86861 0.79052 0.84237 0.79642 1.19902 1.20798 1.19128 1.23247 1.01797 0.99980 0.90457 1.23327 1.02556 0.89743 0.98870 0.91665 0.86820 0.92254 0.90244 0.90181 0.91821 0.92949 0.97940 0.98190 0.92349 0.86369 0.86362 0.85705 0.85715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.56 101.05 1.07 1.62 16 2 O -0.32 -5.31 9.11 -45.54 -0.41 -5.73 16 3 C 0.50 7.59 7.49 36.00 0.27 7.86 16 4 O -0.51 -8.16 16.01 -18.76 -0.30 -8.46 16 5 C -0.16 -2.01 2.58 -156.81 -0.41 -2.41 16 6 C 0.50 7.58 7.49 36.01 0.27 7.85 16 7 O -0.51 -8.05 16.01 -18.75 -0.30 -8.35 16 8 O -0.32 -5.27 8.73 -46.85 -0.41 -5.67 16 9 C 0.07 1.09 5.84 37.16 0.22 1.31 16 10 C 0.06 1.00 6.33 37.16 0.24 1.23 16 11 O -0.37 -8.58 10.30 -38.79 -0.40 -8.98 16 12 C 0.17 4.19 4.76 36.01 0.17 4.36 16 13 C -0.52 -15.13 9.99 -34.44 -0.34 -15.48 16 14 H 0.08 2.65 8.06 -52.49 -0.42 2.22 16 15 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 16 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 17 Si 0.88 20.97 27.47 -169.99 -4.67 16.30 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 21 C -0.12 -0.99 9.94 -26.73 -0.27 -1.25 16 22 C -0.11 -1.02 9.56 -26.72 -0.26 -1.27 16 23 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 24 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 25 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 26 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 27 H 0.08 0.96 8.13 -51.93 -0.42 0.54 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.00 0.07 7.20 -51.93 -0.37 -0.30 16 31 H 0.00 0.01 7.57 -51.93 -0.39 -0.38 16 32 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 33 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.12 1.09 7.67 -51.93 -0.40 0.69 16 36 H 0.12 1.10 7.67 -51.93 -0.40 0.70 16 LS Contribution 322.05 15.07 4.85 4.85 Total: -1.00 -34.44 322.05 -4.96 -39.40 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -4.96 Total: -2.76 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 0.86 Total: 5.82 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.77 Total: -26.42 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -1.82 Total: -37.19 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.44 -4.96 -39.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815233941.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.513 kcal (2) G-P(sol) polarization free energy of solvation -34.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds